RNA–Protein interactions for RNA: ENST00000597965.2

PNKP-210, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 351 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-210ENST00000597965 PLEKHO1Q53GL0 409 aaPredicted RBP23.32■■□□□ 1.32
PNKP-210ENST00000597965 ATG3Q9NT62 314 aa23.32■■□□□ 1.32
PNKP-210ENST00000597965 IGSF1Q8N6C5 1336 aa23.32■■□□□ 1.32
PNKP-210ENST00000597965 AMIGO3Q86WK7 504 aa23.3■■□□□ 1.32
PNKP-210ENST00000597965 RTCBQ9Y3I0 505 aaKnown RBP23.3■■□□□ 1.32
PNKP-210ENST00000597965 ZNF831Q5JPB2 1677 aa23.29■■□□□ 1.32
PNKP-210ENST00000597965 ADRA2BP18089 450 aa23.29■■□□□ 1.32
PNKP-210ENST00000597965 ITPK1Q13572 414 aa23.29■■□□□ 1.32
PNKP-210ENST00000597965 TRAPPC3LQ5T215 181 aa23.29■■□□□ 1.32
PNKP-210ENST00000597965 PANK3Q9H999 370 aa23.29■■□□□ 1.32
PNKP-210ENST00000597965 GPBP1L1Q9HC44 474 aaPredicted RBP23.29■■□□□ 1.32
PNKP-210ENST00000597965 ATP10DQ9P241 1426 aa23.28■■□□□ 1.32
PNKP-210ENST00000597965 NLGN1Q8N2Q7 840 aa23.28■■□□□ 1.32
PNKP-210ENST00000597965 RC3H1Q5TC82 1133 aaKnown RBP23.27■■□□□ 1.32
PNKP-210ENST00000597965 CABP4P57796 275 aa23.26■■□□□ 1.31
PNKP-210ENST00000597965 C1orf141Q5JVX7 400 aa23.26■■□□□ 1.31
PNKP-210ENST00000597965 MORC1Q86VD1 984 aa23.26■■□□□ 1.31
PNKP-210ENST00000597965 RBM42Q9BTD8 480 aaKnown RBP23.26■■□□□ 1.31
PNKP-210ENST00000597965 HSPA5P11021 654 aaKnown RBP23.25■■□□□ 1.31
PNKP-210ENST00000597965 KDRP35968 1356 aa23.25■■□□□ 1.31
PNKP-210ENST00000597965 MMP10P09238 476 aa23.24■■□□□ 1.31
PNKP-210ENST00000597965 TGFB2P61812 414 aa23.24■■□□□ 1.31
PNKP-210ENST00000597965 ZNF530Q6P9A1 599 aaPredicted RBP23.24■■□□□ 1.31
PNKP-210ENST00000597965 SMIM5Q71RC9 77 aa23.24■■□□□ 1.31
PNKP-210ENST00000597965 KNSTRNQ9Y448 316 aa23.24■■□□□ 1.31
PNKP-210ENST00000597965 RFC4P35249 363 aa23.23■■□□□ 1.31
PNKP-210ENST00000597965 MTHFSP49914 203 aa23.23■■□□□ 1.31
PNKP-210ENST00000597965 CNTNAP4Q9C0A0 1308 aa23.23■■□□□ 1.31
PNKP-210ENST00000597965 ADCY9O60503 1353 aa23.22■■□□□ 1.31
PNKP-210ENST00000597965 RPS6KA4O75676 772 aa23.2■■□□□ 1.3
PNKP-210ENST00000597965 CCDC87Q9NVE4 849 aa23.2■■□□□ 1.3
PNKP-210ENST00000597965 KIF13BQ9NQT8 1826 aa23.19■■□□□ 1.3
PNKP-210ENST00000597965 ARHGEF1Q92888 912 aaKnown RBP23.19■■□□□ 1.3
PNKP-210ENST00000597965 COL5A3P25940 1745 aaPredicted RBP23.19■■□□□ 1.3
PNKP-210ENST00000597965 PARP3Q9Y6F1 533 aa23.18■■□□□ 1.3
PNKP-210ENST00000597965 KDM6AO15550 1401 aaPredicted RBP23.17■■□□□ 1.3
PNKP-210ENST00000597965 SLC4A9Q96Q91 983 aa23.17■■□□□ 1.3
PNKP-210ENST00000597965 CICQ96RK0 1608 aaPredicted RBP23.16■■□□□ 1.3
PNKP-210ENST00000597965 SULT6B1Q6IMI4 303 aa23.16■■□□□ 1.3
PNKP-210ENST00000597965 CCER1Q8TC90 406 aaPredicted RBP23.16■■□□□ 1.3
PNKP-210ENST00000597965 WWC3Q9ULE0 1092 aa23.16■■□□□ 1.3
PNKP-210ENST00000597965 GYS1P13807 737 aa23.15■■□□□ 1.3
PNKP-210ENST00000597965 NFATC2IPQ8NCF5 419 aa23.15■■□□□ 1.3
PNKP-210ENST00000597965 ZNF526Q8TF50 670 aaPredicted RBP23.15■■□□□ 1.3
PNKP-210ENST00000597965 PXDNLA1KZ92 1463 aa23.15■■□□□ 1.3
PNKP-210ENST00000597965 PTCD1O75127 700 aaKnown RBP23.14■■□□□ 1.29
PNKP-210ENST00000597965 C10orf71Q711Q0 1435 aa23.14■■□□□ 1.29
PNKP-210ENST00000597965 AEBP1Q8IUX7 1158 aa23.13■■□□□ 1.29
PNKP-210ENST00000597965 BCS1LQ9Y276 419 aa23.13■■□□□ 1.29
PNKP-210ENST00000597965 C4AP0C0L4 1744 aa23.13■■□□□ 1.29
PNKP-210ENST00000597965 AKAP4Q5JQC9 854 aa23.12■■□□□ 1.29
PNKP-210ENST00000597965 HSPA6P17066 643 aa23.11■■□□□ 1.29
PNKP-210ENST00000597965 IL13P35225 146 aa23.11■■□□□ 1.29
PNKP-210ENST00000597965 CRKLP46109 303 aaKnown RBP23.11■■□□□ 1.29
PNKP-210ENST00000597965 N4BP2Q86UW6 1770 aaPredicted RBP23.1■■□□□ 1.29
PNKP-210ENST00000597965 A0A0G2JLW4 131 aa23.1■■□□□ 1.29
PNKP-210ENST00000597965 MYH14Q7Z406 1995 aaKnown RBP23.09■■□□□ 1.29
PNKP-210ENST00000597965 CEP350Q5VT06 3117 aa23.09■■□□□ 1.29
PNKP-210ENST00000597965 SCN11AQ9UI33 1791 aa23.09■■□□□ 1.29
PNKP-210ENST00000597965 FCHSD2O94868 740 aa23.08■■□□□ 1.29
PNKP-210ENST00000597965 KIAA1551Q9HCM1 1747 aa23.08■■□□□ 1.28
PNKP-210ENST00000597965 USP42Q9H9J4 1324 aaKnown RBP23.08■■□□□ 1.28
PNKP-210ENST00000597965 DPEP1P16444 411 aa23.07■■□□□ 1.28
PNKP-210ENST00000597965 AMER1Q5JTC6 1135 aaPredicted RBP23.07■■□□□ 1.28
PNKP-210ENST00000597965 ARHGAP27Q6ZUM4 889 aa23.07■■□□□ 1.28
PNKP-210ENST00000597965 PIM2Q9P1W9 311 aa23.07■■□□□ 1.28
PNKP-210ENST00000597965 ZPR1O75312 459 aa23.06■■□□□ 1.28
PNKP-210ENST00000597965 SLC52A2Q9HAB3 445 aa23.06■■□□□ 1.28
PNKP-210ENST00000597965 BRCA1P38398 1863 aaKnown RBP23.03■■□□□ 1.28
PNKP-210ENST00000597965 TJP1Q07157 1748 aa23.03■■□□□ 1.28
PNKP-210ENST00000597965 KIF3CO14782 793 aa23.03■■□□□ 1.28
PNKP-210ENST00000597965 FKBP8Q14318 412 aa23.02■■□□□ 1.28
PNKP-210ENST00000597965 DALRD3Q5D0E6 543 aaKnown RBP23.02■■□□□ 1.28
PNKP-210ENST00000597965 ARFGEF1Q9Y6D6 1849 aa23.02■■□□□ 1.28
PNKP-210ENST00000597965 TOMM70O94826 608 aa23.01■■□□□ 1.27
PNKP-210ENST00000597965 INTS5Q6P9B9 1019 aaKnown RBP23.01■■□□□ 1.27
PNKP-210ENST00000597965 SRP68Q9UHB9 627 aaKnown RBP23.01■■□□□ 1.27
PNKP-210ENST00000597965 MRC1P22897 1456 aa23■■□□□ 1.27
PNKP-210ENST00000597965 RNMTO43148 476 aaKnown RBP23■■□□□ 1.27
PNKP-210ENST00000597965 DIAPH1O60610 1272 aaKnown RBP23■■□□□ 1.27
PNKP-210ENST00000597965 VSIG10Q8N0Z9 540 aa23■■□□□ 1.27
PNKP-210ENST00000597965 KIF7Q2M1P5 1343 aa23■■□□□ 1.27
PNKP-210ENST00000597965 KCNA3P22001 575 aa22.99■■□□□ 1.27
PNKP-210ENST00000597965 HMOX1P09601 288 aa22.98■■□□□ 1.27
PNKP-210ENST00000597965 APLP1P51693 650 aa22.98■■□□□ 1.27
PNKP-210ENST00000597965 DNAJC10Q8IXB1 793 aa22.98■■□□□ 1.27
PNKP-210ENST00000597965 LGR6Q9HBX8 967 aa22.98■■□□□ 1.27
PNKP-210ENST00000597965 POLRMTO00411 1230 aaKnown RBP22.97■■□□□ 1.27
PNKP-210ENST00000597965 CYP19A1P11511 503 aaPredicted RBP22.97■■□□□ 1.27
PNKP-210ENST00000597965 TM4SF1P30408 202 aa22.97■■□□□ 1.27
PNKP-210ENST00000597965 DDR1Q08345 913 aa22.97■■□□□ 1.27
PNKP-210ENST00000597965 SOS1Q07889 1333 aaPredicted RBP22.97■■□□□ 1.27
PNKP-210ENST00000597965 USPL1Q5W0Q7 1092 aa22.96■■□□□ 1.27
PNKP-210ENST00000597965 C16orf71Q8IYS4 520 aaPredicted RBP22.96■■□□□ 1.27
PNKP-210ENST00000597965 NARFQ9UHQ1 456 aa22.96■■□□□ 1.27
PNKP-210ENST00000597965 VIRMAQ69YN4 1812 aaKnown RBP22.96■■□□□ 1.27
PNKP-210ENST00000597965 PER1O15534 1290 aaPredicted RBP22.95■■□□□ 1.26
PNKP-210ENST00000597965 MTHFSDQ2M296 383 aaKnown RBP22.95■■□□□ 1.26
PNKP-210ENST00000597965 C9orf131Q5VYM1 1079 aa22.95■■□□□ 1.26
PNKP-210ENST00000597965 TTC5Q8N0Z6 440 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms