RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 THAP11Q96EK4 314 aa12.46□□□□□ -0.41
SMAD4-209ENST00000589941 BLMP54132 1417 aaPredicted RBP12.45□□□□□ -0.42
SMAD4-209ENST00000589941 FDX1P10109 184 aa12.45□□□□□ -0.42
SMAD4-209ENST00000589941 NGLY1Q96IV0 654 aa12.45□□□□□ -0.42
SMAD4-209ENST00000589941 LIMD1Q9UGP4 676 aa12.45□□□□□ -0.42
SMAD4-209ENST00000589941 DCCP43146 1447 aa12.45□□□□□ -0.42
SMAD4-209ENST00000589941 RIMS2Q9UQ26 1411 aa12.45□□□□□ -0.42
SMAD4-209ENST00000589941 ATF3P18847 181 aa12.44□□□□□ -0.42
SMAD4-209ENST00000589941 RIC3Q7Z5B4 369 aa12.44□□□□□ -0.42
SMAD4-209ENST00000589941 SYMPKQ92797 1274 aaKnown RBP12.44□□□□□ -0.42
SMAD4-209ENST00000589941 POLR3EQ9NVU0 708 aa12.44□□□□□ -0.42
SMAD4-209ENST00000589941 PCDHB15Q9Y5E8 787 aa12.44□□□□□ -0.42
SMAD4-209ENST00000589941 CAMTA1Q9Y6Y1 1673 aa12.43□□□□□ -0.42
SMAD4-209ENST00000589941 SPTLC1O15269 473 aa12.43□□□□□ -0.42
SMAD4-209ENST00000589941 BRICD5Q6PL45 260 aa12.43□□□□□ -0.42
SMAD4-209ENST00000589941 USP21Q9UK80 565 aa12.43□□□□□ -0.42
SMAD4-209ENST00000589941 ERBINQ96RT1 1412 aa12.43□□□□□ -0.42
SMAD4-209ENST00000589941 IFFO2Q5TF58 517 aa12.42□□□□□ -0.42
SMAD4-209ENST00000589941 RSPH6AQ9H0K4 717 aa12.42□□□□□ -0.42
SMAD4-209ENST00000589941 C19orf44Q9H6X5 657 aa12.42□□□□□ -0.42
SMAD4-209ENST00000589941 TNS1Q9HBL0 1735 aaKnown RBP12.42□□□□□ -0.42
SMAD4-209ENST00000589941 HRCP23327 699 aa12.41□□□□□ -0.42
SMAD4-209ENST00000589941 SH3D19Q5HYK7 790 aa12.41□□□□□ -0.42
SMAD4-209ENST00000589941 TRPC5Q9UL62 973 aaPredicted RBP12.41□□□□□ -0.42
SMAD4-209ENST00000589941 TSPY4P0CV99 314 aa12.4□□□□□ -0.42
SMAD4-209ENST00000589941 TSPY10P0CW01 314 aa12.4□□□□□ -0.42
SMAD4-209ENST00000589941 CLK2P49760 499 aaKnown RBP12.4□□□□□ -0.42
SMAD4-209ENST00000589941 CCDC125Q86Z20 511 aa12.4□□□□□ -0.42
SMAD4-209ENST00000589941 SPSB2Q99619 263 aa12.4□□□□□ -0.42
SMAD4-209ENST00000589941 SALL2Q9Y467 1007 aaPredicted RBP12.4□□□□□ -0.42
SMAD4-209ENST00000589941 KIF15Q9NS87 1388 aa12.4□□□□□ -0.42
SMAD4-209ENST00000589941 MYOM2P54296 1465 aa12.4□□□□□ -0.43
SMAD4-209ENST00000589941 PTCH1Q13635 1447 aa12.39□□□□□ -0.43
SMAD4-209ENST00000589941 FMNL1O95466 1100 aaPredicted RBP12.39□□□□□ -0.43
SMAD4-209ENST00000589941 CSPP1Q1MSJ5 1256 aa12.39□□□□□ -0.43
SMAD4-209ENST00000589941 PROCA1Q8NCQ7 364 aaPredicted RBP12.39□□□□□ -0.43
SMAD4-209ENST00000589941 LRRC59Q96AG4 307 aaKnown RBP12.39□□□□□ -0.43
SMAD4-209ENST00000589941 PTPN23Q9H3S7 1636 aa12.39□□□□□ -0.43
SMAD4-209ENST00000589941 RGPD1P0DJD0 1748 aa12.39□□□□□ -0.43
SMAD4-209ENST00000589941 PLCH1Q4KWH8 1693 aa12.38□□□□□ -0.43
SMAD4-209ENST00000589941 ADH1BP00325 375 aa12.38□□□□□ -0.43
SMAD4-209ENST00000589941 YY1P25490 414 aa12.38□□□□□ -0.43
SMAD4-209ENST00000589941 GJA5P36382 358 aa12.38□□□□□ -0.43
SMAD4-209ENST00000589941 SKIV2LQ15477 1246 aaKnown RBP12.38□□□□□ -0.43
SMAD4-209ENST00000589941 Q3C1V9 767 aa12.38□□□□□ -0.43
SMAD4-209ENST00000589941 FAM160A2Q8N612 972 aaPredicted RBP12.38□□□□□ -0.43
SMAD4-209ENST00000589941 RALGAPBQ86X10 1494 aa12.38□□□□□ -0.43
SMAD4-209ENST00000589941 FNBP4Q8N3X1 1017 aaPredicted RBP12.37□□□□□ -0.43
SMAD4-209ENST00000589941 C6orf229H3BNL8 230 aa12.36□□□□□ -0.43
SMAD4-209ENST00000589941 QPCTQ16769 361 aa12.36□□□□□ -0.43
SMAD4-209ENST00000589941 CABLES1Q8TDN4 633 aa12.36□□□□□ -0.43
SMAD4-209ENST00000589941 TBX22Q9Y458 520 aa12.36□□□□□ -0.43
SMAD4-209ENST00000589941 ADGRL3Q9HAR2 1447 aa12.36□□□□□ -0.43
SMAD4-209ENST00000589941 E9PCH4 1651 aa12.35□□□□□ -0.43
SMAD4-209ENST00000589941 PPP1R15AO75807 674 aaPredicted RBP12.35□□□□□ -0.43
SMAD4-209ENST00000589941 PRDM9Q9NQV7 894 aa12.35□□□□□ -0.43
SMAD4-209ENST00000589941 ABCA3Q99758 1704 aa12.34□□□□□ -0.43
SMAD4-209ENST00000589941 PIK3R4Q99570 1358 aa12.34□□□□□ -0.43
SMAD4-209ENST00000589941 S1PR4O95977 384 aa12.34□□□□□ -0.43
SMAD4-209ENST00000589941 TUSC1Q2TAM9 212 aa12.34□□□□□ -0.43
SMAD4-209ENST00000589941 C1orf167Q5SNV9 1468 aa12.34□□□□□ -0.43
SMAD4-209ENST00000589941 MTMR2Q13614 643 aa12.33□□□□□ -0.44
SMAD4-209ENST00000589941 PPP1R18Q6NYC8 613 aa12.33□□□□□ -0.44
SMAD4-209ENST00000589941 USB1Q9BQ65 265 aaKnown RBP12.33□□□□□ -0.44
SMAD4-209ENST00000589941 SLC6A16Q9GZN6 736 aa12.33□□□□□ -0.44
SMAD4-209ENST00000589941 IQGAP3Q86VI3 1631 aa12.33□□□□□ -0.44
SMAD4-209ENST00000589941 USP32Q8NFA0 1604 aa12.33□□□□□ -0.44
SMAD4-209ENST00000589941 A0A0G2JS52 829 aa12.32□□□□□ -0.44
SMAD4-209ENST00000589941 LILRB3O75022 631 aa12.32□□□□□ -0.44
SMAD4-209ENST00000589941 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.32□□□□□ -0.44
SMAD4-209ENST00000589941 GOPCQ9HD26 462 aa12.32□□□□□ -0.44
SMAD4-209ENST00000589941 RREB1Q92766 1687 aa12.32□□□□□ -0.44
SMAD4-209ENST00000589941 KANK1Q14678 1352 aa12.31□□□□□ -0.44
SMAD4-209ENST00000589941 NUP188Q5SRE5 1749 aa12.31□□□□□ -0.44
SMAD4-209ENST00000589941 PPEF1O14829 653 aaPredicted RBP12.31□□□□□ -0.44
SMAD4-209ENST00000589941 MSS51Q4VC12 460 aa12.31□□□□□ -0.44
SMAD4-209ENST00000589941 RETREG3Q86VR2 466 aa12.31□□□□□ -0.44
SMAD4-209ENST00000589941 ZBTB3Q9H5J0 574 aa12.31□□□□□ -0.44
SMAD4-209ENST00000589941 AMOTL2Q9Y2J4 779 aa12.31□□□□□ -0.44
SMAD4-209ENST00000589941 ABCC5O15440 1437 aa12.3□□□□□ -0.44
SMAD4-209ENST00000589941 RPRD2Q5VT52 1461 aaKnown RBP12.3□□□□□ -0.44
SMAD4-209ENST00000589941 PXDNQ92626 1479 aa12.3□□□□□ -0.44
SMAD4-209ENST00000589941 RTL5Q5HYW3 569 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-209ENST00000589941 PRPF38BQ5VTL8 546 aaKnown RBP12.3□□□□□ -0.44
SMAD4-209ENST00000589941 GJD4Q96KN9 370 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-209ENST00000589941 NWD2Q9ULI1 1742 aa12.3□□□□□ -0.44
SMAD4-209ENST00000589941 SLIT2O94813 1529 aa12.3□□□□□ -0.44
SMAD4-209ENST00000589941 SOS2Q07890 1332 aaPredicted RBP12.3□□□□□ -0.44
SMAD4-209ENST00000589941 NRAPQ86VF7 1730 aa12.29□□□□□ -0.44
SMAD4-209ENST00000589941 CFAP99D6REC4 459 aa12.29□□□□□ -0.44
SMAD4-209ENST00000589941 RRP7BPQ9NSQ0 103 aa12.29□□□□□ -0.44
SMAD4-209ENST00000589941 MYOM3Q5VTT5 1437 aa12.28□□□□□ -0.44
SMAD4-209ENST00000589941 R3HDM1Q15032 1099 aaKnown RBP12.28□□□□□ -0.44
SMAD4-209ENST00000589941 PRR7Q8TB68 274 aa12.28□□□□□ -0.44
SMAD4-209ENST00000589941 PCMTD1Q96MG8 357 aaPredicted RBP12.28□□□□□ -0.44
SMAD4-209ENST00000589941 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.28□□□□□ -0.44
SMAD4-209ENST00000589941 RNF223E7ERA6 249 aa12.27□□□□□ -0.45
SMAD4-209ENST00000589941 SLC52A1Q9NWF4 448 aa12.27□□□□□ -0.45
SMAD4-209ENST00000589941 CEP350Q5VT06 3117 aa12.27□□□□□ -0.45
SMAD4-209ENST00000589941 METP08581 1390 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms