RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 C6orf229H3BNL8 230 aa8.61□□□□□ -1.03
PTPRM-213ENST00000580949 MTMR2Q13614 643 aa8.61□□□□□ -1.03
PTPRM-213ENST00000580949 MSS51Q4VC12 460 aa8.61□□□□□ -1.03
PTPRM-213ENST00000580949 RETREG3Q86VR2 466 aa8.61□□□□□ -1.03
PTPRM-213ENST00000580949 USB1Q9BQ65 265 aaKnown RBP8.61□□□□□ -1.03
PTPRM-213ENST00000580949 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
PTPRM-213ENST00000580949 ANP32CO43423 234 aa8.6□□□□□ -1.03
PTPRM-213ENST00000580949 FAM160A2Q8N612 972 aaPredicted RBP8.6□□□□□ -1.03
PTPRM-213ENST00000580949 SYMPKQ92797 1274 aaKnown RBP8.6□□□□□ -1.03
PTPRM-213ENST00000580949 PCMTD1Q96MG8 357 aaPredicted RBP8.6□□□□□ -1.03
PTPRM-213ENST00000580949 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.6□□□□□ -1.03
PTPRM-213ENST00000580949 PPLO60437 1756 aa8.6□□□□□ -1.03
PTPRM-213ENST00000580949 ADGRB1O14514 1584 aa8.6□□□□□ -1.03
PTPRM-213ENST00000580949 A0A0G2JS52 829 aa8.59□□□□□ -1.03
PTPRM-213ENST00000580949 LILRB3O75022 631 aa8.59□□□□□ -1.03
PTPRM-213ENST00000580949 PROCA1Q8NCQ7 364 aaPredicted RBP8.59□□□□□ -1.03
PTPRM-213ENST00000580949 SLC6A16Q9GZN6 736 aa8.59□□□□□ -1.03
PTPRM-213ENST00000580949 TRAK1Q9UPV9 953 aa8.59□□□□□ -1.03
PTPRM-213ENST00000580949 RIMS2Q9UQ26 1411 aa8.59□□□□□ -1.03
PTPRM-213ENST00000580949 KIAA1210Q9ULL0 1709 aa8.59□□□□□ -1.03
PTPRM-213ENST00000580949 CCER2I3L3R5 266 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 GGCXP38435 758 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 TMF1P82094 1093 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 QPCTQ16769 361 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 CSPP1Q1MSJ5 1256 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 GTF3C3Q9Y5Q9 886 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 IQGAP1P46940 1657 aa8.58□□□□□ -1.04
PTPRM-213ENST00000580949 SETBP1Q9Y6X0 1596 aa8.57□□□□□ -1.04
PTPRM-213ENST00000580949 CABLES1Q8TDN4 633 aa8.57□□□□□ -1.04
PTPRM-213ENST00000580949 YTHDC1Q96MU7 727 aaKnown RBP8.57□□□□□ -1.04
PTPRM-213ENST00000580949 PRKRIP1Q9H875 184 aaPredicted RBP8.57□□□□□ -1.04
PTPRM-213ENST00000580949 STK26Q9P289 416 aa8.57□□□□□ -1.04
PTPRM-213ENST00000580949 NUTM2BA6NNL0 878 aaPredicted RBP8.56□□□□□ -1.04
PTPRM-213ENST00000580949 NUTM2EB1AL46 878 aaPredicted RBP8.56□□□□□ -1.04
PTPRM-213ENST00000580949 PER1O15534 1290 aaPredicted RBP8.56□□□□□ -1.04
PTPRM-213ENST00000580949 S1PR4O95977 384 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 MMP16P51512 607 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 TMEM132AQ24JP5 1023 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 CCDC184Q52MB2 194 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 PPP2R2DQ66LE6 453 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 PPP1R18Q6NYC8 613 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 NUTM2AQ8IVF1 878 aaPredicted RBP8.56□□□□□ -1.04
PTPRM-213ENST00000580949 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.56□□□□□ -1.04
PTPRM-213ENST00000580949 EIF3AQ14152 1382 aaKnown RBP8.56□□□□□ -1.04
PTPRM-213ENST00000580949 TMEM2Q9UHN6 1383 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 MYO5BQ9ULV0 1848 aa8.56□□□□□ -1.04
PTPRM-213ENST00000580949 CENPJQ9HC77 1338 aaPredicted RBP8.55□□□□□ -1.04
PTPRM-213ENST00000580949 ASXL1Q8IXJ9 1541 aa8.55□□□□□ -1.04
PTPRM-213ENST00000580949 LTKP29376 864 aa8.55□□□□□ -1.04
PTPRM-213ENST00000580949 ERICH6Q7L0X2 663 aa8.55□□□□□ -1.04
PTPRM-213ENST00000580949 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.55□□□□□ -1.04
PTPRM-213ENST00000580949 PRR7Q8TB68 274 aa8.55□□□□□ -1.04
PTPRM-213ENST00000580949 PANK3Q9H999 370 aa8.55□□□□□ -1.04
PTPRM-213ENST00000580949 PTPRMP28827 1452 aa8.55□□□□□ -1.04
PTPRM-213ENST00000580949 NLRP1Q9C000 1473 aa8.54□□□□□ -1.04
PTPRM-213ENST00000580949 DXOO77932 396 aaKnown RBP8.54□□□□□ -1.04
PTPRM-213ENST00000580949 JUNDP17535 347 aa8.54□□□□□ -1.04
PTPRM-213ENST00000580949 RTL5Q5HYW3 569 aaPredicted RBP8.54□□□□□ -1.04
PTPRM-213ENST00000580949 DESI1Q6ICB0 168 aa8.54□□□□□ -1.04
PTPRM-213ENST00000580949 PRDM9Q9NQV7 894 aa8.54□□□□□ -1.04
PTPRM-213ENST00000580949 POLR1AO95602 1720 aaPredicted RBP8.54□□□□□ -1.04
PTPRM-213ENST00000580949 ALKQ9UM73 1620 aa8.54□□□□□ -1.04
PTPRM-213ENST00000580949 SBNO2Q9Y2G9 1366 aa8.53□□□□□ -1.04
PTPRM-213ENST00000580949 CFAP99D6REC4 459 aa8.53□□□□□ -1.04
PTPRM-213ENST00000580949 RNF223E7ERA6 249 aa8.53□□□□□ -1.04
PTPRM-213ENST00000580949 CNGB1Q14028 1251 aaPredicted RBP8.53□□□□□ -1.04
PTPRM-213ENST00000580949 CDCA8Q53HL2 280 aa8.53□□□□□ -1.04
PTPRM-213ENST00000580949 TXNDC2Q86VQ3 553 aa8.53□□□□□ -1.04
PTPRM-213ENST00000580949 YTHDC2Q9H6S0 1430 aaKnown RBP8.53□□□□□ -1.04
PTPRM-213ENST00000580949 C3P01024 1663 aa8.53□□□□□ -1.04
PTPRM-213ENST00000580949 METP08581 1390 aa8.52□□□□□ -1.05
PTPRM-213ENST00000580949 SAFB2Q14151 953 aaKnown RBP eCLIP8.52□□□□□ -1.05
PTPRM-213ENST00000580949 ANKLE1Q8NAG6 615 aa8.52□□□□□ -1.05
PTPRM-213ENST00000580949 PRAM1Q96QH2 718 aa8.52□□□□□ -1.05
PTPRM-213ENST00000580949 LRPPRCP42704 1394 aaKnown RBP8.51□□□□□ -1.05
PTPRM-213ENST00000580949 FER1L4A9Z1Z3 1794 aa8.51□□□□□ -1.05
PTPRM-213ENST00000580949 THEMISQ8N1K5 641 aaPredicted RBP8.51□□□□□ -1.05
PTPRM-213ENST00000580949 CARD14Q9BXL6 1004 aa8.51□□□□□ -1.05
PTPRM-213ENST00000580949 UBR1Q8IWV7 1749 aa8.51□□□□□ -1.05
PTPRM-213ENST00000580949 ABCC11Q96J66 1382 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 ADAMTSL3P82987 1691 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 ADAMTS13Q76LX8 1427 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 WAPLQ7Z5K2 1190 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 HELBQ8NG08 1087 aaPredicted RBP8.5□□□□□ -1.05
PTPRM-213ENST00000580949 MYO3AQ8NEV4 1616 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 NRXN3Q9Y4C0 1643 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 ARHGAP23Q9P227 1491 aa8.5□□□□□ -1.05
PTPRM-213ENST00000580949 PLEKHG1Q9ULL1 1385 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 PLEKHH1Q9ULM0 1364 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 PPEF1O14829 653 aaPredicted RBP8.49□□□□□ -1.05
PTPRM-213ENST00000580949 RFC5P40937 340 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 PTPRNQ16849 979 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 LYPD8Q6UX82 237 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 SLC12A5Q9H2X9 1139 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 POGKQ9P215 609 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 FCF1Q9Y324 198 aaKnown RBP8.49□□□□□ -1.05
PTPRM-213ENST00000580949 KDM5AP29375 1690 aaKnown RBP8.49□□□□□ -1.05
PTPRM-213ENST00000580949 SLIT1O75093 1534 aa8.49□□□□□ -1.05
PTPRM-213ENST00000580949 RGS20O76081 388 aa8.48□□□□□ -1.05
PTPRM-213ENST00000580949 RALBP1Q15311 655 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms