RNA–Protein interactions for RNA: ENST00000589677.5

SMARCA4-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMARCA4, Length 5,181 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-214ENST00000589677 FERMT3Q86UX7 667 aa17.09■□□□□ 0.33
SMARCA4-214ENST00000589677 DYDC1Q8WWB3 177 aa17.09■□□□□ 0.33
SMARCA4-214ENST00000589677 SSH1Q8WYL5 1049 aa17.09■□□□□ 0.33
SMARCA4-214ENST00000589677 C9orf84Q5VXU9 1444 aa17.09■□□□□ 0.33
SMARCA4-214ENST00000589677 MAP4K4O95819 1239 aaPredicted RBP17.09■□□□□ 0.33
SMARCA4-214ENST00000589677 DNAAF4Q8WXU2 420 aa17.09■□□□□ 0.33
SMARCA4-214ENST00000589677 RAB3GAP1Q15042 981 aa17.08■□□□□ 0.33
SMARCA4-214ENST00000589677 SUPT6HQ7KZ85 1726 aaKnown RBP17.08■□□□□ 0.33
SMARCA4-214ENST00000589677 SMC5Q8IY18 1101 aa17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 SLC12A5Q9H2X9 1139 aa17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 PRM3Q9NNZ6 103 aa17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 TBC1D2BQ9UPU7 963 aa17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 CKAP2LQ8IYA6 745 aa17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 AFAP1Q8N556 730 aa17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 ZNF397Q8NF99 534 aaPredicted RBP17.08■□□□□ 0.32
SMARCA4-214ENST00000589677 HCLS1P14317 486 aaPredicted RBP17.07■□□□□ 0.32
SMARCA4-214ENST00000589677 ZNF165P49910 485 aa17.07■□□□□ 0.32
SMARCA4-214ENST00000589677 STX6O43752 255 aa17.07■□□□□ 0.32
SMARCA4-214ENST00000589677 IMMTQ16891 758 aaKnown RBP17.07■□□□□ 0.32
SMARCA4-214ENST00000589677 NOL7Q9UMY1 257 aaKnown RBP17.07■□□□□ 0.32
SMARCA4-214ENST00000589677 HDAC1Q13547 482 aaPredicted RBP17.07■□□□□ 0.32
SMARCA4-214ENST00000589677 IQGAP2Q13576 1575 aa17.06■□□□□ 0.32
SMARCA4-214ENST00000589677 MNAT1P51948 309 aa17.06■□□□□ 0.32
SMARCA4-214ENST00000589677 IPO4Q8TEX9 1081 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-214ENST00000589677 RAB11FIP3O75154 756 aa17.06■□□□□ 0.32
SMARCA4-214ENST00000589677 AIMP1Q12904 312 aaKnown RBP17.06■□□□□ 0.32
SMARCA4-214ENST00000589677 ZNF830Q96NB3 372 aaPredicted RBP17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 SRRTQ9BXP5 876 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 KDM4AO75164 1064 aa17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 CTNNA3Q9UI47 895 aa17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 TAF4BQ92750 862 aa17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 GDPD2Q9HCC8 539 aa17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 EPRSP07814 1512 aaKnown RBP17.05■□□□□ 0.32
SMARCA4-214ENST00000589677 DAPK1P53355 1430 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 SLU7O95391 586 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 PRIM1P49642 420 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 ARFGAP3Q9NP61 516 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 ENOX2Q16206 610 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 TMEM132EQ6IEE7 984 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 TAX1BP1Q86VP1 789 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 CCAR1Q8IX12 1150 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 CDK5RAP3Q96JB5 506 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 RNF187Q5TA31 235 aaPredicted RBP17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 GLRX3O76003 335 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 NFE2L2Q16236 605 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 TMC6Q7Z403 805 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 FAM200AQ8TCP9 573 aa17.04■□□□□ 0.32
SMARCA4-214ENST00000589677 SRGAP3O43295 1099 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 HDGFL1Q5TGJ6 251 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 VPS37DQ86XT2 251 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 AACSQ86V21 672 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 WASF1Q92558 559 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 TRIM27P14373 513 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 SLC26A8Q96RN1 970 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 TCEAL9Q9UHQ7 104 aa17.03■□□□□ 0.32
SMARCA4-214ENST00000589677 SEPT7Q16181 437 aaKnown RBP17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 IL1RAPL2Q9NP60 686 aa17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 G3V3G9 751 aa17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 EIF5P55010 431 aaKnown RBP17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 DCAF8Q5TAQ9 597 aa17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 KIF1BPQ96EK5 621 aa17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.02■□□□□ 0.327e-8■■□□□ 12
SMARCA4-214ENST00000589677 CEP131Q9UPN4 1083 aa17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 NEFHP12036 1026 aa17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 PRPF40BQ6NWY9 871 aaKnown RBP17.02■□□□□ 0.32
SMARCA4-214ENST00000589677 NUCB1Q02818 461 aa17.02■□□□□ 0.31
SMARCA4-214ENST00000589677 CCDC186Q7Z3E2 898 aa17.02■□□□□ 0.31
SMARCA4-214ENST00000589677 CCDC158Q5M9N0 1113 aa17.01■□□□□ 0.31
SMARCA4-214ENST00000589677 ANKRD18AQ8IVF6 992 aa17.01■□□□□ 0.31
SMARCA4-214ENST00000589677 SPA17Q15506 151 aa17.01■□□□□ 0.31
SMARCA4-214ENST00000589677 EXOC6BQ9Y2D4 811 aa17.01■□□□□ 0.31
SMARCA4-214ENST00000589677 SKILP12757 684 aa17.01■□□□□ 0.31
SMARCA4-214ENST00000589677 TTC12Q9H892 705 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-214ENST00000589677 GABPB1Q06547 395 aaPredicted RBP17■□□□□ 0.31
SMARCA4-214ENST00000589677 LUZP1Q86V48 1076 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 ZSCAN22P10073 491 aaPredicted RBP17■□□□□ 0.31
SMARCA4-214ENST00000589677 GJB2P29033 226 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 ZFYVE27Q5T4F4 411 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 TTC22Q5TAA0 569 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 BIVM-ERCC5R4GMW8 1640 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 CCDC69A6NI79 296 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 SMARCA5O60264 1052 aaPredicted RBP17■□□□□ 0.31
SMARCA4-214ENST00000589677 SYCP1Q15431 976 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 TMX3Q96JJ7 454 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 GIMAP6Q6P9H5 292 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 MAP2K1Q02750 393 aaPredicted RBP17■□□□□ 0.31
SMARCA4-214ENST00000589677 RASSF4Q9H2L5 321 aa17■□□□□ 0.31
SMARCA4-214ENST00000589677 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17■□□□□ 0.31
SMARCA4-214ENST00000589677 PCF11O94913 1555 aaKnown RBP17■□□□□ 0.31
SMARCA4-214ENST00000589677 NF2P35240 595 aa16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 GOLGA6L10A0A0M3HER8 536 aa16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 PAFAH1B1P43034 410 aa16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 GNG11P61952 73 aa16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 TICAM2Q86XR7 235 aa16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 NUTM1Q86Y26 1132 aa16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 CCDC43Q96MW1 224 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-214ENST00000589677 NSD3Q9BZ95 1437 aa16.98■□□□□ 0.31
SMARCA4-214ENST00000589677 HMGB1P09429 215 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-214ENST00000589677 TUBB4BP68371 445 aa16.98■□□□□ 0.31
SMARCA4-214ENST00000589677 TTC31Q49AM3 519 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms