RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 PRKAR2BP31323 418 aa14.74□□□□□ -0.05
SHKBP1-206ENST00000595523 RALBP1Q15311 655 aa14.74□□□□□ -0.05
SHKBP1-206ENST00000595523 PHACTR3Q96KR7 559 aa14.74□□□□□ -0.05
SHKBP1-206ENST00000595523 LGR6Q9HBX8 967 aa14.74□□□□□ -0.05
SHKBP1-206ENST00000595523 PNPLA7Q6ZV29 1317 aa14.73□□□□□ -0.05
SHKBP1-206ENST00000595523 U2AF1L5P0DN76 240 aaPredicted RBP14.73□□□□□ -0.05
SHKBP1-206ENST00000595523 U2AF1Q01081 240 aaKnown RBP eCLIP14.73□□□□□ -0.05
SHKBP1-206ENST00000595523 NUDCQ9Y266 331 aa14.73□□□□□ -0.05
SHKBP1-206ENST00000595523 LOC102724428A0A0B4J2F2 783 aa14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 RNMTO43148 476 aaKnown RBP14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 SIK1P57059 783 aa14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 CABP4P57796 275 aa14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 NFATC2IPQ8NCF5 419 aa14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 SLC4A9Q96Q91 983 aa14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 MAP3K5Q99683 1374 aa14.72□□□□□ -0.05
SHKBP1-206ENST00000595523 ZBTB7AO95365 584 aa14.71□□□□□ -0.05
SHKBP1-206ENST00000595523 ITPK1Q13572 414 aa14.71□□□□□ -0.05
SHKBP1-206ENST00000595523 KCPQ6ZWJ8 1503 aa14.71□□□□□ -0.06
SHKBP1-206ENST00000595523 MYBBP1AQ9BQG0 1328 aaKnown RBP14.7□□□□□ -0.06
SHKBP1-206ENST00000595523 FCHSD2O94868 740 aa14.7□□□□□ -0.06
SHKBP1-206ENST00000595523 AMIGO3Q86WK7 504 aa14.7□□□□□ -0.06
SHKBP1-206ENST00000595523 LINC00116Q8NCU8 138 aa14.7□□□□□ -0.06
SHKBP1-206ENST00000595523 SLC52A2Q9HAB3 445 aa14.7□□□□□ -0.06
SHKBP1-206ENST00000595523 SPON1Q9HCB6 807 aa14.7□□□□□ -0.06
SHKBP1-206ENST00000595523 PTGER2P43116 358 aa14.69□□□□□ -0.06
SHKBP1-206ENST00000595523 GAS2L2Q8NHY3 880 aa14.69□□□□□ -0.06
SHKBP1-206ENST00000595523 TFCP2L1Q9NZI6 479 aa14.69□□□□□ -0.06
SHKBP1-206ENST00000595523 C4AP0C0L4 1744 aa14.69□□□□□ -0.06
SHKBP1-206ENST00000595523 ZNF316A6NFI3 1004 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 GNAT3A8MTJ3 354 aa14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 ATP6V1AP38606 617 aa14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 IL17REQ8NFR9 667 aa14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 SGIP1Q9BQI5 828 aa14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 PRKRIP1Q9H875 184 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 ATF5Q9Y2D1 282 aaPredicted RBP14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 CEMIPQ8WUJ3 1361 aa14.68□□□□□ -0.06
SHKBP1-206ENST00000595523 COL23A1Q86Y22 540 aaPredicted RBP14.67□□□□□ -0.06
SHKBP1-206ENST00000595523 PLEKHF1Q96S99 279 aa14.67□□□□□ -0.06
SHKBP1-206ENST00000595523 MTFR1LQ9H019 292 aa14.67□□□□□ -0.06
SHKBP1-206ENST00000595523 SMIM5Q71RC9 77 aa14.66□□□□□ -0.06
SHKBP1-206ENST00000595523 RBM42Q9BTD8 480 aaKnown RBP14.66□□□□□ -0.06
SHKBP1-206ENST00000595523 PTCD1O75127 700 aaKnown RBP14.65□□□□□ -0.06
SHKBP1-206ENST00000595523 SLC39A6Q13433 755 aa14.65□□□□□ -0.06
SHKBP1-206ENST00000595523 SLC16A10Q8TF71 515 aa14.64□□□□□ -0.07
SHKBP1-206ENST00000595523 AK7Q96M32 723 aa14.64□□□□□ -0.07
SHKBP1-206ENST00000595523 KDM3BQ7LBC6 1761 aa14.64□□□□□ -0.07
SHKBP1-206ENST00000595523 CNTNAP4Q9C0A0 1308 aa14.63□□□□□ -0.07
SHKBP1-206ENST00000595523 GNPATO15228 680 aa14.62□□□□□ -0.07
SHKBP1-206ENST00000595523 HMGB2P26583 209 aaKnown RBP14.62□□□□□ -0.07
SHKBP1-206ENST00000595523 MCM10Q7L590 875 aa14.62□□□□□ -0.07
SHKBP1-206ENST00000595523 GOLGB1Q14789 3259 aaKnown RBP14.62□□□□□ -0.07
SHKBP1-206ENST00000595523 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-206ENST00000595523 PHF14O94880 888 aa14.61□□□□□ -0.07
SHKBP1-206ENST00000595523 SSFA2P28290 1259 aa14.61□□□□□ -0.07
SHKBP1-206ENST00000595523 TEFQ10587 303 aa14.61□□□□□ -0.07
SHKBP1-206ENST00000595523 DCTN1Q14203 1278 aa14.61□□□□□ -0.07
SHKBP1-206ENST00000595523 UTRNP46939 3433 aa14.61□□□□□ -0.07
SHKBP1-206ENST00000595523 RC3H1Q5TC82 1133 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-206ENST00000595523 FLAD1Q8NFF5 587 aa14.6□□□□□ -0.07
SHKBP1-206ENST00000595523 PPP1R1BQ9UD71 204 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-206ENST00000595523 MSH5O43196 834 aa14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 HTATSF1O43719 755 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 CRKLP46109 303 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 NFE2L2Q16236 605 aa14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 MSL1Q68DK7 614 aa14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 ZNF790Q6PG37 636 aa14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 DNAJC10Q8IXB1 793 aa14.59□□□□□ -0.07
SHKBP1-206ENST00000595523 LAMB4A4D0S4 1761 aa14.58□□□□□ -0.08
SHKBP1-206ENST00000595523 KCNQ3O43525 872 aa14.58□□□□□ -0.08
SHKBP1-206ENST00000595523 INTS5Q6P9B9 1019 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-206ENST00000595523 ZNF496Q96IT1 587 aaPredicted RBP14.58□□□□□ -0.08
SHKBP1-206ENST00000595523 ARXQ96QS3 562 aa14.58□□□□□ -0.08
SHKBP1-206ENST00000595523 RPS6KA4O75676 772 aa14.57□□□□□ -0.08
SHKBP1-206ENST00000595523 CYP19A1P11511 503 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-206ENST00000595523 CCDC184Q52MB2 194 aa14.57□□□□□ -0.08
SHKBP1-206ENST00000595523 RTF1Q92541 710 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-206ENST00000595523 MAPK8IP3Q9UPT6 1336 aa14.57□□□□□ -0.08
SHKBP1-206ENST00000595523 HEG1Q9ULI3 1381 aa14.57□□□□□ -0.08
SHKBP1-206ENST00000595523 BTBD11A6QL63 1104 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 NEFMP07197 916 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 CCDC146Q8IYE0 955 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 TTC5Q8N0Z6 440 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 VSIG10Q8N0Z9 540 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 THUMPD2Q9BTF0 503 aaKnown RBP14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 FHDC1Q9C0D6 1143 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 PNNQ9H307 717 aaKnown RBP14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 ADAMTS8Q9UP79 889 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 RTCBQ9Y3I0 505 aaKnown RBP14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 KIF13BQ9NQT8 1826 aa14.56□□□□□ -0.08
SHKBP1-206ENST00000595523 ARHGEF1Q92888 912 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-206ENST00000595523 ADRA2BP18089 450 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 POLD1P28340 1107 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 WDR43Q15061 677 aaKnown RBP eCLIP14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 TRAPPC3LQ5T215 181 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 SYT17Q9BSW7 474 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 CCDC87Q9NVE4 849 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 SCN7AQ01118 1682 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 KIAA1551Q9HCM1 1747 aa14.54□□□□□ -0.08
SHKBP1-206ENST00000595523 AFDNP55196 1824 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-206ENST00000595523 BCORQ6W2J9 1755 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms