RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 U2AF1Q01081 240 aaKnown RBP eCLIP21.04■□□□□ 0.96
LIG3-215ENST00000592690 ZBTB7AO95365 584 aa21.03■□□□□ 0.96
LIG3-215ENST00000592690 LGR6Q9HBX8 967 aa21.03■□□□□ 0.96
LIG3-215ENST00000592690 PNPLA7Q6ZV29 1317 aa21.03■□□□□ 0.96
LIG3-215ENST00000592690 COL24A1Q17RW2 1714 aa21.02■□□□□ 0.96
LIG3-215ENST00000592690 LOC102724428A0A0B4J2F2 783 aa21.02■□□□□ 0.96
LIG3-215ENST00000592690 RNMTO43148 476 aaKnown RBP21.02■□□□□ 0.96
LIG3-215ENST00000592690 SIK1P57059 783 aa21.02■□□□□ 0.96
LIG3-215ENST00000592690 NFATC2IPQ8NCF5 419 aa21.02■□□□□ 0.96
LIG3-215ENST00000592690 PHACTR3Q96KR7 559 aa21.02■□□□□ 0.96
LIG3-215ENST00000592690 SPON1Q9HCB6 807 aa21.02■□□□□ 0.96
LIG3-215ENST00000592690 TJP1Q07157 1748 aa21.01■□□□□ 0.95
LIG3-215ENST00000592690 TFCP2L1Q9NZI6 479 aa21.01■□□□□ 0.95
LIG3-215ENST00000592690 UBR2Q8IWV8 1755 aa21■□□□□ 0.95
LIG3-215ENST00000592690 MAP3K5Q99683 1374 aa21■□□□□ 0.95
LIG3-215ENST00000592690 GAS2L2Q8NHY3 880 aa21■□□□□ 0.95
LIG3-215ENST00000592690 CICQ96RK0 1608 aaPredicted RBP21■□□□□ 0.95
LIG3-215ENST00000592690 ITPK1Q13572 414 aa20.99■□□□□ 0.95
LIG3-215ENST00000592690 LINC00116Q8NCU8 138 aa20.99■□□□□ 0.95
LIG3-215ENST00000592690 SLC4A9Q96Q91 983 aa20.99■□□□□ 0.95
LIG3-215ENST00000592690 SLC52A2Q9HAB3 445 aa20.99■□□□□ 0.95
LIG3-215ENST00000592690 MYH14Q7Z406 1995 aaKnown RBP20.99■□□□□ 0.95
LIG3-215ENST00000592690 MYBBP1AQ9BQG0 1328 aaKnown RBP20.99■□□□□ 0.95
LIG3-215ENST00000592690 FCHSD2O94868 740 aa20.98■□□□□ 0.95
LIG3-215ENST00000592690 ATP6V1AP38606 617 aa20.98■□□□□ 0.95
LIG3-215ENST00000592690 ATF5Q9Y2D1 282 aaPredicted RBP20.98■□□□□ 0.95
LIG3-215ENST00000592690 RBM42Q9BTD8 480 aaKnown RBP20.97■□□□□ 0.95
LIG3-215ENST00000592690 ZNF316A6NFI3 1004 aaPredicted RBP20.96■□□□□ 0.95
LIG3-215ENST00000592690 GNAT3A8MTJ3 354 aa20.96■□□□□ 0.95
LIG3-215ENST00000592690 MTFR1LQ9H019 292 aa20.96■□□□□ 0.95
LIG3-215ENST00000592690 KCPQ6ZWJ8 1503 aa20.95■□□□□ 0.94
LIG3-215ENST00000592690 PTGER2P43116 358 aa20.95■□□□□ 0.94
LIG3-215ENST00000592690 AMIGO3Q86WK7 504 aa20.95■□□□□ 0.94
LIG3-215ENST00000592690 PTCD1O75127 700 aaKnown RBP20.94■□□□□ 0.94
LIG3-215ENST00000592690 COL23A1Q86Y22 540 aaPredicted RBP20.94■□□□□ 0.94
LIG3-215ENST00000592690 IL17REQ8NFR9 667 aa20.94■□□□□ 0.94
LIG3-215ENST00000592690 AK7Q96M32 723 aa20.94■□□□□ 0.94
LIG3-215ENST00000592690 PRKRIP1Q9H875 184 aaPredicted RBP20.94■□□□□ 0.94
LIG3-215ENST00000592690 HMGB2P26583 209 aaKnown RBP20.92■□□□□ 0.94
LIG3-215ENST00000592690 SLC39A6Q13433 755 aa20.92■□□□□ 0.94
LIG3-215ENST00000592690 SMIM5Q71RC9 77 aa20.92■□□□□ 0.94
LIG3-215ENST00000592690 SGIP1Q9BQI5 828 aa20.92■□□□□ 0.94
LIG3-215ENST00000592690 PPP1R1BQ9UD71 204 aaPredicted RBP20.92■□□□□ 0.94
LIG3-215ENST00000592690 CEMIPQ8WUJ3 1361 aa20.92■□□□□ 0.94
LIG3-215ENST00000592690 C4AP0C0L4 1744 aa20.92■□□□□ 0.94
LIG3-215ENST00000592690 SLC16A10Q8TF71 515 aa20.91■□□□□ 0.94
LIG3-215ENST00000592690 MSH5O43196 834 aa20.9■□□□□ 0.94
LIG3-215ENST00000592690 PLEKHF1Q96S99 279 aa20.9■□□□□ 0.94
LIG3-215ENST00000592690 GNPATO15228 680 aa20.89■□□□□ 0.93
LIG3-215ENST00000592690 PHF14O94880 888 aa20.89■□□□□ 0.93
LIG3-215ENST00000592690 TEFQ10587 303 aa20.89■□□□□ 0.93
LIG3-215ENST00000592690 CNTNAP4Q9C0A0 1308 aa20.87■□□□□ 0.93
LIG3-215ENST00000592690 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.87■□□□□ 0.93
LIG3-215ENST00000592690 MCM10Q7L590 875 aa20.87■□□□□ 0.93
LIG3-215ENST00000592690 FLAD1Q8NFF5 587 aa20.87■□□□□ 0.93
LIG3-215ENST00000592690 SSFA2P28290 1259 aa20.86■□□□□ 0.93
LIG3-215ENST00000592690 DCTN1Q14203 1278 aa20.86■□□□□ 0.93
LIG3-215ENST00000592690 MSL1Q68DK7 614 aa20.86■□□□□ 0.93
LIG3-215ENST00000592690 NEFMP07197 916 aa20.85■□□□□ 0.93
LIG3-215ENST00000592690 DNAJC10Q8IXB1 793 aa20.85■□□□□ 0.93
LIG3-215ENST00000592690 RTF1Q92541 710 aaKnown RBP20.85■□□□□ 0.93
LIG3-215ENST00000592690 MAPK8IP3Q9UPT6 1336 aa20.84■□□□□ 0.93
LIG3-215ENST00000592690 RC3H1Q5TC82 1133 aaKnown RBP20.84■□□□□ 0.93
LIG3-215ENST00000592690 KDM3BQ7LBC6 1761 aa20.84■□□□□ 0.93
LIG3-215ENST00000592690 CRKLP46109 303 aaKnown RBP20.83■□□□□ 0.93
LIG3-215ENST00000592690 NFE2L2Q16236 605 aa20.83■□□□□ 0.93
LIG3-215ENST00000592690 TTC5Q8N0Z6 440 aa20.83■□□□□ 0.93
LIG3-215ENST00000592690 ARXQ96QS3 562 aa20.83■□□□□ 0.93
LIG3-215ENST00000592690 HTATSF1O43719 755 aaKnown RBP20.82■□□□□ 0.92
LIG3-215ENST00000592690 ZNF790Q6PG37 636 aa20.82■□□□□ 0.92
LIG3-215ENST00000592690 FHDC1Q9C0D6 1143 aaPredicted RBP20.82■□□□□ 0.92
LIG3-215ENST00000592690 PNNQ9H307 717 aaKnown RBP20.82■□□□□ 0.92
LIG3-215ENST00000592690 RTCBQ9Y3I0 505 aaKnown RBP20.82■□□□□ 0.92
LIG3-215ENST00000592690 KCNQ3O43525 872 aa20.81■□□□□ 0.92
LIG3-215ENST00000592690 POLD1P28340 1107 aa20.81■□□□□ 0.92
LIG3-215ENST00000592690 ZNF496Q96IT1 587 aaPredicted RBP20.81■□□□□ 0.92
LIG3-215ENST00000592690 BTBD11A6QL63 1104 aa20.8■□□□□ 0.92
LIG3-215ENST00000592690 RPS6KA4O75676 772 aa20.8■□□□□ 0.92
LIG3-215ENST00000592690 WDR43Q15061 677 aaKnown RBP eCLIP20.8■□□□□ 0.92
LIG3-215ENST00000592690 CCDC146Q8IYE0 955 aa20.8■□□□□ 0.92
LIG3-215ENST00000592690 HEG1Q9ULI3 1381 aa20.8■□□□□ 0.92
LIG3-215ENST00000592690 CYP19A1P11511 503 aaPredicted RBP20.79■□□□□ 0.92
LIG3-215ENST00000592690 INTS5Q6P9B9 1019 aaKnown RBP20.79■□□□□ 0.92
LIG3-215ENST00000592690 VSIG10Q8N0Z9 540 aa20.79■□□□□ 0.92
LIG3-215ENST00000592690 TRAPPC3LQ5T215 181 aa20.78■□□□□ 0.92
LIG3-215ENST00000592690 ARHGEF1Q92888 912 aaKnown RBP20.78■□□□□ 0.92
LIG3-215ENST00000592690 CCDC87Q9NVE4 849 aa20.78■□□□□ 0.92
LIG3-215ENST00000592690 ADAMTS8Q9UP79 889 aa20.78■□□□□ 0.92
LIG3-215ENST00000592690 LAMB4A4D0S4 1761 aa20.77■□□□□ 0.92
LIG3-215ENST00000592690 ADRA2BP18089 450 aa20.77■□□□□ 0.92
LIG3-215ENST00000592690 SYT17Q9BSW7 474 aa20.77■□□□□ 0.92
LIG3-215ENST00000592690 THUMPD2Q9BTF0 503 aaKnown RBP20.77■□□□□ 0.92
LIG3-215ENST00000592690 CCDC184Q52MB2 194 aa20.76■□□□□ 0.91
LIG3-215ENST00000592690 KLHL34Q8N239 644 aa20.76■□□□□ 0.91
LIG3-215ENST00000592690 FMNL2Q96PY5 1086 aa20.76■□□□□ 0.91
LIG3-215ENST00000592690 TMPOP42166 694 aaKnown RBP20.75■□□□□ 0.91
LIG3-215ENST00000592690 ZBTB1Q9Y2K1 713 aa20.75■□□□□ 0.91
LIG3-215ENST00000592690 SOS1Q07889 1333 aaPredicted RBP20.75■□□□□ 0.91
LIG3-215ENST00000592690 RFC4P35249 363 aa20.74■□□□□ 0.91
LIG3-215ENST00000592690 RIPK4P57078 832 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms