RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 AMPHP49418 695 aa17.4■□□□□ 0.38
CDK5RAP3-237ENST00000585163 EXOC6BQ9Y2D4 811 aa17.4■□□□□ 0.38
CDK5RAP3-237ENST00000585163 ERBB4Q15303 1308 aa17.4■□□□□ 0.38
CDK5RAP3-237ENST00000585163 TUBGCP6Q96RT7 1819 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 FLIIQ13045 1269 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 KIF13AQ9H1H9 1805 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 GNAI3P08754 354 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 ZNF445P59923 1031 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 CCDC30Q5VVM6 783 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 LRRCC1Q9C099 1032 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 AMOTL2Q9Y2J4 779 aa17.39■□□□□ 0.37
CDK5RAP3-237ENST00000585163 FAM208AQ9UK61 1670 aaKnown RBP17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 NASPP49321 788 aaPredicted RBP17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 XRN1Q8IZH2 1706 aaKnown RBP17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 PIK3C2AO00443 1686 aa17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 CCDC173Q0VFZ6 552 aa17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 NGDNQ8NEJ9 315 aaKnown RBP17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 ZDHHC9Q9Y397 364 aa17.38■□□□□ 0.37
CDK5RAP3-237ENST00000585163 ATP8B2P98198 1209 aa17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 FKBP5Q13451 457 aaPredicted RBP17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 PPP1R9BQ96SB3 815 aa17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 SOS1Q07889 1333 aaPredicted RBP17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 MX1P20591 662 aa17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 ESYT1Q9BSJ8 1104 aa17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 EID1Q9Y6B2 187 aa17.37■□□□□ 0.37
CDK5RAP3-237ENST00000585163 RGPD8O14715 1765 aaPredicted RBP17.36■□□□□ 0.37
CDK5RAP3-237ENST00000585163 CACNA1FO60840 1977 aa17.36■□□□□ 0.37
CDK5RAP3-237ENST00000585163 DIP2AQ14689 1571 aa17.36■□□□□ 0.37
CDK5RAP3-237ENST00000585163 PNMA6EA0A0J9YXQ4 647 aa17.36■□□□□ 0.37
CDK5RAP3-237ENST00000585163 GNAT3A8MTJ3 354 aa17.36■□□□□ 0.37
CDK5RAP3-237ENST00000585163 NEK4P51957 841 aa17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 ZSCAN23Q3MJ62 389 aa17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 TSHZ3Q63HK5 1081 aa17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 CAVIN1Q6NZI2 390 aaKnown RBP17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 TBX22Q9Y458 520 aa17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 MCM2P49736 904 aa17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 STAP2Q9UGK3 403 aa17.35■□□□□ 0.37
CDK5RAP3-237ENST00000585163 N4BP2Q86UW6 1770 aaPredicted RBP17.34■□□□□ 0.37
CDK5RAP3-237ENST00000585163 TMX3Q96JJ7 454 aa17.34■□□□□ 0.37
CDK5RAP3-237ENST00000585163 NAP1L5Q96NT1 182 aaPredicted RBP17.34■□□□□ 0.37
CDK5RAP3-237ENST00000585163 BABAM1Q9NWV8 329 aa17.34■□□□□ 0.37
CDK5RAP3-237ENST00000585163 SLIT1O75093 1534 aa17.33■□□□□ 0.37
CDK5RAP3-237ENST00000585163 PXDNLA1KZ92 1463 aa17.33■□□□□ 0.37
CDK5RAP3-237ENST00000585163 NWD1Q149M9 1564 aa17.33■□□□□ 0.37
CDK5RAP3-237ENST00000585163 CHMLP26374 656 aa17.33■□□□□ 0.36
CDK5RAP3-237ENST00000585163 ANAPC15P60006 121 aa17.33■□□□□ 0.36
CDK5RAP3-237ENST00000585163 ANP32BQ92688 251 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-237ENST00000585163 SRCIN1Q9C0H9 1055 aa17.33■□□□□ 0.36
CDK5RAP3-237ENST00000585163 ARHGAP23Q9P227 1491 aa17.33■□□□□ 0.36
CDK5RAP3-237ENST00000585163 PRPF40AO75400 957 aaKnown RBP17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 NCLP19338 710 aaKnown RBP17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 HOXC9P31274 260 aa17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 NLRP6P59044 892 aa17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 IL17REQ8NFR9 667 aa17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 MCCP23508 829 aa17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 LRRFIP2Q9Y608 721 aaKnown RBP17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 MAP3K5Q99683 1374 aa17.32■□□□□ 0.36
CDK5RAP3-237ENST00000585163 GPT2Q8TD30 523 aa17.31■□□□□ 0.36
CDK5RAP3-237ENST00000585163 NECTIN2Q92692 538 aa17.31■□□□□ 0.36
CDK5RAP3-237ENST00000585163 IL17RAQ96F46 866 aa17.31■□□□□ 0.36
CDK5RAP3-237ENST00000585163 USP44Q9H0E7 712 aa17.31■□□□□ 0.36
CDK5RAP3-237ENST00000585163 CUL4AQ13619 759 aa17.31■□□□□ 0.36
CDK5RAP3-237ENST00000585163 TAF7Q15545 349 aaPredicted RBP17.31■□□□□ 0.36
CDK5RAP3-237ENST00000585163 PALD1Q9ULE6 856 aa17.3■□□□□ 0.36
CDK5RAP3-237ENST00000585163 AOX1Q06278 1338 aa17.3■□□□□ 0.36
CDK5RAP3-237ENST00000585163 TRIM6-TRIM34B2RNG4 842 aa17.3■□□□□ 0.36
CDK5RAP3-237ENST00000585163 CEBPAP49715 358 aaPredicted RBP17.3■□□□□ 0.36
CDK5RAP3-237ENST00000585163 RILPL2Q969X0 211 aa17.3■□□□□ 0.36
CDK5RAP3-237ENST00000585163 MARF1Q9Y4F3 1742 aaKnown RBP17.3■□□□□ 0.36
CDK5RAP3-237ENST00000585163 ANO2Q9NQ90 1003 aa17.29■□□□□ 0.36
CDK5RAP3-237ENST00000585163 ANKARQ7Z5J8 1434 aa17.29■□□□□ 0.36
CDK5RAP3-237ENST00000585163 INTS4Q96HW7 963 aaKnown RBP17.29■□□□□ 0.36
CDK5RAP3-237ENST00000585163 USP54Q70EL1 1684 aa17.28■□□□□ 0.36
CDK5RAP3-237ENST00000585163 SSH3Q8TE77 659 aa17.28■□□□□ 0.36
CDK5RAP3-237ENST00000585163 EPB41L2O43491 1005 aaKnown RBP17.28■□□□□ 0.36
CDK5RAP3-237ENST00000585163 BRD1O95696 1058 aa17.28■□□□□ 0.36
CDK5RAP3-237ENST00000585163 UBTFL1P0CB47 393 aaPredicted RBP17.28■□□□□ 0.36
CDK5RAP3-237ENST00000585163 UNC5CLQ8IV45 518 aa17.28■□□□□ 0.36
CDK5RAP3-237ENST00000585163 PRIM1P49642 420 aaKnown RBP17.27■□□□□ 0.36
CDK5RAP3-237ENST00000585163 RBSNQ9H1K0 784 aa17.27■□□□□ 0.36
CDK5RAP3-237ENST00000585163 ZSCAN30Q86W11 494 aa17.27■□□□□ 0.36
CDK5RAP3-237ENST00000585163 CHAMP1Q96JM3 812 aa17.26■□□□□ 0.35
CDK5RAP3-237ENST00000585163 HDGFL1Q5TGJ6 251 aa17.26■□□□□ 0.35
CDK5RAP3-237ENST00000585163 RBM27Q9P2N5 1060 aaKnown RBP17.26■□□□□ 0.35
CDK5RAP3-237ENST00000585163 RAB11FIP3O75154 756 aa17.25■□□□□ 0.35
CDK5RAP3-237ENST00000585163 NUTM2GQ5VZR2 741 aa17.25■□□□□ 0.35
CDK5RAP3-237ENST00000585163 TMEM63CQ9P1W3 806 aa17.25■□□□□ 0.35
CDK5RAP3-237ENST00000585163 PHAXQ9H814 394 aaKnown RBP17.25■□□□□ 0.35
CDK5RAP3-237ENST00000585163 MBD3O95983 291 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 POLA2Q14181 598 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 HS1BP3Q53T59 392 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 ABTB2Q8N961 1025 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 PDLIM2Q96JY6 352 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 IL1RAPL2Q9NP60 686 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 CEMIPQ8WUJ3 1361 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 LRSAM1Q6UWE0 723 aa17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 NSFL1CQ9UNZ2 370 aaKnown RBP17.24■□□□□ 0.35
CDK5RAP3-237ENST00000585163 HSPA4P34932 840 aa17.23■□□□□ 0.35
CDK5RAP3-237ENST00000585163 FOXD4L5Q5VV16 416 aaPredicted RBP17.23■□□□□ 0.35
CDK5RAP3-237ENST00000585163 PPP1R42Q7Z4L9 355 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms