RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ATF5Q9Y2D1 282 aaPredicted RBP19.93■□□□□ 0.78
SS18-212ENST00000579061 ADAMTS7Q9UKP4 1686 aa19.91■□□□□ 0.78
SS18-212ENST00000579061 MTHFSDQ2M296 383 aaKnown RBP19.91■□□□□ 0.78
SS18-212ENST00000579061 FLAD1Q8NFF5 587 aa19.91■□□□□ 0.78
SS18-212ENST00000579061 SGIP1Q9BQI5 828 aa19.91■□□□□ 0.78
SS18-212ENST00000579061 UBR3Q6ZT12 1888 aa19.9■□□□□ 0.78
SS18-212ENST00000579061 ATP6V1AP38606 617 aa19.89■□□□□ 0.77
SS18-212ENST00000579061 NFATC2IPQ8NCF5 419 aa19.89■□□□□ 0.77
SS18-212ENST00000579061 GAS2L2Q8NHY3 880 aa19.89■□□□□ 0.77
SS18-212ENST00000579061 MRC1P22897 1456 aa19.88■□□□□ 0.77
SS18-212ENST00000579061 RNMTO43148 476 aaKnown RBP19.88■□□□□ 0.77
SS18-212ENST00000579061 AK7Q96M32 723 aa19.88■□□□□ 0.77
SS18-212ENST00000579061 ITPK1Q13572 414 aa19.87■□□□□ 0.77
SS18-212ENST00000579061 COL23A1Q86Y22 540 aaPredicted RBP19.87■□□□□ 0.77
SS18-212ENST00000579061 LINC00116Q8NCU8 138 aa19.87■□□□□ 0.77
SS18-212ENST00000579061 RSPH6AQ9H0K4 717 aa19.87■□□□□ 0.77
SS18-212ENST00000579061 SLC52A2Q9HAB3 445 aa19.87■□□□□ 0.77
SS18-212ENST00000579061 DDX10Q13206 875 aaKnown RBP19.86■□□□□ 0.77
SS18-212ENST00000579061 RALBP1Q15311 655 aa19.86■□□□□ 0.77
SS18-212ENST00000579061 LGR6Q9HBX8 967 aa19.86■□□□□ 0.77
SS18-212ENST00000579061 COL5A3P25940 1745 aaPredicted RBP19.85■□□□□ 0.77
SS18-212ENST00000579061 CICQ96RK0 1608 aaPredicted RBP19.85■□□□□ 0.77
SS18-212ENST00000579061 FCHSD2O94868 740 aa19.85■□□□□ 0.77
SS18-212ENST00000579061 SLC4A9Q96Q91 983 aa19.85■□□□□ 0.77
SS18-212ENST00000579061 RBM42Q9BTD8 480 aaKnown RBP19.85■□□□□ 0.77
SS18-212ENST00000579061 U2AF1L5P0DN76 240 aaPredicted RBP19.84■□□□□ 0.77
SS18-212ENST00000579061 SSFA2P28290 1259 aa19.84■□□□□ 0.77
SS18-212ENST00000579061 POLD1P28340 1107 aa19.84■□□□□ 0.77
SS18-212ENST00000579061 PRKAR2BP31323 418 aa19.84■□□□□ 0.77
SS18-212ENST00000579061 U2AF1Q01081 240 aaKnown RBP eCLIP19.84■□□□□ 0.772e-6■■■■□ 21.7
SS18-212ENST00000579061 MAP3K5Q99683 1374 aa19.83■□□□□ 0.77
SS18-212ENST00000579061 GNAT3A8MTJ3 354 aa19.83■□□□□ 0.77
SS18-212ENST00000579061 MSH5O43196 834 aa19.83■□□□□ 0.77
SS18-212ENST00000579061 RC3H1Q5TC82 1133 aaKnown RBP19.83■□□□□ 0.77
SS18-212ENST00000579061 ARXQ96QS3 562 aa19.83■□□□□ 0.77
SS18-212ENST00000579061 CNTNAP4Q9C0A0 1308 aa19.81■□□□□ 0.76
SS18-212ENST00000579061 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.81■□□□□ 0.76
SS18-212ENST00000579061 PHACTR3Q96KR7 559 aa19.81■□□□□ 0.76
SS18-212ENST00000579061 MYH14Q7Z406 1995 aaKnown RBP19.81■□□□□ 0.76
SS18-212ENST00000579061 GNPATO15228 680 aa19.8■□□□□ 0.76
SS18-212ENST00000579061 PTCD1O75127 700 aaKnown RBP19.8■□□□□ 0.76
SS18-212ENST00000579061 AMIGO3Q86WK7 504 aa19.8■□□□□ 0.76
SS18-212ENST00000579061 FHDC1Q9C0D6 1143 aaPredicted RBP19.8■□□□□ 0.76
SS18-212ENST00000579061 SIPA1L3O60292 1781 aaPredicted RBP19.8■□□□□ 0.76
SS18-212ENST00000579061 TJP1Q07157 1748 aa19.79■□□□□ 0.76
SS18-212ENST00000579061 IL17REQ8NFR9 667 aa19.79■□□□□ 0.76
SS18-212ENST00000579061 SYT17Q9BSW7 474 aa19.79■□□□□ 0.76
SS18-212ENST00000579061 UBR2Q8IWV8 1755 aa19.78■□□□□ 0.76
SS18-212ENST00000579061 RTCBQ9Y3I0 505 aaKnown RBP19.78■□□□□ 0.76
SS18-212ENST00000579061 CEMIPQ8WUJ3 1361 aa19.78■□□□□ 0.76
SS18-212ENST00000579061 RPS6KA4O75676 772 aa19.77■□□□□ 0.76
SS18-212ENST00000579061 PHF14O94880 888 aa19.77■□□□□ 0.76
SS18-212ENST00000579061 ADRA2BP18089 450 aa19.77■□□□□ 0.76
SS18-212ENST00000579061 TEFQ10587 303 aa19.77■□□□□ 0.76
SS18-212ENST00000579061 KCPQ6ZWJ8 1503 aa19.76■□□□□ 0.75
SS18-212ENST00000579061 DCAF8L1A6NGE4 600 aa19.76■□□□□ 0.75
SS18-212ENST00000579061 VSIG10Q8N0Z9 540 aa19.76■□□□□ 0.75
SS18-212ENST00000579061 MYBBP1AQ9BQG0 1328 aaKnown RBP19.76■□□□□ 0.75
SS18-212ENST00000579061 HTATSF1O43719 755 aaKnown RBP19.75■□□□□ 0.75
SS18-212ENST00000579061 NEFMP07197 916 aa19.75■□□□□ 0.75
SS18-212ENST00000579061 SLC39A6Q13433 755 aa19.75■□□□□ 0.75
SS18-212ENST00000579061 TRAPPC3LQ5T215 181 aa19.75■□□□□ 0.75
SS18-212ENST00000579061 PNNQ9H307 717 aaKnown RBP19.75■□□□□ 0.75
SS18-212ENST00000579061 CRKLP46109 303 aaKnown RBP19.74■□□□□ 0.75
SS18-212ENST00000579061 MSL1Q68DK7 614 aa19.74■□□□□ 0.75
SS18-212ENST00000579061 SMIM5Q71RC9 77 aa19.73■□□□□ 0.75
SS18-212ENST00000579061 TTC5Q8N0Z6 440 aa19.73■□□□□ 0.75
SS18-212ENST00000579061 RTF1Q92541 710 aaKnown RBP19.73■□□□□ 0.75
SS18-212ENST00000579061 DLG5Q8TDM6 1919 aa19.72■□□□□ 0.75
SS18-212ENST00000579061 C4AP0C0L4 1744 aa19.71■□□□□ 0.75
SS18-212ENST00000579061 ZNF790Q6PG37 636 aa19.71■□□□□ 0.75
SS18-212ENST00000579061 DNAJC10Q8IXB1 793 aa19.71■□□□□ 0.75
SS18-212ENST00000579061 ARHGEF1Q92888 912 aaKnown RBP19.71■□□□□ 0.75
SS18-212ENST00000579061 PLEKHF1Q96S99 279 aa19.71■□□□□ 0.75
SS18-212ENST00000579061 INTS5Q6P9B9 1019 aaKnown RBP19.7■□□□□ 0.74
SS18-212ENST00000579061 CCDC87Q9NVE4 849 aa19.7■□□□□ 0.74
SS18-212ENST00000579061 CYP19A1P11511 503 aaPredicted RBP19.69■□□□□ 0.74
SS18-212ENST00000579061 RFC4P35249 363 aa19.69■□□□□ 0.74
SS18-212ENST00000579061 PRKRIP1Q9H875 184 aaPredicted RBP19.69■□□□□ 0.74
SS18-212ENST00000579061 NLGN1Q8N2Q7 840 aa19.68■□□□□ 0.74
SS18-212ENST00000579061 TEX13AQ9BXU3 409 aaPredicted RBP19.68■□□□□ 0.74
SS18-212ENST00000579061 HEG1Q9ULI3 1381 aa19.68■□□□□ 0.74
SS18-212ENST00000579061 BTBD11A6QL63 1104 aa19.67■□□□□ 0.74
SS18-212ENST00000579061 NFE2L2Q16236 605 aa19.67■□□□□ 0.74
SS18-212ENST00000579061 KLHL34Q8N239 644 aa19.67■□□□□ 0.74
SS18-212ENST00000579061 ZNF496Q96IT1 587 aaPredicted RBP19.67■□□□□ 0.74
SS18-212ENST00000579061 FMNL2Q96PY5 1086 aa19.67■□□□□ 0.74
SS18-212ENST00000579061 CD2APQ9Y5K6 639 aa19.67■□□□□ 0.74
SS18-212ENST00000579061 MCM10Q7L590 875 aa19.66■□□□□ 0.74
SS18-212ENST00000579061 MAPK8IP3Q9UPT6 1336 aa19.66■□□□□ 0.74
SS18-212ENST00000579061 STARD3NLO95772 234 aa19.65■□□□□ 0.74
SS18-212ENST00000579061 GYS1P13807 737 aa19.65■□□□□ 0.74
SS18-212ENST00000579061 SOS1Q07889 1333 aaPredicted RBP19.65■□□□□ 0.74
SS18-212ENST00000579061 DCTN1Q14203 1278 aa19.64■□□□□ 0.73
SS18-212ENST00000579061 USP42Q9H9J4 1324 aaKnown RBP19.64■□□□□ 0.73
SS18-212ENST00000579061 ZNF316A6NFI3 1004 aaPredicted RBP19.63■□□□□ 0.73
SS18-212ENST00000579061 TAF7Q15545 349 aaPredicted RBP19.63■□□□□ 0.73
SS18-212ENST00000579061 NLGN2Q8NFZ4 835 aa19.63■□□□□ 0.73
SS18-212ENST00000579061 ZBTB1Q9Y2K1 713 aa19.63■□□□□ 0.73
SS18-212ENST00000579061 KCNQ3O43525 872 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms