RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 NUP188Q5SRE5 1749 aa18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 ADAMTS7Q9UKP4 1686 aa18.85■□□□□ 0.61
SHKBP1-217ENST00000598558 RGPD3A6NKT7 1758 aaPredicted RBP18.84■□□□□ 0.61
SHKBP1-217ENST00000598558 RGPD4Q7Z3J3 1758 aa18.84■□□□□ 0.61
SHKBP1-217ENST00000598558 ITPK1Q13572 414 aa18.84■□□□□ 0.61
SHKBP1-217ENST00000598558 RUNDC1Q96C34 613 aa18.84■□□□□ 0.61
SHKBP1-217ENST00000598558 RRP7AQ9Y3A4 280 aaKnown RBP18.84■□□□□ 0.61
SHKBP1-217ENST00000598558 KAT6BQ8WYB5 2073 aa18.84■□□□□ 0.61
SHKBP1-217ENST00000598558 LOC102724428A0A0B4J2F2 783 aa18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 TMPOP42166 694 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 SIK1P57059 783 aa18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 AKT1S1Q96B36 256 aa18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 THUMPD2Q9BTF0 503 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 PDGFDQ9GZP0 370 aaPredicted RBP18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 PNNQ9H307 717 aaKnown RBP18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 MRC1P22897 1456 aa18.83■□□□□ 0.6
SHKBP1-217ENST00000598558 MAPK8IP3Q9UPT6 1336 aa18.82■□□□□ 0.6
SHKBP1-217ENST00000598558 KCNQ3O43525 872 aa18.82■□□□□ 0.6
SHKBP1-217ENST00000598558 HTATSF1O43719 755 aaKnown RBP18.82■□□□□ 0.6
SHKBP1-217ENST00000598558 NBPF14Q5TI25 921 aa18.82■□□□□ 0.6
SHKBP1-217ENST00000598558 SCN11AQ9UI33 1791 aa18.81■□□□□ 0.6
SHKBP1-217ENST00000598558 PTCD1O75127 700 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-217ENST00000598558 RIPK4P57078 832 aa18.81■□□□□ 0.6
SHKBP1-217ENST00000598558 SLC15A2Q16348 729 aa18.81■□□□□ 0.6
SHKBP1-217ENST00000598558 RBM42Q9BTD8 480 aaKnown RBP18.81■□□□□ 0.6
SHKBP1-217ENST00000598558 LY75O60449 1722 aa18.8■□□□□ 0.6
SHKBP1-217ENST00000598558 SENP3-EIF4A1A0A087X0R7 540 aa18.8■□□□□ 0.6
SHKBP1-217ENST00000598558 NEFMP07197 916 aa18.8■□□□□ 0.6
SHKBP1-217ENST00000598558 TEFQ10587 303 aa18.8■□□□□ 0.6
SHKBP1-217ENST00000598558 LINC00116Q8NCU8 138 aa18.8■□□□□ 0.6
SHKBP1-217ENST00000598558 PAPPAQ13219 1627 aa18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 NEUROD2Q15784 382 aa18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 DIEXFQ68CQ4 756 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 SMIM5Q71RC9 77 aa18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 AMIGO3Q86WK7 504 aa18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 RTF1Q92541 710 aaKnown RBP18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 TRIM35Q9UPQ4 493 aa18.79■□□□□ 0.6
SHKBP1-217ENST00000598558 APAF1O14727 1248 aa18.78■□□□□ 0.6
SHKBP1-217ENST00000598558 ATP6V1AP38606 617 aa18.78■□□□□ 0.6
SHKBP1-217ENST00000598558 STK32BQ9NY57 414 aa18.78■□□□□ 0.6
SHKBP1-217ENST00000598558 MIS18AQ9NYP9 233 aa18.78■□□□□ 0.6
SHKBP1-217ENST00000598558 ZNF790Q6PG37 636 aa18.76■□□□□ 0.59
SHKBP1-217ENST00000598558 BTBD11A6QL63 1104 aa18.75■□□□□ 0.59
SHKBP1-217ENST00000598558 MIER1Q8N108 512 aa18.75■□□□□ 0.59
SHKBP1-217ENST00000598558 ZNF496Q96IT1 587 aaPredicted RBP18.75■□□□□ 0.59
SHKBP1-217ENST00000598558 KCPQ6ZWJ8 1503 aa18.74■□□□□ 0.59
SHKBP1-217ENST00000598558 TAF7Q15545 349 aaPredicted RBP18.74■□□□□ 0.59
SHKBP1-217ENST00000598558 DNAJC10Q8IXB1 793 aa18.74■□□□□ 0.59
SHKBP1-217ENST00000598558 FAM9BQ8IZU0 186 aa18.74■□□□□ 0.59
SHKBP1-217ENST00000598558 PNPLA7Q6ZV29 1317 aa18.73■□□□□ 0.59
SHKBP1-217ENST00000598558 TFCP2L1Q9NZI6 479 aa18.72■□□□□ 0.59
SHKBP1-217ENST00000598558 PRAMEF22A3QJZ6 481 aa18.71■□□□□ 0.59
SHKBP1-217ENST00000598558 COL23A1Q86Y22 540 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-217ENST00000598558 SIPA1L3O60292 1781 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-217ENST00000598558 TTC5Q8N0Z6 440 aa18.7■□□□□ 0.58
SHKBP1-217ENST00000598558 DLG5Q8TDM6 1919 aa18.7■□□□□ 0.58
SHKBP1-217ENST00000598558 CYP19A1P11511 503 aaPredicted RBP18.69■□□□□ 0.58
SHKBP1-217ENST00000598558 INTS5Q6P9B9 1019 aaKnown RBP18.69■□□□□ 0.58
SHKBP1-217ENST00000598558 HEG1Q9ULI3 1381 aa18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 VIRMAQ69YN4 1812 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 CCER2I3L3R5 266 aa18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 ZBTB7AO95365 584 aa18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 CRKLP46109 303 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 RC3H1Q5TC82 1133 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 VSIG10Q8N0Z9 540 aa18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 AK7Q96M32 723 aa18.68■□□□□ 0.58
SHKBP1-217ENST00000598558 C5P01031 1676 aa18.67■□□□□ 0.58
SHKBP1-217ENST00000598558 C4BP0C0L5 1744 aa18.67■□□□□ 0.58
SHKBP1-217ENST00000598558 GNPATO15228 680 aa18.67■□□□□ 0.58
SHKBP1-217ENST00000598558 LMOD3Q0VAK6 560 aa18.67■□□□□ 0.58
SHKBP1-217ENST00000598558 FMNL2Q96PY5 1086 aa18.67■□□□□ 0.58
SHKBP1-217ENST00000598558 USP16Q9Y5T5 823 aa18.67■□□□□ 0.58
SHKBP1-217ENST00000598558 TAF1LQ8IZX4 1826 aa18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 PHF14O94880 888 aa18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 EIF4A1P60842 406 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 ATF5Q9Y2D1 282 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 CNTNAP4Q9C0A0 1308 aa18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 TJP1Q07157 1748 aa18.66■□□□□ 0.58
SHKBP1-217ENST00000598558 CHL1O00533 1208 aa18.65■□□□□ 0.58
SHKBP1-217ENST00000598558 SALL2Q9Y467 1007 aaPredicted RBP18.65■□□□□ 0.58
SHKBP1-217ENST00000598558 ZNF831Q5JPB2 1677 aa18.65■□□□□ 0.58
SHKBP1-217ENST00000598558 CASZ1Q86V15 1759 aa18.64■□□□□ 0.57
SHKBP1-217ENST00000598558 UBR2Q8IWV8 1755 aa18.64■□□□□ 0.57
SHKBP1-217ENST00000598558 RPS6KA4O75676 772 aa18.64■□□□□ 0.57
SHKBP1-217ENST00000598558 A1BGP04217 495 aa18.63■□□□□ 0.57
SHKBP1-217ENST00000598558 ZNF853P0CG23 659 aa18.63■□□□□ 0.57
SHKBP1-217ENST00000598558 CCDC87Q9NVE4 849 aa18.63■□□□□ 0.57
SHKBP1-217ENST00000598558 TSPYL4Q9UJ04 414 aa18.63■□□□□ 0.57
SHKBP1-217ENST00000598558 ZBTB1Q9Y2K1 713 aa18.63■□□□□ 0.57
SHKBP1-217ENST00000598558 LAS1LQ9Y4W2 734 aaKnown RBP18.63■□□□□ 0.57
SHKBP1-217ENST00000598558 MSH5O43196 834 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 SSFA2P28290 1259 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 PTGER2P43116 358 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 KRT24Q2M2I5 525 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 WWC1Q8IX03 1113 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 ARHGEF1Q92888 912 aaKnown RBP18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 SGIP1Q9BQI5 828 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 TUBGCP6Q96RT7 1819 aa18.62■□□□□ 0.57
SHKBP1-217ENST00000598558 COL5A3P25940 1745 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms