RNA–Protein interactions for RNA: ENST00000588410.1

TPM4-208, Transcript of tropomyosin 4, humanhuman

TSL 4

Gene TPM4, Length 563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-208ENST00000588410 LINC00116Q8NCU8 138 aa26.26■■□□□ 1.79
TPM4-208ENST00000588410 NUDCQ9Y266 331 aa26.26■■□□□ 1.79
TPM4-208ENST00000588410 MTHFSDQ2M296 383 aaKnown RBP26.25■■□□□ 1.79
TPM4-208ENST00000588410 ITGB4P16144 1822 aa26.25■■□□□ 1.79
TPM4-208ENST00000588410 COL3A1P02461 1466 aaPredicted RBP26.24■■□□□ 1.79
TPM4-208ENST00000588410 PHF14O94880 888 aa26.24■■□□□ 1.79
TPM4-208ENST00000588410 ITPK1Q13572 414 aa26.24■■□□□ 1.79
TPM4-208ENST00000588410 SYT17Q9BSW7 474 aa26.24■■□□□ 1.79
TPM4-208ENST00000588410 KLHL34Q8N239 644 aa26.22■■□□□ 1.79
TPM4-208ENST00000588410 GNPATO15228 680 aa26.21■■□□□ 1.79
TPM4-208ENST00000588410 MSL1Q68DK7 614 aa26.21■■□□□ 1.79
TPM4-208ENST00000588410 C5P01031 1676 aa26.21■■□□□ 1.79
TPM4-208ENST00000588410 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.2■■□□□ 1.78
TPM4-208ENST00000588410 RNMTO43148 476 aaKnown RBP26.2■■□□□ 1.78
TPM4-208ENST00000588410 PTCD1O75127 700 aaKnown RBP26.2■■□□□ 1.78
TPM4-208ENST00000588410 SSFA2P28290 1259 aa26.2■■□□□ 1.78
TPM4-208ENST00000588410 SLC52A2Q9HAB3 445 aa26.2■■□□□ 1.78
TPM4-208ENST00000588410 LGR6Q9HBX8 967 aa26.2■■□□□ 1.78
TPM4-208ENST00000588410 GAS2L2Q8NHY3 880 aa26.19■■□□□ 1.78
TPM4-208ENST00000588410 QSER1Q2KHR3 1735 aa26.19■■□□□ 1.78
TPM4-208ENST00000588410 C4BP0C0L5 1744 aa26.18■■□□□ 1.78
TPM4-208ENST00000588410 SLC4A9Q96Q91 983 aa26.18■■□□□ 1.78
TPM4-208ENST00000588410 U2AF1L5P0DN76 240 aaPredicted RBP26.17■■□□□ 1.78
TPM4-208ENST00000588410 U2AF1Q01081 240 aaKnown RBP eCLIP26.17■■□□□ 1.78
TPM4-208ENST00000588410 AMIGO3Q86WK7 504 aa26.17■■□□□ 1.78
TPM4-208ENST00000588410 SMIM5Q71RC9 77 aa26.16■■□□□ 1.78
TPM4-208ENST00000588410 PRKAR2BP31323 418 aa26.15■■□□□ 1.78
TPM4-208ENST00000588410 RTCBQ9Y3I0 505 aaKnown RBP26.15■■□□□ 1.78
TPM4-208ENST00000588410 MAP3K5Q99683 1374 aa26.15■■□□□ 1.78
TPM4-208ENST00000588410 RC3H1Q5TC82 1133 aaKnown RBP26.14■■□□□ 1.78
TPM4-208ENST00000588410 GNAT3A8MTJ3 354 aa26.13■■□□□ 1.77
TPM4-208ENST00000588410 RSPH6AQ9H0K4 717 aa26.13■■□□□ 1.77
TPM4-208ENST00000588410 TUBGCP6Q96RT7 1819 aa26.12■■□□□ 1.77
TPM4-208ENST00000588410 TRAPPC3LQ5T215 181 aa26.12■■□□□ 1.77
TPM4-208ENST00000588410 CNTNAP4Q9C0A0 1308 aa26.12■■□□□ 1.77
TPM4-208ENST00000588410 FCHSD2O94868 740 aa26.1■■□□□ 1.77
TPM4-208ENST00000588410 TEFQ10587 303 aa26.1■■□□□ 1.77
TPM4-208ENST00000588410 DDX10Q13206 875 aaKnown RBP26.1■■□□□ 1.77
TPM4-208ENST00000588410 TAF1LQ8IZX4 1826 aa26.09■■□□□ 1.77
TPM4-208ENST00000588410 RPS6KA4O75676 772 aa26.09■■□□□ 1.77
TPM4-208ENST00000588410 ADRA2BP18089 450 aa26.09■■□□□ 1.77
TPM4-208ENST00000588410 SLC39A6Q13433 755 aa26.09■■□□□ 1.77
TPM4-208ENST00000588410 PHACTR3Q96KR7 559 aa26.09■■□□□ 1.77
TPM4-208ENST00000588410 MRC1P22897 1456 aa26.07■■□□□ 1.76
TPM4-208ENST00000588410 CRKLP46109 303 aaKnown RBP26.07■■□□□ 1.76
TPM4-208ENST00000588410 TTC5Q8N0Z6 440 aa26.07■■□□□ 1.76
TPM4-208ENST00000588410 RFC4P35249 363 aa26.06■■□□□ 1.76
TPM4-208ENST00000588410 IL17REQ8NFR9 667 aa26.06■■□□□ 1.76
TPM4-208ENST00000588410 NEFMP07197 916 aa26.05■■□□□ 1.76
TPM4-208ENST00000588410 RALBP1Q15311 655 aa26.05■■□□□ 1.76
TPM4-208ENST00000588410 GPR162Q16538 588 aa26.05■■□□□ 1.76
TPM4-208ENST00000588410 ARHGEF1Q92888 912 aaKnown RBP26.05■■□□□ 1.76
TPM4-208ENST00000588410 YY1P25490 414 aa26.04■■□□□ 1.76
TPM4-208ENST00000588410 DNAJC10Q8IXB1 793 aa26.04■■□□□ 1.76
TPM4-208ENST00000588410 PELP1Q8IZL8 1130 aaKnown RBP26.04■■□□□ 1.76
TPM4-208ENST00000588410 NLGN2Q8NFZ4 835 aa26.04■■□□□ 1.76
TPM4-208ENST00000588410 RTF1Q92541 710 aaKnown RBP26.04■■□□□ 1.76
TPM4-208ENST00000588410 CD2APQ9Y5K6 639 aa26.03■■□□□ 1.76
TPM4-208ENST00000588410 SCN11AQ9UI33 1791 aa26.02■■□□□ 1.76
TPM4-208ENST00000588410 ZEB1P37275 1124 aaPredicted RBP26.02■■□□□ 1.76
TPM4-208ENST00000588410 NLGN1Q8N2Q7 840 aa26.02■■□□□ 1.76
TPM4-208ENST00000588410 ZNF831Q5JPB2 1677 aa26.02■■□□□ 1.76
TPM4-208ENST00000588410 COL24A1Q17RW2 1714 aa26.01■■□□□ 1.75
TPM4-208ENST00000588410 VSIG10Q8N0Z9 540 aa26.01■■□□□ 1.75
TPM4-208ENST00000588410 CCDC87Q9NVE4 849 aa26.01■■□□□ 1.75
TPM4-208ENST00000588410 UBR3Q6ZT12 1888 aa26■■□□□ 1.75
TPM4-208ENST00000588410 MMP10P09238 476 aa25.99■■□□□ 1.75
TPM4-208ENST00000588410 INTS5Q6P9B9 1019 aaKnown RBP25.99■■□□□ 1.75
TPM4-208ENST00000588410 CYP19A1P11511 503 aaPredicted RBP25.98■■□□□ 1.75
TPM4-208ENST00000588410 ZNF790Q6PG37 636 aa25.98■■□□□ 1.75
TPM4-208ENST00000588410 CEMIPQ8WUJ3 1361 aa25.97■■□□□ 1.75
TPM4-208ENST00000588410 ADAMTS7Q9UKP4 1686 aa25.97■■□□□ 1.75
TPM4-208ENST00000588410 BTBD11A6QL63 1104 aa25.97■■□□□ 1.75
TPM4-208ENST00000588410 PNNQ9H307 717 aaKnown RBP25.97■■□□□ 1.75
TPM4-208ENST00000588410 HTATSF1O43719 755 aaKnown RBP25.96■■□□□ 1.75
TPM4-208ENST00000588410 GYS1P13807 737 aa25.96■■□□□ 1.75
TPM4-208ENST00000588410 KCPQ6ZWJ8 1503 aa25.95■■□□□ 1.74
TPM4-208ENST00000588410 STARD3NLO95772 234 aa25.95■■□□□ 1.74
TPM4-208ENST00000588410 MCM10Q7L590 875 aa25.95■■□□□ 1.74
TPM4-208ENST00000588410 ZNF496Q96IT1 587 aaPredicted RBP25.95■■□□□ 1.74
TPM4-208ENST00000588410 FMNL2Q96PY5 1086 aa25.94■■□□□ 1.74
TPM4-208ENST00000588410 ZPR1O75312 459 aa25.93■■□□□ 1.74
TPM4-208ENST00000588410 TEX13AQ9BXU3 409 aaPredicted RBP25.93■■□□□ 1.74
TPM4-208ENST00000588410 SRP68Q9UHB9 627 aaKnown RBP25.93■■□□□ 1.74
TPM4-208ENST00000588410 PARP3Q9Y6F1 533 aa25.93■■□□□ 1.74
TPM4-208ENST00000588410 COL5A3P25940 1745 aaPredicted RBP25.93■■□□□ 1.74
TPM4-208ENST00000588410 SOS1Q07889 1333 aaPredicted RBP25.92■■□□□ 1.74
TPM4-208ENST00000588410 MYBBP1AQ9BQG0 1328 aaKnown RBP25.92■■□□□ 1.74
TPM4-208ENST00000588410 USP42Q9H9J4 1324 aaKnown RBP25.92■■□□□ 1.74
TPM4-208ENST00000588410 MAPK8IP3Q9UPT6 1336 aa25.92■■□□□ 1.74
TPM4-208ENST00000588410 ZBTB1Q9Y2K1 713 aa25.92■■□□□ 1.74
TPM4-208ENST00000588410 HEG1Q9ULI3 1381 aa25.92■■□□□ 1.74
TPM4-208ENST00000588410 CANXP27824 592 aaKnown RBP25.91■■□□□ 1.74
TPM4-208ENST00000588410 DCTN1Q14203 1278 aa25.91■■□□□ 1.74
TPM4-208ENST00000588410 TJP1Q07157 1748 aa25.91■■□□□ 1.74
TPM4-208ENST00000588410 GRIN3BO60391 1043 aa25.9■■□□□ 1.74
TPM4-208ENST00000588410 CICQ96RK0 1608 aaPredicted RBP25.89■■□□□ 1.74
TPM4-208ENST00000588410 PLEKHF1Q96S99 279 aa25.89■■□□□ 1.74
TPM4-208ENST00000588410 KCNQ3O43525 872 aa25.88■■□□□ 1.73
TPM4-208ENST00000588410 FKBP8Q14318 412 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms