RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 SIK1P57059 783 aa20.22■□□□□ 0.83
LIG1-219ENST00000600055 CCDC184Q52MB2 194 aa20.22■□□□□ 0.83
LIG1-219ENST00000600055 ANP32CO43423 234 aa20.21■□□□□ 0.83
LIG1-219ENST00000600055 RBM42Q9BTD8 480 aaKnown RBP20.21■□□□□ 0.83
LIG1-219ENST00000600055 ADAMTS7Q9UKP4 1686 aa20.2■□□□□ 0.82
LIG1-219ENST00000600055 MRC1P22897 1456 aa20.2■□□□□ 0.82
LIG1-219ENST00000600055 ITPK1Q13572 414 aa20.2■□□□□ 0.82
LIG1-219ENST00000600055 SLC4A9Q96Q91 983 aa20.2■□□□□ 0.82
LIG1-219ENST00000600055 NEFMP07197 916 aa20.19■□□□□ 0.82
LIG1-219ENST00000600055 ATP6V1AP38606 617 aa20.19■□□□□ 0.82
LIG1-219ENST00000600055 SLC39A6Q13433 755 aa20.19■□□□□ 0.82
LIG1-219ENST00000600055 DCTN1Q14203 1278 aa20.19■□□□□ 0.82
LIG1-219ENST00000600055 WDR43Q15061 677 aaKnown RBP eCLIP20.19■□□□□ 0.82
LIG1-219ENST00000600055 PTCD1O75127 700 aaKnown RBP20.18■□□□□ 0.82
LIG1-219ENST00000600055 MCM10Q7L590 875 aa20.18■□□□□ 0.82
LIG1-219ENST00000600055 CCDC146Q8IYE0 955 aa20.18■□□□□ 0.82
LIG1-219ENST00000600055 LINC00116Q8NCU8 138 aa20.18■□□□□ 0.82
LIG1-219ENST00000600055 PNNQ9H307 717 aaKnown RBP20.18■□□□□ 0.82
LIG1-219ENST00000600055 ADAMTS8Q9UP79 889 aa20.18■□□□□ 0.82
LIG1-219ENST00000600055 TFCP2L1Q9NZI6 479 aa20.17■□□□□ 0.82
LIG1-219ENST00000600055 MAPK8IP3Q9UPT6 1336 aa20.17■□□□□ 0.82
LIG1-219ENST00000600055 CEMIPQ8WUJ3 1361 aa20.17■□□□□ 0.82
LIG1-219ENST00000600055 TEFQ10587 303 aa20.16■□□□□ 0.82
LIG1-219ENST00000600055 NFE2L2Q16236 605 aa20.16■□□□□ 0.82
LIG1-219ENST00000600055 RTF1Q92541 710 aaKnown RBP20.16■□□□□ 0.82
LIG1-219ENST00000600055 PNPLA7Q6ZV29 1317 aa20.15■□□□□ 0.82
LIG1-219ENST00000600055 VIRMAQ69YN4 1812 aaKnown RBP20.14■□□□□ 0.81
LIG1-219ENST00000600055 C5P01031 1676 aa20.14■□□□□ 0.81
LIG1-219ENST00000600055 ZBTB7AO95365 584 aa20.14■□□□□ 0.81
LIG1-219ENST00000600055 SMIM5Q71RC9 77 aa20.14■□□□□ 0.81
LIG1-219ENST00000600055 CASZ1Q86V15 1759 aa20.13■□□□□ 0.81
LIG1-219ENST00000600055 HTATSF1O43719 755 aaKnown RBP20.13■□□□□ 0.81
LIG1-219ENST00000600055 AMIGO3Q86WK7 504 aa20.13■□□□□ 0.81
LIG1-219ENST00000600055 TAF1LQ8IZX4 1826 aa20.12■□□□□ 0.81
LIG1-219ENST00000600055 RUNDC1Q96C34 613 aa20.12■□□□□ 0.81
LIG1-219ENST00000600055 AK7Q96M32 723 aa20.12■□□□□ 0.81
LIG1-219ENST00000600055 C4BP0C0L5 1744 aa20.12■□□□□ 0.81
LIG1-219ENST00000600055 KCNQ3O43525 872 aa20.11■□□□□ 0.81
LIG1-219ENST00000600055 TMPOP42166 694 aaKnown RBP20.11■□□□□ 0.81
LIG1-219ENST00000600055 THUMPD2Q9BTF0 503 aaKnown RBP20.11■□□□□ 0.81
LIG1-219ENST00000600055 ATF5Q9Y2D1 282 aaPredicted RBP20.11■□□□□ 0.81
LIG1-219ENST00000600055 RRP7AQ9Y3A4 280 aaKnown RBP20.11■□□□□ 0.81
LIG1-219ENST00000600055 RIPK4P57078 832 aa20.1■□□□□ 0.81
LIG1-219ENST00000600055 COL23A1Q86Y22 540 aaPredicted RBP20.1■□□□□ 0.81
LIG1-219ENST00000600055 MRS2Q9HD23 443 aa20.1■□□□□ 0.81
LIG1-219ENST00000600055 KCPQ6ZWJ8 1503 aa20.1■□□□□ 0.81
LIG1-219ENST00000600055 TUBGCP6Q96RT7 1819 aa20.09■□□□□ 0.81
LIG1-219ENST00000600055 BTBD11A6QL63 1104 aa20.09■□□□□ 0.81
LIG1-219ENST00000600055 HMGB2P26583 209 aaKnown RBP20.09■□□□□ 0.81
LIG1-219ENST00000600055 ZNF790Q6PG37 636 aa20.09■□□□□ 0.81
LIG1-219ENST00000600055 DNAJC10Q8IXB1 793 aa20.09■□□□□ 0.81
LIG1-219ENST00000600055 TTC5Q8N0Z6 440 aa20.09■□□□□ 0.81
LIG1-219ENST00000600055 SPON1Q9HCB6 807 aa20.09■□□□□ 0.81
LIG1-219ENST00000600055 GNPATO15228 680 aa20.08■□□□□ 0.81
LIG1-219ENST00000600055 MSH5O43196 834 aa20.08■□□□□ 0.81
LIG1-219ENST00000600055 PHF14O94880 888 aa20.08■□□□□ 0.81
LIG1-219ENST00000600055 NEUROD2Q15784 382 aa20.08■□□□□ 0.81
LIG1-219ENST00000600055 SIPA1L3O60292 1781 aaPredicted RBP20.08■□□□□ 0.8
LIG1-219ENST00000600055 SRCAPQ6ZRS2 3230 aa20.07■□□□□ 0.8
LIG1-219ENST00000600055 LRP5O75197 1615 aa20.07■□□□□ 0.8
LIG1-219ENST00000600055 ZNF496Q96IT1 587 aaPredicted RBP20.07■□□□□ 0.8
LIG1-219ENST00000600055 MIS18AQ9NYP9 233 aa20.07■□□□□ 0.8
LIG1-219ENST00000600055 DLG5Q8TDM6 1919 aa20.07■□□□□ 0.8
LIG1-219ENST00000600055 ZNF831Q5JPB2 1677 aa20.07■□□□□ 0.8
LIG1-219ENST00000600055 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.06■□□□□ 0.8
LIG1-219ENST00000600055 TAF7Q15545 349 aaPredicted RBP20.06■□□□□ 0.8
LIG1-219ENST00000600055 PNISRQ8TF01 805 aaKnown RBP20.06■□□□□ 0.8
LIG1-219ENST00000600055 MTFR1LQ9H019 292 aa20.06■□□□□ 0.8
LIG1-219ENST00000600055 CNTNAP4Q9C0A0 1308 aa20.05■□□□□ 0.8
LIG1-219ENST00000600055 TJP1Q07157 1748 aa20.05■□□□□ 0.8
LIG1-219ENST00000600055 QSER1Q2KHR3 1735 aa20.05■□□□□ 0.8
LIG1-219ENST00000600055 CRKLP46109 303 aaKnown RBP20.05■□□□□ 0.8
LIG1-219ENST00000600055 RC3H1Q5TC82 1133 aaKnown RBP20.05■□□□□ 0.8
LIG1-219ENST00000600055 PTGER2P43116 358 aa20.04■□□□□ 0.8
LIG1-219ENST00000600055 COL5A3P25940 1745 aaPredicted RBP20.03■□□□□ 0.8
LIG1-219ENST00000600055 APAF1O14727 1248 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 CYP19A1P11511 503 aaPredicted RBP20.03■□□□□ 0.8
LIG1-219ENST00000600055 SSFA2P28290 1259 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 INTS5Q6P9B9 1019 aaKnown RBP20.03■□□□□ 0.8
LIG1-219ENST00000600055 VSIG10Q8N0Z9 540 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 FLAD1Q8NFF5 587 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 SLC16A10Q8TF71 515 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 TRIM35Q9UPQ4 493 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 RTCBQ9Y3I0 505 aaKnown RBP20.03■□□□□ 0.8
LIG1-219ENST00000600055 HEG1Q9ULI3 1381 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 UBR2Q8IWV8 1755 aa20.03■□□□□ 0.8
LIG1-219ENST00000600055 RPS6KA4O75676 772 aa20.02■□□□□ 0.8
LIG1-219ENST00000600055 MSL1Q68DK7 614 aa20.02■□□□□ 0.8
LIG1-219ENST00000600055 FMNL2Q96PY5 1086 aa20.02■□□□□ 0.8
LIG1-219ENST00000600055 SGIP1Q9BQI5 828 aa20.02■□□□□ 0.8
LIG1-219ENST00000600055 UBR3Q6ZT12 1888 aa20.02■□□□□ 0.8
LIG1-219ENST00000600055 SENP3-EIF4A1A0A087X0R7 540 aa20.01■□□□□ 0.79
LIG1-219ENST00000600055 LMOD3Q0VAK6 560 aa20.01■□□□□ 0.79
LIG1-219ENST00000600055 CICQ96RK0 1608 aaPredicted RBP20.01■□□□□ 0.79
LIG1-219ENST00000600055 PRAMEF22A3QJZ6 481 aa20■□□□□ 0.79
LIG1-219ENST00000600055 CCDC87Q9NVE4 849 aa20■□□□□ 0.79
LIG1-219ENST00000600055 TRAPPC3LQ5T215 181 aa19.99■□□□□ 0.79
LIG1-219ENST00000600055 ARHGEF1Q92888 912 aaKnown RBP19.99■□□□□ 0.79
LIG1-219ENST00000600055 PPP1R1BQ9UD71 204 aaPredicted RBP19.99■□□□□ 0.79
LIG1-219ENST00000600055 MYH14Q7Z406 1995 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms