RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 TMCO3Q6UWJ1 677 aa12.21□□□□□ -0.45
PTPRM-205ENST00000577827 NUTM1Q86Y26 1132 aa12.21□□□□□ -0.45
PTPRM-205ENST00000577827 NUDT16Q96DE0 195 aaKnown RBP12.21□□□□□ -0.45
PTPRM-205ENST00000577827 CEP89Q96ST8 783 aa12.21□□□□□ -0.45
PTPRM-205ENST00000577827 CTNNA3Q9UI47 895 aa12.21□□□□□ -0.45
PTPRM-205ENST00000577827 CLIP2Q9UDT6 1046 aa12.21□□□□□ -0.46
PTPRM-205ENST00000577827 GNAT3A8MTJ3 354 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 INTS4Q96HW7 963 aaKnown RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 BCL11BQ9C0K0 894 aaPredicted RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 CDKL5O76039 1030 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 PRPF40BQ6NWY9 871 aaKnown RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 CALCOCO1Q9P1Z2 691 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 FERMT3Q86UX7 667 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 PPFIBP1Q86W92 1011 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 ABTB2Q8N961 1025 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 NOL7Q9UMY1 257 aaKnown RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 ATP10BO94823 1461 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 ZSCAN12O43309 604 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 ZSCAN22P10073 491 aaPredicted RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 PRIM1P49642 420 aaKnown RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 PPP4R3BQ5MIZ7 849 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 MRPL50Q8N5N7 158 aaKnown RBP12.2□□□□□ -0.46
PTPRM-205ENST00000577827 DCTPP1Q9H773 170 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 TBC1D2BQ9UPU7 963 aa12.2□□□□□ -0.46
PTPRM-205ENST00000577827 SPINK5Q9NQ38 1064 aaPredicted RBP12.19□□□□□ -0.46
PTPRM-205ENST00000577827 HMGB1P09429 215 aaKnown RBP12.19□□□□□ -0.46
PTPRM-205ENST00000577827 CAMK4Q16566 473 aa12.19□□□□□ -0.46
PTPRM-205ENST00000577827 MCM10Q7L590 875 aa12.19□□□□□ -0.46
PTPRM-205ENST00000577827 HCLS1P14317 486 aaPredicted RBP12.18□□□□□ -0.46
PTPRM-205ENST00000577827 AMOTL1Q8IY63 956 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 CAGE1Q8TC20 777 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 ZNF445P59923 1031 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 DCTN1Q14203 1278 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 GDPD2Q9HCC8 539 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 ADGRL1O94910 1474 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 PDE1AP54750 535 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 CCDC158Q5M9N0 1113 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 GBP3Q9H0R5 595 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 PRDM10Q9NQV6 1147 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 EMILIN1Q9Y6C2 1016 aa12.18□□□□□ -0.46
PTPRM-205ENST00000577827 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTPRM-205ENST00000577827 ESYT1Q9BSJ8 1104 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 CCDC171Q6TFL3 1326 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 TTC21BQ7Z4L5 1316 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 KIAA0556O60303 1618 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 ZNF165P49910 485 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 FAM200AQ8TCP9 573 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 GJB2P29033 226 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 FLIIQ13045 1269 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 TAF7Q15545 349 aaPredicted RBP12.17□□□□□ -0.46
PTPRM-205ENST00000577827 ZNF530Q6P9A1 599 aaPredicted RBP12.17□□□□□ -0.46
PTPRM-205ENST00000577827 TRIM22Q8IYM9 498 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 C16orf45Q96MC5 204 aaPredicted RBP12.17□□□□□ -0.46
PTPRM-205ENST00000577827 RBM42Q9BTD8 480 aaKnown RBP12.17□□□□□ -0.46
PTPRM-205ENST00000577827 TNNQ9UQP3 1299 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 LRRFIP2Q9Y608 721 aaKnown RBP12.17□□□□□ -0.46
PTPRM-205ENST00000577827 EVI5LQ96CN4 794 aa12.17□□□□□ -0.46
PTPRM-205ENST00000577827 SAMD9Q5K651 1589 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 STX1AQ16623 288 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 A2MP01023 1474 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 GTF2E1P29083 439 aaPredicted RBP12.16□□□□□ -0.46
PTPRM-205ENST00000577827 TXLNAP40222 546 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 CCDC94Q9BW85 323 aaPredicted RBP12.16□□□□□ -0.46
PTPRM-205ENST00000577827 CARD14Q9BXL6 1004 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 GTPBP4Q9BZE4 634 aaKnown RBP12.16□□□□□ -0.46
PTPRM-205ENST00000577827 KDM5BQ9UGL1 1544 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 ECHDC1Q9NTX5 307 aa12.16□□□□□ -0.46
PTPRM-205ENST00000577827 U3KPZ7 1027 aaPredicted RBP12.16□□□□□ -0.46
PTPRM-205ENST00000577827 F6X3S4 739 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 H0YHG0 523 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 ZSCAN25Q6NSZ9 544 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 ZNHIT6Q9NWK9 470 aaKnown RBP12.15□□□□□ -0.46
PTPRM-205ENST00000577827 FYB1O15117 783 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 TUBB4AP04350 444 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 CFAP100Q494V2 611 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 USP48Q86UV5 1035 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 NME9Q86XW9 330 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 USP26Q9BXU7 913 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 SIL1Q9H173 461 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 HMG20BQ9P0W2 317 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 VAMP4O75379 141 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 CLSTN1O94985 981 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 PLCH2O75038 1416 aa12.15□□□□□ -0.46
PTPRM-205ENST00000577827 BMS1Q14692 1282 aaKnown RBP12.15□□□□□ -0.47
PTPRM-205ENST00000577827 NUTM2GQ5VZR2 741 aa12.15□□□□□ -0.47
PTPRM-205ENST00000577827 PLEKHM2Q8IWE5 1019 aa12.15□□□□□ -0.47
PTPRM-205ENST00000577827 CKAP2LQ8IYA6 745 aa12.15□□□□□ -0.47
PTPRM-205ENST00000577827 ZSCAN16Q9H4T2 348 aaPredicted RBP12.14□□□□□ -0.47
PTPRM-205ENST00000577827 SYCP2Q9BX26 1530 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 GOLGA6L9A6NEM1 432 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 TXLNBQ8N3L3 684 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 NLRP2Q9NX02 1062 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 MAGEC2Q9UBF1 373 aaPredicted RBP12.14□□□□□ -0.47
PTPRM-205ENST00000577827 WASLO00401 505 aaPredicted RBP12.14□□□□□ -0.47
PTPRM-205ENST00000577827 SMAP1Q8IYB5 467 aaPredicted RBP12.14□□□□□ -0.47
PTPRM-205ENST00000577827 DNAAF4Q8WXU2 420 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 WASF1Q92558 559 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 DDX11Q96FC9 970 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 USP8P40818 1118 aa12.14□□□□□ -0.47
PTPRM-205ENST00000577827 IQCEQ6IPM2 695 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms