RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NFATC2IPQ8NCF5 419 aa22.37■■□□□ 1.17
NUP88-210ENST00000574867 THUMPD2Q9BTF0 503 aaKnown RBP22.37■■□□□ 1.17
NUP88-210ENST00000574867 PIGBQ92521 554 aa22.37■■□□□ 1.17
NUP88-210ENST00000574867 RGPD3A6NKT7 1758 aaPredicted RBP22.36■■□□□ 1.17
NUP88-210ENST00000574867 RGPD4Q7Z3J3 1758 aa22.36■■□□□ 1.17
NUP88-210ENST00000574867 SENP3-EIF4A1A0A087X0R7 540 aa22.36■■□□□ 1.17
NUP88-210ENST00000574867 CCDC125Q86Z20 511 aa22.36■■□□□ 1.17
NUP88-210ENST00000574867 SALL2Q9Y467 1007 aaPredicted RBP22.35■■□□□ 1.17
NUP88-210ENST00000574867 HNRNPUQ00839 825 aaKnown RBP eCLIP22.34■■□□□ 1.17
NUP88-210ENST00000574867 KDM3BQ7LBC6 1761 aa22.34■■□□□ 1.17
NUP88-210ENST00000574867 SF3B2Q13435 895 aaKnown RBP22.34■■□□□ 1.17
NUP88-210ENST00000574867 TAF7Q15545 349 aaPredicted RBP22.34■■□□□ 1.17
NUP88-210ENST00000574867 PTF1AQ7RTS3 328 aa22.34■■□□□ 1.17
NUP88-210ENST00000574867 UBR2Q8IWV8 1755 aa22.32■■□□□ 1.16
NUP88-210ENST00000574867 WDR63Q8IWG1 891 aa22.32■■□□□ 1.16
NUP88-210ENST00000574867 BABAM1Q9NWV8 329 aa22.32■■□□□ 1.16
NUP88-210ENST00000574867 IL16Q14005 1332 aa22.32■■□□□ 1.16
NUP88-210ENST00000574867 ZNF521Q96K83 1311 aa22.32■■□□□ 1.16
NUP88-210ENST00000574867 BTBD11A6QL63 1104 aa22.32■■□□□ 1.16
NUP88-210ENST00000574867 SMARCC1Q92922 1105 aaPredicted RBP22.32■■□□□ 1.16
NUP88-210ENST00000574867 LY75O60449 1722 aa22.31■■□□□ 1.16
NUP88-210ENST00000574867 PALLDQ8WX93 1383 aa22.3■■□□□ 1.16
NUP88-210ENST00000574867 APBA3O96018 575 aa22.3■■□□□ 1.16
NUP88-210ENST00000574867 IFT57Q9NWB7 429 aa22.3■■□□□ 1.16
NUP88-210ENST00000574867 TTC5Q8N0Z6 440 aa22.29■■□□□ 1.16
NUP88-210ENST00000574867 CFAP44Q96MT7 982 aa22.29■■□□□ 1.16
NUP88-210ENST00000574867 ATG3Q9NT62 314 aa22.29■■□□□ 1.16
NUP88-210ENST00000574867 ASAP1Q9ULH1 1129 aa22.29■■□□□ 1.16
NUP88-210ENST00000574867 GNAI1P63096 354 aa22.29■■□□□ 1.16
NUP88-210ENST00000574867 UPF1Q92900 1129 aaKnown RBP eCLIP22.29■■□□□ 1.16
NUP88-210ENST00000574867 ZNF831Q5JPB2 1677 aa22.28■■□□□ 1.16
NUP88-210ENST00000574867 KCPQ6ZWJ8 1503 aa22.28■■□□□ 1.16
NUP88-210ENST00000574867 PLSCR1O15162 318 aa22.28■■□□□ 1.16
NUP88-210ENST00000574867 ZNF790Q6PG37 636 aa22.28■■□□□ 1.16
NUP88-210ENST00000574867 BAG6P46379 1132 aa22.27■■□□□ 1.16
NUP88-210ENST00000574867 TSPYL4Q9UJ04 414 aa22.27■■□□□ 1.16
NUP88-210ENST00000574867 CHL1O00533 1208 aa22.27■■□□□ 1.16
NUP88-210ENST00000574867 ZNF853P0CG23 659 aa22.27■■□□□ 1.16
NUP88-210ENST00000574867 ZBED9Q6R2W3 1325 aa22.27■■□□□ 1.16
NUP88-210ENST00000574867 CICQ96RK0 1608 aaPredicted RBP22.26■■□□□ 1.15
NUP88-210ENST00000574867 SLC39A6Q13433 755 aa22.26■■□□□ 1.15
NUP88-210ENST00000574867 LAS1LQ9Y4W2 734 aaKnown RBP22.26■■□□□ 1.15
NUP88-210ENST00000574867 GOLGA2Q08379 1002 aa22.24■■□□□ 1.15
NUP88-210ENST00000574867 MIS18AQ9NYP9 233 aa22.24■■□□□ 1.15
NUP88-210ENST00000574867 RREB1Q92766 1687 aa22.23■■□□□ 1.15
NUP88-210ENST00000574867 MYH16Q9H6N6 1097 aa22.22■■□□□ 1.15
NUP88-210ENST00000574867 MBIPQ9NS73 344 aa22.22■■□□□ 1.15
NUP88-210ENST00000574867 FMNL2Q96PY5 1086 aa22.22■■□□□ 1.15
NUP88-210ENST00000574867 LOC102724428A0A0B4J2F2 783 aa22.21■■□□□ 1.15
NUP88-210ENST00000574867 SIK1P57059 783 aa22.21■■□□□ 1.15
NUP88-210ENST00000574867 SLC27A3Q5K4L6 730 aa22.21■■□□□ 1.15
NUP88-210ENST00000574867 E9PSI1 815 aa22.21■■□□□ 1.15
NUP88-210ENST00000574867 KCNQ3O43525 872 aa22.21■■□□□ 1.15
NUP88-210ENST00000574867 PTCD1O75127 700 aaKnown RBP22.21■■□□□ 1.15
NUP88-210ENST00000574867 VSIG10Q8N0Z9 540 aa22.21■■□□□ 1.15
NUP88-210ENST00000574867 ZNF496Q96IT1 587 aaPredicted RBP22.21■■□□□ 1.15
NUP88-210ENST00000574867 RBM42Q9BTD8 480 aaKnown RBP22.21■■□□□ 1.15
NUP88-210ENST00000574867 TJP1Q07157 1748 aa22.2■■□□□ 1.15
NUP88-210ENST00000574867 HEG1Q9ULI3 1381 aa22.2■■□□□ 1.15
NUP88-210ENST00000574867 CAMKK2Q96RR4 588 aa22.2■■□□□ 1.14
NUP88-210ENST00000574867 HMGB2P26583 209 aaKnown RBP22.19■■□□□ 1.14
NUP88-210ENST00000574867 EIF4A1P60842 406 aaKnown RBP22.19■■□□□ 1.14
NUP88-210ENST00000574867 EN1Q05925 392 aaPredicted RBP22.19■■□□□ 1.14
NUP88-210ENST00000574867 CCNL1Q9UK58 526 aaPredicted RBP22.19■■□□□ 1.14
NUP88-210ENST00000574867 C5P01031 1676 aa22.19■■□□□ 1.14
NUP88-210ENST00000574867 FANCIQ9NVI1 1328 aa22.19■■□□□ 1.14
NUP88-210ENST00000574867 TXNRD1Q16881 649 aa22.19■■□□□ 1.14
NUP88-210ENST00000574867 DEFB132Q7Z7B7 95 aa22.19■■□□□ 1.14
NUP88-210ENST00000574867 LAMB4A4D0S4 1761 aa22.19■■□□□ 1.14
NUP88-210ENST00000574867 COL5A3P25940 1745 aaPredicted RBP22.18■■□□□ 1.14
NUP88-210ENST00000574867 TAF1LQ8IZX4 1826 aa22.18■■□□□ 1.14
NUP88-210ENST00000574867 SPINK5Q9NQ38 1064 aaPredicted RBP22.18■■□□□ 1.14
NUP88-210ENST00000574867 ATP6V1AP38606 617 aa22.17■■□□□ 1.14
NUP88-210ENST00000574867 TSR2Q969E8 191 aaKnown RBP22.17■■□□□ 1.14
NUP88-210ENST00000574867 NUP188Q5SRE5 1749 aa22.17■■□□□ 1.14
NUP88-210ENST00000574867 SLFN5Q08AF3 891 aa22.16■■□□□ 1.14
NUP88-210ENST00000574867 EZH2Q15910 746 aaKnown RBP22.16■■□□□ 1.14
NUP88-210ENST00000574867 YTHDC1Q96MU7 727 aaKnown RBP22.16■■□□□ 1.14
NUP88-210ENST00000574867 SLC4A9Q96Q91 983 aa22.16■■□□□ 1.14
NUP88-210ENST00000574867 SNRPA1P09661 255 aaKnown RBP22.15■■□□□ 1.14
NUP88-210ENST00000574867 PROM2Q8N271 834 aa22.15■■□□□ 1.14
NUP88-210ENST00000574867 TEX13AQ9BXU3 409 aaPredicted RBP22.15■■□□□ 1.14
NUP88-210ENST00000574867 HOXB7P09629 217 aa22.13■■□□□ 1.13
NUP88-210ENST00000574867 CDCA7LQ96GN5 454 aa22.13■■□□□ 1.13
NUP88-210ENST00000574867 LRRC4BQ9NT99 713 aa22.13■■□□□ 1.13
NUP88-210ENST00000574867 SOS1Q07889 1333 aaPredicted RBP22.13■■□□□ 1.13
NUP88-210ENST00000574867 GIGYF1O75420 1035 aaPredicted RBP22.13■■□□□ 1.13
NUP88-210ENST00000574867 ITPK1Q13572 414 aa22.13■■□□□ 1.13
NUP88-210ENST00000574867 C4BP0C0L5 1744 aa22.12■■□□□ 1.13
NUP88-210ENST00000574867 SOCS7O14512 581 aa22.12■■□□□ 1.13
NUP88-210ENST00000574867 TRMT2AQ8IZ69 625 aaKnown RBP22.12■■□□□ 1.13
NUP88-210ENST00000574867 DNAJC10Q8IXB1 793 aa22.11■■□□□ 1.13
NUP88-210ENST00000574867 KCNQ4P56696 695 aa22.1■■□□□ 1.13
NUP88-210ENST00000574867 STARD3NLO95772 234 aa22.1■■□□□ 1.13
NUP88-210ENST00000574867 KRT24Q2M2I5 525 aa22.1■■□□□ 1.13
NUP88-210ENST00000574867 DUSP27Q5VZP5 1158 aa22.1■■□□□ 1.13
NUP88-210ENST00000574867 CNTNAP4Q9C0A0 1308 aa22.09■■□□□ 1.13
NUP88-210ENST00000574867 LINC00116Q8NCU8 138 aa22.09■■□□□ 1.13
NUP88-210ENST00000574867 C8orf58Q8NAV2 365 aa22.08■■□□□ 1.13
NUP88-210ENST00000574867 EXOSC9Q06265 439 aaKnown RBP22.08■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms