RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GCC1Q96CN9 775 aa14.19□□□□□ -0.14
LIG3-204ENST00000585740 NGLY1Q96IV0 654 aa14.19□□□□□ -0.14
LIG3-204ENST00000585740 STK31Q9BXU1 1019 aa14.19□□□□□ -0.14
LIG3-204ENST00000585740 CEMIPQ8WUJ3 1361 aa14.19□□□□□ -0.14
LIG3-204ENST00000585740 KDM3BQ7LBC6 1761 aa14.19□□□□□ -0.14
LIG3-204ENST00000585740 ADAMTS2O95450 1211 aa14.18□□□□□ -0.14
LIG3-204ENST00000585740 CCDC30Q5VVM6 783 aa14.18□□□□□ -0.14
LIG3-204ENST00000585740 USHBP1Q8N6Y0 703 aa14.18□□□□□ -0.14
LIG3-204ENST00000585740 IL17REQ8NFR9 667 aa14.18□□□□□ -0.14
LIG3-204ENST00000585740 DDX17Q92841 729 aaKnown RBP14.18□□□□□ -0.14
LIG3-204ENST00000585740 ANP32EQ9BTT0 268 aa14.18□□□□□ -0.14
LIG3-204ENST00000585740 NOP58Q9Y2X3 529 aaKnown RBP14.18□□□□□ -0.14
LIG3-204ENST00000585740 N4BP2Q86UW6 1770 aaPredicted RBP14.17□□□□□ -0.14
LIG3-204ENST00000585740 ZBTB47Q9UFB7 747 aaPredicted RBP14.17□□□□□ -0.14
LIG3-204ENST00000585740 CRYBG1Q9Y4K1 1723 aa14.17□□□□□ -0.14
LIG3-204ENST00000585740 PXDNQ92626 1479 aa14.17□□□□□ -0.14
LIG3-204ENST00000585740 COL18A1P39060 1754 aa14.17□□□□□ -0.14
LIG3-204ENST00000585740 HOXB7P09629 217 aa14.16□□□□□ -0.14
LIG3-204ENST00000585740 KRT24Q2M2I5 525 aa14.16□□□□□ -0.14
LIG3-204ENST00000585740 C1orf141Q5JVX7 400 aa14.16□□□□□ -0.14
LIG3-204ENST00000585740 ZNF530Q6P9A1 599 aaPredicted RBP14.16□□□□□ -0.14
LIG3-204ENST00000585740 NPM2Q86SE8 214 aaKnown RBP14.16□□□□□ -0.14
LIG3-204ENST00000585740 SLC4A2P04920 1241 aa14.15□□□□□ -0.14
LIG3-204ENST00000585740 CCT4P50991 539 aaKnown RBP14.15□□□□□ -0.14
LIG3-204ENST00000585740 MIS18AQ9NYP9 233 aa14.15□□□□□ -0.14
LIG3-204ENST00000585740 SPATA31A3Q5VYP0 1347 aa14.15□□□□□ -0.15
LIG3-204ENST00000585740 ADAMTS7Q9UKP4 1686 aa14.14□□□□□ -0.15
LIG3-204ENST00000585740 NUCB1Q02818 461 aa14.14□□□□□ -0.15
LIG3-204ENST00000585740 USP21Q9UK80 565 aa14.14□□□□□ -0.15
LIG3-204ENST00000585740 NHSL1Q5SYE7 1610 aa14.14□□□□□ -0.15
LIG3-204ENST00000585740 ERBB3P21860 1342 aa14.14□□□□□ -0.15
LIG3-204ENST00000585740 PXDNLA1KZ92 1463 aa14.13□□□□□ -0.15
LIG3-204ENST00000585740 CPDO75976 1380 aa14.13□□□□□ -0.15
LIG3-204ENST00000585740 TEFQ10587 303 aa14.13□□□□□ -0.15
LIG3-204ENST00000585740 RPAP2Q8IXW5 612 aaPredicted RBP14.13□□□□□ -0.15
LIG3-204ENST00000585740 SIPA1L3O60292 1781 aaPredicted RBP14.13□□□□□ -0.15
LIG3-204ENST00000585740 MYT1Q01538 1121 aa14.12□□□□□ -0.15
LIG3-204ENST00000585740 UPF2Q9HAU5 1272 aaKnown RBP14.12□□□□□ -0.15
LIG3-204ENST00000585740 TRPC5Q9UL62 973 aaPredicted RBP14.12□□□□□ -0.15
LIG3-204ENST00000585740 RNMTO43148 476 aaKnown RBP14.11□□□□□ -0.15
LIG3-204ENST00000585740 ZC3H6P61129 1189 aaKnown RBP14.11□□□□□ -0.15
LIG3-204ENST00000585740 CHD1LQ86WJ1 897 aa14.11□□□□□ -0.15
LIG3-204ENST00000585740 ANKRD44Q8N8A2 993 aa14.11□□□□□ -0.15
LIG3-204ENST00000585740 RAPGEF4Q8WZA2 1011 aa14.11□□□□□ -0.15
LIG3-204ENST00000585740 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.11□□□□□ -0.154e-6■□□□□ 11.2
LIG3-204ENST00000585740 SCN11AQ9UI33 1791 aa14.1□□□□□ -0.15
LIG3-204ENST00000585740 TATP17735 454 aaPredicted RBP14.1□□□□□ -0.15
LIG3-204ENST00000585740 FLIIQ13045 1269 aa14.1□□□□□ -0.15
LIG3-204ENST00000585740 AXIN2Q9Y2T1 843 aa14.1□□□□□ -0.15
LIG3-204ENST00000585740 EIF5BO60841 1220 aaKnown RBP14.09□□□□□ -0.15
LIG3-204ENST00000585740 HMMRO75330 724 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 EIF4A1P60842 406 aaKnown RBP14.09□□□□□ -0.15
LIG3-204ENST00000585740 HDGFL1Q5TGJ6 251 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 CCDC125Q86Z20 511 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 C1orf115Q9H7X2 142 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 LGR6Q9HBX8 967 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 SPG7Q9UQ90 795 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 EP400Q96L91 3159 aa14.09□□□□□ -0.15
LIG3-204ENST00000585740 PKD1L3Q7Z443 1732 aa14.08□□□□□ -0.16
LIG3-204ENST00000585740 BTBD11A6QL63 1104 aa14.08□□□□□ -0.16
LIG3-204ENST00000585740 GNAI3P08754 354 aa14.08□□□□□ -0.16
LIG3-204ENST00000585740 G2E3Q7L622 706 aa14.08□□□□□ -0.16
LIG3-204ENST00000585740 FNBP4Q8N3X1 1017 aaPredicted RBP14.08□□□□□ -0.16
LIG3-204ENST00000585740 DCTPP1Q9H773 170 aa14.08□□□□□ -0.16
LIG3-204ENST00000585740 SOS2Q07890 1332 aaPredicted RBP14.08□□□□□ -0.16
LIG3-204ENST00000585740 ATP10DQ9P241 1426 aa14.07□□□□□ -0.16
LIG3-204ENST00000585740 PLEKHG5O94827 1062 aa14.07□□□□□ -0.16
LIG3-204ENST00000585740 FKBP5Q13451 457 aaPredicted RBP14.07□□□□□ -0.16
LIG3-204ENST00000585740 ANKRD45Q5TZF3 282 aa14.07□□□□□ -0.16
LIG3-204ENST00000585740 SIRT2Q8IXJ6 389 aa14.07□□□□□ -0.16
LIG3-204ENST00000585740 NLRP2Q9NX02 1062 aa14.07□□□□□ -0.16
LIG3-204ENST00000585740 HSP90AB1P08238 724 aaKnown RBP14.06□□□□□ -0.16
LIG3-204ENST00000585740 CSB-PGBD3P0DP91 1061 aa14.06□□□□□ -0.16
LIG3-204ENST00000585740 CEP85Q6P2H3 762 aa14.06□□□□□ -0.16
LIG3-204ENST00000585740 MPRIPQ6WCQ1 1025 aa14.06□□□□□ -0.16
LIG3-204ENST00000585740 LNPKQ9C0E8 428 aa14.06□□□□□ -0.16
LIG3-204ENST00000585740 DAXXQ9UER7 740 aaPredicted RBP14.06□□□□□ -0.16
LIG3-204ENST00000585740 PARP4Q9UKK3 1724 aaKnown RBP14.06□□□□□ -0.16
LIG3-204ENST00000585740 ATRNO75882 1429 aa14.06□□□□□ -0.16
LIG3-204ENST00000585740 ABCA3Q99758 1704 aa14.05□□□□□ -0.16
LIG3-204ENST00000585740 GNAI2P04899 355 aa14.05□□□□□ -0.16
LIG3-204ENST00000585740 SLC4A10Q6U841 1118 aa14.05□□□□□ -0.16
LIG3-204ENST00000585740 BMP2KLQ5H9B9 411 aa14.04□□□□□ -0.16
LIG3-204ENST00000585740 IFNL2Q8IZJ0 200 aa14.04□□□□□ -0.16
LIG3-204ENST00000585740 MEIS3Q99687 375 aa14.04□□□□□ -0.16
LIG3-204ENST00000585740 HEG1Q9ULI3 1381 aa14.03□□□□□ -0.16
LIG3-204ENST00000585740 MRC1P22897 1456 aa14.02□□□□□ -0.16
LIG3-204ENST00000585740 F6X3S4 739 aa14.02□□□□□ -0.17
LIG3-204ENST00000585740 PHKG2P15735 406 aa14.02□□□□□ -0.17
LIG3-204ENST00000585740 BECN1Q14457 450 aa14.02□□□□□ -0.17
LIG3-204ENST00000585740 DBF4Q9UBU7 674 aaPredicted RBP14.02□□□□□ -0.17
LIG3-204ENST00000585740 MEGF6O75095 1541 aa14.01□□□□□ -0.17
LIG3-204ENST00000585740 EIF2S2P20042 333 aaKnown RBP14.01□□□□□ -0.17
LIG3-204ENST00000585740 CABLES1Q8TDN4 633 aa14.01□□□□□ -0.17
LIG3-204ENST00000585740 NECTIN2Q92692 538 aa14.01□□□□□ -0.17
LIG3-204ENST00000585740 TBC1D32Q96NH3 1257 aa14.01□□□□□ -0.17
LIG3-204ENST00000585740 HDAC5Q9UQL6 1122 aa14.01□□□□□ -0.17
LIG3-204ENST00000585740 BCL9LQ86UU0 1499 aa14□□□□□ -0.17
LIG3-204ENST00000585740 WDR17Q8IZU2 1322 aa14□□□□□ -0.17
LIG3-204ENST00000585740 GIGYF1O75420 1035 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms