RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 TMEM164Q5U3C3 297 aa9.21□□□□□ -0.94
VPS53-217ENST00000575100 EGFLAMQ63HQ2 1017 aa9.21□□□□□ -0.94
VPS53-217ENST00000575100 GJD4Q96KN9 370 aaPredicted RBP9.21□□□□□ -0.94
VPS53-217ENST00000575100 TSPYL2Q9H2G4 693 aaPredicted RBP9.21□□□□□ -0.94
VPS53-217ENST00000575100 CUEDC1Q9NWM3 386 aaPredicted RBP9.21□□□□□ -0.94
VPS53-217ENST00000575100 PRAG1Q86YV5 1406 aa9.2□□□□□ -0.94
VPS53-217ENST00000575100 PTGER2P43116 358 aa9.2□□□□□ -0.94
VPS53-217ENST00000575100 CCDC181Q5TID7 509 aa9.2□□□□□ -0.94
VPS53-217ENST00000575100 ZMIZ1Q9ULJ6 1067 aa9.2□□□□□ -0.94
VPS53-217ENST00000575100 METP08581 1390 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 TAGLNQ01995 201 aaKnown RBP9.19□□□□□ -0.94
VPS53-217ENST00000575100 DIXDC1Q155Q3 683 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 PIP4P2Q8N4L2 257 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 NDUFB9Q9Y6M9 179 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 SSFA2P28290 1259 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 TUSC1Q2TAM9 212 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 DNAJC2Q99543 621 aaKnown RBP9.19□□□□□ -0.94
VPS53-217ENST00000575100 KLHL42Q9P2K6 505 aa9.19□□□□□ -0.94
VPS53-217ENST00000575100 PNPLA6Q8IY17 1366 aa9.18□□□□□ -0.94
VPS53-217ENST00000575100 ADGRF5Q8IZF2 1346 aa9.18□□□□□ -0.94
VPS53-217ENST00000575100 IFT172Q9UG01 1749 aa9.18□□□□□ -0.94
VPS53-217ENST00000575100 RXRBP28702 533 aa9.18□□□□□ -0.94
VPS53-217ENST00000575100 PKNOX2Q96KN3 472 aa9.18□□□□□ -0.94
VPS53-217ENST00000575100 PTCH1Q13635 1447 aa9.18□□□□□ -0.94
VPS53-217ENST00000575100 COL22A1Q8NFW1 1626 aaPredicted RBP9.18□□□□□ -0.94
VPS53-217ENST00000575100 STK32AQ8WU08 396 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 AFF2P51816 1311 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 PPLO60437 1756 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 VAC14Q08AM6 782 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 TSNAXIP1Q2TAA8 658 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 IFNL1Q8IU54 200 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 REM2Q8IYK8 340 aaPredicted RBP9.17□□□□□ -0.94
VPS53-217ENST00000575100 ZNF710Q8N1W2 664 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 PIK3R5Q8WYR1 880 aa9.17□□□□□ -0.94
VPS53-217ENST00000575100 LRRC59Q96AG4 307 aaKnown RBP9.17□□□□□ -0.94
VPS53-217ENST00000575100 C1orf167Q5SNV9 1468 aa9.16□□□□□ -0.94
VPS53-217ENST00000575100 RGS12O14924 1447 aa9.16□□□□□ -0.94
VPS53-217ENST00000575100 MCCD1P59942 119 aaPredicted RBP9.16□□□□□ -0.94
VPS53-217ENST00000575100 NBPF1Q3BBV0 1214 aa9.16□□□□□ -0.94
VPS53-217ENST00000575100 MARF1Q9Y4F3 1742 aaKnown RBP9.16□□□□□ -0.94
VPS53-217ENST00000575100 USP17L8P0C7I0 530 aa9.15□□□□□ -0.94
VPS53-217ENST00000575100 SERPINB4P48594 390 aa9.15□□□□□ -0.94
VPS53-217ENST00000575100 HSP90AB4PQ58FF6 505 aa9.15□□□□□ -0.94
VPS53-217ENST00000575100 L3MBTL3Q96JM7 780 aaPredicted RBP9.15□□□□□ -0.94
VPS53-217ENST00000575100 TRPM1Q7Z4N2 1603 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 NUTM2BA6NNL0 878 aaPredicted RBP9.15□□□□□ -0.95
VPS53-217ENST00000575100 NUTM2EB1AL46 878 aaPredicted RBP9.15□□□□□ -0.95
VPS53-217ENST00000575100 FOXK1P85037 733 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 PSME1Q06323 249 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 RIC3Q7Z5B4 369 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 NUTM2AQ8IVF1 878 aaPredicted RBP9.15□□□□□ -0.95
VPS53-217ENST00000575100 KCNB2Q92953 911 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 SPACA7Q96KW9 195 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 TANGO6Q9C0B7 1094 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 CCDC61Q9Y6R9 512 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 MYOM2P54296 1465 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 RALGAPBQ86X10 1494 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 NRXN1Q9ULB1 1477 aa9.15□□□□□ -0.95
VPS53-217ENST00000575100 MAFGO15525 162 aa9.14□□□□□ -0.95
VPS53-217ENST00000575100 AP1G2O75843 785 aa9.14□□□□□ -0.95
VPS53-217ENST00000575100 SDE2Q6IQ49 451 aa9.14□□□□□ -0.95
VPS53-217ENST00000575100 DDX12PQ92771 950 aa9.14□□□□□ -0.95
VPS53-217ENST00000575100 CDC42BPGQ6DT37 1551 aa9.14□□□□□ -0.95
VPS53-217ENST00000575100 PARNO95453 639 aaKnown RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 RBM6P78332 1123 aaKnown RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 SETQ01105 290 aaPredicted RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 PTPROQ16827 1216 aa9.13□□□□□ -0.95
VPS53-217ENST00000575100 PRR7Q8TB68 274 aa9.13□□□□□ -0.95
VPS53-217ENST00000575100 NPDC1Q9NQX5 325 aaPredicted RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 PIK3C2GO75747 1445 aa9.13□□□□□ -0.95
VPS53-217ENST00000575100 SOS2Q07890 1332 aaPredicted RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 HDLBPQ00341 1268 aaKnown RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 MAGEC2Q9UBF1 373 aaPredicted RBP9.13□□□□□ -0.95
VPS53-217ENST00000575100 RPGRIP1LQ68CZ1 1315 aa9.13□□□□□ -0.95
VPS53-217ENST00000575100 MAP4K4O95819 1239 aaPredicted RBP9.12□□□□□ -0.95
VPS53-217ENST00000575100 IGBP1P78318 339 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 RAD51AP2Q09MP3 1159 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 MORC4Q8TE76 937 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 VTI1AQ96AJ9 217 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 BACH2Q9BYV9 841 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.12□□□□□ -0.95
VPS53-217ENST00000575100 ROCK2O75116 1388 aaKnown RBP9.12□□□□□ -0.95
VPS53-217ENST00000575100 ROBO2Q9HCK4 1378 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 hCG_2014768A0A024R1R8 64 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 CCDC144BQ3MJ40 725 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 TBC1D9Q6ZT07 1266 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 NLGN1Q8N2Q7 840 aa9.12□□□□□ -0.95
VPS53-217ENST00000575100 DDX17Q92841 729 aaKnown RBP9.12□□□□□ -0.95
VPS53-217ENST00000575100 KNDC1Q76NI1 1749 aa9.11□□□□□ -0.95
VPS53-217ENST00000575100 ATRNO75882 1429 aa9.11□□□□□ -0.95
VPS53-217ENST00000575100 MAP3K9P80192 1104 aa9.11□□□□□ -0.95
VPS53-217ENST00000575100 QPCTQ16769 361 aa9.11□□□□□ -0.95
VPS53-217ENST00000575100 QTRT2Q9H974 415 aaKnown RBP9.11□□□□□ -0.95
VPS53-217ENST00000575100 GPRASP1Q5JY77 1395 aa9.11□□□□□ -0.95
VPS53-217ENST00000575100 PITPNM1O00562 1244 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 SPTLC1O15269 473 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 PEX14O75381 377 aa9.1□□□□□ -0.95
VPS53-217ENST00000575100 CENPBP07199 599 aaPredicted RBP9.1□□□□□ -0.95
VPS53-217ENST00000575100 HSPA5P11021 654 aaKnown RBP9.1□□□□□ -0.95
VPS53-217ENST00000575100 METTL3Q86U44 580 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms