RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 ADAMTS7Q9UKP4 1686 aa14.89□□□□□ -0.03
VRK3-210ENST00000596121 LOC102724428A0A0B4J2F2 783 aa14.88□□□□□ -0.03
VRK3-210ENST00000596121 GNAT3A8MTJ3 354 aa14.88□□□□□ -0.03
VRK3-210ENST00000596121 SIK1P57059 783 aa14.88□□□□□ -0.03
VRK3-210ENST00000596121 CCDC184Q52MB2 194 aa14.88□□□□□ -0.03
VRK3-210ENST00000596121 AMIGO3Q86WK7 504 aa14.88□□□□□ -0.03
VRK3-210ENST00000596121 LINC00116Q8NCU8 138 aa14.88□□□□□ -0.03
VRK3-210ENST00000596121 MAP3K5Q99683 1374 aa14.87□□□□□ -0.03
VRK3-210ENST00000596121 SMIM5Q71RC9 77 aa14.87□□□□□ -0.03
VRK3-210ENST00000596121 CASZ1Q86V15 1759 aa14.87□□□□□ -0.03
VRK3-210ENST00000596121 MRC1P22897 1456 aa14.87□□□□□ -0.03
VRK3-210ENST00000596121 PNPLA7Q6ZV29 1317 aa14.87□□□□□ -0.03
VRK3-210ENST00000596121 SLC39A6Q13433 755 aa14.86□□□□□ -0.03
VRK3-210ENST00000596121 ZBTB7AO95365 584 aa14.85□□□□□ -0.03
VRK3-210ENST00000596121 ATP6V1AP38606 617 aa14.85□□□□□ -0.03
VRK3-210ENST00000596121 RBM42Q9BTD8 480 aaKnown RBP14.85□□□□□ -0.03
VRK3-210ENST00000596121 CEMIPQ8WUJ3 1361 aa14.85□□□□□ -0.03
VRK3-210ENST00000596121 PTCD1O75127 700 aaKnown RBP14.84□□□□□ -0.03
VRK3-210ENST00000596121 DCTN1Q14203 1278 aa14.84□□□□□ -0.03
VRK3-210ENST00000596121 MCM10Q7L590 875 aa14.84□□□□□ -0.03
VRK3-210ENST00000596121 TFCP2L1Q9NZI6 479 aa14.84□□□□□ -0.03
VRK3-210ENST00000596121 TAF1LQ8IZX4 1826 aa14.84□□□□□ -0.03
VRK3-210ENST00000596121 C5P01031 1676 aa14.84□□□□□ -0.03
VRK3-210ENST00000596121 VIRMAQ69YN4 1812 aaKnown RBP14.83□□□□□ -0.04
VRK3-210ENST00000596121 TUBGCP6Q96RT7 1819 aa14.83□□□□□ -0.04
VRK3-210ENST00000596121 COL23A1Q86Y22 540 aaPredicted RBP14.83□□□□□ -0.04
VRK3-210ENST00000596121 ADAMTS8Q9UP79 889 aa14.83□□□□□ -0.04
VRK3-210ENST00000596121 ATF5Q9Y2D1 282 aaPredicted RBP14.83□□□□□ -0.04
VRK3-210ENST00000596121 KCNQ3O43525 872 aa14.82□□□□□ -0.04
VRK3-210ENST00000596121 PTGER2P43116 358 aa14.82□□□□□ -0.04
VRK3-210ENST00000596121 LRP5O75197 1615 aa14.81□□□□□ -0.04
VRK3-210ENST00000596121 C4BP0C0L5 1744 aa14.81□□□□□ -0.04
VRK3-210ENST00000596121 NFE2L2Q16236 605 aa14.81□□□□□ -0.04
VRK3-210ENST00000596121 CCDC146Q8IYE0 955 aa14.81□□□□□ -0.04
VRK3-210ENST00000596121 KCPQ6ZWJ8 1503 aa14.81□□□□□ -0.04
VRK3-210ENST00000596121 HTATSF1O43719 755 aaKnown RBP14.8□□□□□ -0.04
VRK3-210ENST00000596121 SGIP1Q9BQI5 828 aa14.8□□□□□ -0.04
VRK3-210ENST00000596121 THUMPD2Q9BTF0 503 aaKnown RBP14.8□□□□□ -0.04
VRK3-210ENST00000596121 SPON1Q9HCB6 807 aa14.8□□□□□ -0.04
VRK3-210ENST00000596121 SIPA1L3O60292 1781 aaPredicted RBP14.79□□□□□ -0.04
VRK3-210ENST00000596121 TEFQ10587 303 aa14.79□□□□□ -0.04
VRK3-210ENST00000596121 DNAJC10Q8IXB1 793 aa14.79□□□□□ -0.04
VRK3-210ENST00000596121 AK7Q96M32 723 aa14.79□□□□□ -0.04
VRK3-210ENST00000596121 QSER1Q2KHR3 1735 aa14.78□□□□□ -0.04
VRK3-210ENST00000596121 ZNF831Q5JPB2 1677 aa14.78□□□□□ -0.04
VRK3-210ENST00000596121 ZNF790Q6PG37 636 aa14.78□□□□□ -0.04
VRK3-210ENST00000596121 ZNF496Q96IT1 587 aaPredicted RBP14.78□□□□□ -0.04
VRK3-210ENST00000596121 MTFR1LQ9H019 292 aa14.78□□□□□ -0.04
VRK3-210ENST00000596121 RRP7AQ9Y3A4 280 aaKnown RBP14.78□□□□□ -0.04
VRK3-210ENST00000596121 TJP1Q07157 1748 aa14.78□□□□□ -0.04
VRK3-210ENST00000596121 MAPK8IP3Q9UPT6 1336 aa14.77□□□□□ -0.04
VRK3-210ENST00000596121 MYH14Q7Z406 1995 aaKnown RBP14.77□□□□□ -0.04
VRK3-210ENST00000596121 DLG5Q8TDM6 1919 aa14.77□□□□□ -0.04
VRK3-210ENST00000596121 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.77□□□□□ -0.05
VRK3-210ENST00000596121 GNPATO15228 680 aa14.77□□□□□ -0.05
VRK3-210ENST00000596121 ANP32CO43423 234 aa14.77□□□□□ -0.05
VRK3-210ENST00000596121 PHF14O94880 888 aa14.77□□□□□ -0.05
VRK3-210ENST00000596121 TMPOP42166 694 aaKnown RBP14.77□□□□□ -0.05
VRK3-210ENST00000596121 WDR43Q15061 677 aaKnown RBP eCLIP14.77□□□□□ -0.05
VRK3-210ENST00000596121 RC3H1Q5TC82 1133 aaKnown RBP14.77□□□□□ -0.05
VRK3-210ENST00000596121 INTS5Q6P9B9 1019 aaKnown RBP14.77□□□□□ -0.05
VRK3-210ENST00000596121 RTF1Q92541 710 aaKnown RBP14.77□□□□□ -0.05
VRK3-210ENST00000596121 PNNQ9H307 717 aaKnown RBP14.77□□□□□ -0.05
VRK3-210ENST00000596121 MIS18AQ9NYP9 233 aa14.77□□□□□ -0.05
VRK3-210ENST00000596121 UBR3Q6ZT12 1888 aa14.77□□□□□ -0.05
VRK3-210ENST00000596121 CNTNAP4Q9C0A0 1308 aa14.76□□□□□ -0.05
VRK3-210ENST00000596121 COL5A3P25940 1745 aaPredicted RBP14.76□□□□□ -0.05
VRK3-210ENST00000596121 BTBD11A6QL63 1104 aa14.76□□□□□ -0.05
VRK3-210ENST00000596121 RIPK4P57078 832 aa14.76□□□□□ -0.05
VRK3-210ENST00000596121 RUNDC1Q96C34 613 aa14.76□□□□□ -0.05
VRK3-210ENST00000596121 UBR2Q8IWV8 1755 aa14.75□□□□□ -0.05
VRK3-210ENST00000596121 MSH5O43196 834 aa14.75□□□□□ -0.05
VRK3-210ENST00000596121 NEFMP07197 916 aa14.75□□□□□ -0.05
VRK3-210ENST00000596121 CYP19A1P11511 503 aaPredicted RBP14.75□□□□□ -0.05
VRK3-210ENST00000596121 CRKLP46109 303 aaKnown RBP14.75□□□□□ -0.05
VRK3-210ENST00000596121 PNISRQ8TF01 805 aaKnown RBP14.75□□□□□ -0.05
VRK3-210ENST00000596121 SLC16A10Q8TF71 515 aa14.75□□□□□ -0.05
VRK3-210ENST00000596121 RPS6KA4O75676 772 aa14.74□□□□□ -0.05
VRK3-210ENST00000596121 SSFA2P28290 1259 aa14.74□□□□□ -0.05
VRK3-210ENST00000596121 TAF7Q15545 349 aaPredicted RBP14.74□□□□□ -0.05
VRK3-210ENST00000596121 MSL1Q68DK7 614 aa14.74□□□□□ -0.05
VRK3-210ENST00000596121 FLAD1Q8NFF5 587 aa14.74□□□□□ -0.05
VRK3-210ENST00000596121 TRIM35Q9UPQ4 493 aa14.74□□□□□ -0.05
VRK3-210ENST00000596121 CICQ96RK0 1608 aaPredicted RBP14.74□□□□□ -0.05
VRK3-210ENST00000596121 HEG1Q9ULI3 1381 aa14.73□□□□□ -0.05
VRK3-210ENST00000596121 PRAMEF22A3QJZ6 481 aa14.73□□□□□ -0.05
VRK3-210ENST00000596121 HMGB2P26583 209 aaKnown RBP14.73□□□□□ -0.05
VRK3-210ENST00000596121 NEUROD2Q15784 382 aa14.73□□□□□ -0.05
VRK3-210ENST00000596121 TTC5Q8N0Z6 440 aa14.73□□□□□ -0.05
VRK3-210ENST00000596121 VSIG10Q8N0Z9 540 aa14.73□□□□□ -0.05
VRK3-210ENST00000596121 ARHGEF1Q92888 912 aaKnown RBP14.73□□□□□ -0.05
VRK3-210ENST00000596121 RTCBQ9Y3I0 505 aaKnown RBP14.72□□□□□ -0.05
VRK3-210ENST00000596121 COL24A1Q17RW2 1714 aa14.72□□□□□ -0.05
VRK3-210ENST00000596121 SENP3-EIF4A1A0A087X0R7 540 aa14.71□□□□□ -0.05
VRK3-210ENST00000596121 APAF1O14727 1248 aa14.71□□□□□ -0.05
VRK3-210ENST00000596121 TRAPPC3LQ5T215 181 aa14.71□□□□□ -0.05
VRK3-210ENST00000596121 FMNL2Q96PY5 1086 aa14.71□□□□□ -0.05
VRK3-210ENST00000596121 MRS2Q9HD23 443 aa14.71□□□□□ -0.05
VRK3-210ENST00000596121 CCDC87Q9NVE4 849 aa14.71□□□□□ -0.05
VRK3-210ENST00000596121 ZBTB1Q9Y2K1 713 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms