RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ADGRB2O60241 1585 aa7.3□□□□□ -1.24
LIG3-210ENST00000588109 ADGRL3Q9HAR2 1447 aa7.3□□□□□ -1.24
LIG3-210ENST00000588109 DDX11L8A8MPP1 907 aa7.3□□□□□ -1.24
LIG3-210ENST00000588109 PHOX2BQ99453 314 aa7.3□□□□□ -1.24
LIG3-210ENST00000588109 TRIM66O15016 1216 aa7.29□□□□□ -1.24
LIG3-210ENST00000588109 PRR14Q9BWN1 585 aa7.29□□□□□ -1.24
LIG3-210ENST00000588109 MSH6P52701 1360 aa7.29□□□□□ -1.24
LIG3-210ENST00000588109 ATAD2Q6PL18 1390 aa7.29□□□□□ -1.24
LIG3-210ENST00000588109 CDC42BPGQ6DT37 1551 aa7.29□□□□□ -1.24
LIG3-210ENST00000588109 NCOA3Q9Y6Q9 1424 aa7.28□□□□□ -1.24
LIG3-210ENST00000588109 LRRC7Q96NW7 1537 aa7.28□□□□□ -1.24
LIG3-210ENST00000588109 ATF3P18847 181 aa7.28□□□□□ -1.24
LIG3-210ENST00000588109 KMT5BQ4FZB7 885 aa7.28□□□□□ -1.24
LIG3-210ENST00000588109 NUDT16Q96DE0 195 aaKnown RBP7.28□□□□□ -1.24
LIG3-210ENST00000588109 PUS7Q96PZ0 661 aaKnown RBP7.28□□□□□ -1.24
LIG3-210ENST00000588109 C19orf44Q9H6X5 657 aa7.28□□□□□ -1.24
LIG3-210ENST00000588109 GPCPD1Q9NPB8 672 aa7.28□□□□□ -1.24
LIG3-210ENST00000588109 FMN2Q9NZ56 1722 aa7.27□□□□□ -1.25
LIG3-210ENST00000588109 DIEXFQ68CQ4 756 aaKnown RBP7.27□□□□□ -1.25
LIG3-210ENST00000588109 NINLQ9Y2I6 1382 aa7.27□□□□□ -1.25
LIG3-210ENST00000588109 PPIP5K1Q6PFW1 1433 aa7.27□□□□□ -1.25
LIG3-210ENST00000588109 MYOM1P52179 1685 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 ATP7BP35670 1465 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 AMHR2Q16671 573 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 SLC12A5Q9H2X9 1139 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 PANK3Q9H999 370 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 TERF2IPQ9NYB0 399 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 CABP1Q9NZU7 370 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 ITSN1Q15811 1721 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 DCCP43146 1447 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 ANKARQ7Z5J8 1434 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 PRR36Q9H6K5 1346 aa7.26□□□□□ -1.25
LIG3-210ENST00000588109 XIRP1Q702N8 1843 aaKnown RBP7.25□□□□□ -1.25
LIG3-210ENST00000588109 CFHP08603 1231 aa7.25□□□□□ -1.25
LIG3-210ENST00000588109 HDGFL2Q7Z4V5 671 aaPredicted RBP7.25□□□□□ -1.25
LIG3-210ENST00000588109 LTBP4Q8N2S1 1624 aa7.25□□□□□ -1.25
LIG3-210ENST00000588109 USP32Q8NFA0 1604 aa7.25□□□□□ -1.25
LIG3-210ENST00000588109 ANKRD36BQ8N2N9 1353 aa7.24□□□□□ -1.25
LIG3-210ENST00000588109 RGPD8O14715 1765 aaPredicted RBP7.24□□□□□ -1.25
LIG3-210ENST00000588109 SSTR3P32745 418 aaPredicted RBP7.24□□□□□ -1.25
LIG3-210ENST00000588109 PDE4DQ08499 809 aa7.24□□□□□ -1.25
LIG3-210ENST00000588109 CNGB1Q14028 1251 aaPredicted RBP7.24□□□□□ -1.25
LIG3-210ENST00000588109 ESCO1Q5FWF5 840 aa7.24□□□□□ -1.25
LIG3-210ENST00000588109 NGDNQ8NEJ9 315 aaKnown RBP7.24□□□□□ -1.25
LIG3-210ENST00000588109 PMFBP1Q8TBY8 1022 aa7.24□□□□□ -1.25
LIG3-210ENST00000588109 KNSTRNQ9Y448 316 aa7.24□□□□□ -1.25
LIG3-210ENST00000588109 TOPAZ1Q8N9V7 1692 aa7.24□□□□□ -1.25
LIG3-210ENST00000588109 A0A1W2PP64 1363 aa7.23□□□□□ -1.25
LIG3-210ENST00000588109 SLC10A3P09131 477 aa7.23□□□□□ -1.25
LIG3-210ENST00000588109 NSD3Q9BZ95 1437 aa7.23□□□□□ -1.25
LIG3-210ENST00000588109 ACEP12821 1306 aa7.23□□□□□ -1.25
LIG3-210ENST00000588109 C1orf167Q5SNV9 1468 aa7.23□□□□□ -1.25
LIG3-210ENST00000588109 KTN1Q86UP2 1357 aaKnown RBP7.22□□□□□ -1.25
LIG3-210ENST00000588109 MST1RQ04912 1400 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 PLEKHG3A1L390 1219 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 ANP32CO43423 234 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 APLP1P51693 650 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 GRIPAP1Q4V328 841 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 GIGYF2Q6Y7W6 1299 aaKnown RBP7.22□□□□□ -1.25
LIG3-210ENST00000588109 NUTM1Q86Y26 1132 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 ORAI2Q96SN7 254 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 FAM217BQ9NTX9 383 aaPredicted RBP7.22□□□□□ -1.25
LIG3-210ENST00000588109 PCDHB3Q9Y5E6 796 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 KIF1AQ12756 1690 aa7.22□□□□□ -1.25
LIG3-210ENST00000588109 GCGRP47871 477 aa7.21□□□□□ -1.26
LIG3-210ENST00000588109 PSME1Q06323 249 aa7.21□□□□□ -1.26
LIG3-210ENST00000588109 CARD14Q9BXL6 1004 aa7.21□□□□□ -1.26
LIG3-210ENST00000588109 SLAIN2Q9P270 581 aa7.21□□□□□ -1.26
LIG3-210ENST00000588109 CD163L1Q9NR16 1453 aa7.21□□□□□ -1.26
LIG3-210ENST00000588109 MON2Q7Z3U7 1717 aa7.21□□□□□ -1.26
LIG3-210ENST00000588109 AKAP12Q02952 1782 aa7.2□□□□□ -1.26
LIG3-210ENST00000588109 CPSF1Q10570 1443 aaKnown RBP7.2□□□□□ -1.26
LIG3-210ENST00000588109 ACTN4O43707 911 aaKnown RBP7.2□□□□□ -1.26
LIG3-210ENST00000588109 CD46P15529 392 aa7.2□□□□□ -1.26
LIG3-210ENST00000588109 CC2D1BQ5T0F9 858 aaKnown RBP7.2□□□□□ -1.26
LIG3-210ENST00000588109 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIG3-210ENST00000588109 PARP9Q8IXQ6 854 aa7.2□□□□□ -1.26
LIG3-210ENST00000588109 TMUB1Q9BVT8 246 aa7.2□□□□□ -1.26
LIG3-210ENST00000588109 REPIN1Q9BWE0 567 aaKnown RBP7.2□□□□□ -1.26
LIG3-210ENST00000588109 CGNL1Q0VF96 1302 aa7.2□□□□□ -1.26
LIG3-210ENST00000588109 POLR3AO14802 1390 aaPredicted RBP7.2□□□□□ -1.26
LIG3-210ENST00000588109 USP6P35125 1406 aa7.19□□□□□ -1.26
LIG3-210ENST00000588109 EDC4Q6P2E9 1401 aaKnown RBP7.19□□□□□ -1.26
LIG3-210ENST00000588109 PER1O15534 1290 aaPredicted RBP7.19□□□□□ -1.26
LIG3-210ENST00000588109 FOXO3O43524 673 aa7.19□□□□□ -1.26
LIG3-210ENST00000588109 TOM1O60784 492 aa7.19□□□□□ -1.26
LIG3-210ENST00000588109 KCNC4Q03721 635 aa7.19□□□□□ -1.26
LIG3-210ENST00000588109 IQSEC2Q5JU85 1478 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 KIF20BQ96Q89 1820 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 UBAP1LF5GYI3 381 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 KDM4AO75164 1064 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 NR1I2O75469 434 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 ATP6V1AP38606 617 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 COPS2P61201 443 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 PIP4K2BP78356 416 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 XPCQ01831 940 aaPredicted RBP7.18□□□□□ -1.26
LIG3-210ENST00000588109 NEUROD2Q15784 382 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 BRINP3Q76B58 766 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 KRT28Q7Z3Y7 464 aa7.18□□□□□ -1.26
LIG3-210ENST00000588109 MORC1Q86VD1 984 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms