RNA–Protein interactions for RNA: ENST00000574662.1

SMPD3-212, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-212ENST00000574662 CALD1Q05682 793 aaKnown RBP20.6■□□□□ 0.89
SMPD3-212ENST00000574662 SEPT12Q8IYM1 358 aa20.6■□□□□ 0.89
SMPD3-212ENST00000574662 MIS18AQ9NYP9 233 aa20.6■□□□□ 0.89
SMPD3-212ENST00000574662 RCAN3Q9UKA8 241 aa20.6■□□□□ 0.89
SMPD3-212ENST00000574662 TSR2Q969E8 191 aaKnown RBP20.59■□□□□ 0.89
SMPD3-212ENST00000574662 LRRC37A3O60309 1634 aa20.59■□□□□ 0.89
SMPD3-212ENST00000574662 RBM6P78332 1123 aaKnown RBP20.59■□□□□ 0.89
SMPD3-212ENST00000574662 CFAP44Q96MT7 982 aa20.59■□□□□ 0.89
SMPD3-212ENST00000574662 IFT57Q9NWB7 429 aa20.59■□□□□ 0.89
SMPD3-212ENST00000574662 THSD7AQ9UPZ6 1657 aa20.59■□□□□ 0.89
SMPD3-212ENST00000574662 CHL1O00533 1208 aa20.58■□□□□ 0.89
SMPD3-212ENST00000574662 RXRBP28702 533 aa20.58■□□□□ 0.89
SMPD3-212ENST00000574662 TAF7Q15545 349 aaPredicted RBP20.58■□□□□ 0.89
SMPD3-212ENST00000574662 ADAMTS7Q9UKP4 1686 aa20.58■□□□□ 0.88
SMPD3-212ENST00000574662 GNAI1P63096 354 aa20.57■□□□□ 0.88
SMPD3-212ENST00000574662 NFATC2IPQ8NCF5 419 aa20.57■□□□□ 0.88
SMPD3-212ENST00000574662 MBIPQ9NS73 344 aa20.57■□□□□ 0.88
SMPD3-212ENST00000574662 TEFQ10587 303 aa20.56■□□□□ 0.88
SMPD3-212ENST00000574662 MYH16Q9H6N6 1097 aa20.56■□□□□ 0.88
SMPD3-212ENST00000574662 SLC52A2Q9HAB3 445 aa20.56■□□□□ 0.88
SMPD3-212ENST00000574662 SCN11AQ9UI33 1791 aa20.55■□□□□ 0.88
SMPD3-212ENST00000574662 ERVV-2B6SEH9 535 aa20.54■□□□□ 0.88
SMPD3-212ENST00000574662 FAM182BQ5T319 152 aa20.54■□□□□ 0.88
SMPD3-212ENST00000574662 VIRMAQ69YN4 1812 aaKnown RBP20.53■□□□□ 0.88
SMPD3-212ENST00000574662 CABP4P57796 275 aa20.53■□□□□ 0.88
SMPD3-212ENST00000574662 KCNQ3O43525 872 aa20.52■□□□□ 0.88
SMPD3-212ENST00000574662 ANP32AP39687 249 aaKnown RBP20.52■□□□□ 0.88
SMPD3-212ENST00000574662 TSPYL4Q9UJ04 414 aa20.52■□□□□ 0.88
SMPD3-212ENST00000574662 BTBD11A6QL63 1104 aa20.51■□□□□ 0.87
SMPD3-212ENST00000574662 EXOSC9Q06265 439 aaKnown RBP20.51■□□□□ 0.87
SMPD3-212ENST00000574662 NOP58Q9Y2X3 529 aaKnown RBP20.51■□□□□ 0.87
SMPD3-212ENST00000574662 ACSBG1Q96GR2 724 aa20.5■□□□□ 0.87
SMPD3-212ENST00000574662 BABAM1Q9NWV8 329 aa20.5■□□□□ 0.87
SMPD3-212ENST00000574662 TOGARAM1Q9Y4F4 1720 aa20.5■□□□□ 0.87
SMPD3-212ENST00000574662 MRC1P22897 1456 aa20.5■□□□□ 0.87
SMPD3-212ENST00000574662 PRIM1P49642 420 aaKnown RBP20.49■□□□□ 0.87
SMPD3-212ENST00000574662 SLC39A6Q13433 755 aa20.49■□□□□ 0.87
SMPD3-212ENST00000574662 KRT24Q2M2I5 525 aa20.49■□□□□ 0.87
SMPD3-212ENST00000574662 PIGBQ92521 554 aa20.49■□□□□ 0.87
SMPD3-212ENST00000574662 SIPA1L3O60292 1781 aaPredicted RBP20.48■□□□□ 0.87
SMPD3-212ENST00000574662 TCERG1O14776 1098 aaKnown RBP20.48■□□□□ 0.87
SMPD3-212ENST00000574662 TSPYL6Q8N831 410 aa20.48■□□□□ 0.87
SMPD3-212ENST00000574662 C8orf58Q8NAV2 365 aa20.48■□□□□ 0.87
SMPD3-212ENST00000574662 EXOC6Q8TAG9 804 aa20.47■□□□□ 0.87
SMPD3-212ENST00000574662 ELL2O00472 640 aaPredicted RBP20.46■□□□□ 0.87
SMPD3-212ENST00000574662 KCNQ2O43526 872 aa20.46■□□□□ 0.87
SMPD3-212ENST00000574662 KRT27Q7Z3Y8 459 aa20.46■□□□□ 0.87
SMPD3-212ENST00000574662 TMOD3Q9NYL9 352 aa20.46■□□□□ 0.87
SMPD3-212ENST00000574662 SYTL4Q96C24 671 aaPredicted RBP20.46■□□□□ 0.87
SMPD3-212ENST00000574662 EIF4A1P60842 406 aaKnown RBP20.45■□□□□ 0.86
SMPD3-212ENST00000574662 ZNF790Q6PG37 636 aa20.45■□□□□ 0.86
SMPD3-212ENST00000574662 BRWD3Q6RI45 1802 aa20.45■□□□□ 0.86
SMPD3-212ENST00000574662 PTF1AQ7RTS3 328 aa20.44■□□□□ 0.86
SMPD3-212ENST00000574662 BCL9O00512 1426 aa20.44■□□□□ 0.86
SMPD3-212ENST00000574662 RGS12O14924 1447 aa20.44■□□□□ 0.86
SMPD3-212ENST00000574662 ASAP1Q9ULH1 1129 aa20.44■□□□□ 0.86
SMPD3-212ENST00000574662 VAMP4O75379 141 aa20.43■□□□□ 0.86
SMPD3-212ENST00000574662 MS4A1P11836 297 aa20.43■□□□□ 0.86
SMPD3-212ENST00000574662 IPO9Q96P70 1041 aaKnown RBP20.43■□□□□ 0.86
SMPD3-212ENST00000574662 DOT1LQ8TEK3 1739 aa20.42■□□□□ 0.86
SMPD3-212ENST00000574662 ITGB4P16144 1822 aa20.42■□□□□ 0.86
SMPD3-212ENST00000574662 KDM3BQ7LBC6 1761 aa20.42■□□□□ 0.86
SMPD3-212ENST00000574662 ATG3Q9NT62 314 aa20.42■□□□□ 0.86
SMPD3-212ENST00000574662 KAT6BQ8WYB5 2073 aa20.42■□□□□ 0.86
SMPD3-212ENST00000574662 TWISTNBQ3B726 338 aaPredicted RBP20.41■□□□□ 0.86
SMPD3-212ENST00000574662 ZNF496Q96IT1 587 aaPredicted RBP20.41■□□□□ 0.86
SMPD3-212ENST00000574662 HEG1Q9ULI3 1381 aa20.4■□□□□ 0.86
SMPD3-212ENST00000574662 TTC5Q8N0Z6 440 aa20.39■□□□□ 0.86
SMPD3-212ENST00000574662 PRAMEF22A3QJZ6 481 aa20.39■□□□□ 0.85
SMPD3-212ENST00000574662 FAM196AQ6ZSG2 479 aa20.39■□□□□ 0.85
SMPD3-212ENST00000574662 PTCD1O75127 700 aaKnown RBP20.38■□□□□ 0.85
SMPD3-212ENST00000574662 RARSP54136 660 aaKnown RBP20.38■□□□□ 0.85
SMPD3-212ENST00000574662 GIGYF1O75420 1035 aaPredicted RBP20.37■□□□□ 0.85
SMPD3-212ENST00000574662 CT47B1P0C2W7 299 aaPredicted RBP20.37■□□□□ 0.85
SMPD3-212ENST00000574662 BCAR3O75815 825 aa20.36■□□□□ 0.85
SMPD3-212ENST00000574662 FMNL2Q96PY5 1086 aa20.36■□□□□ 0.85
SMPD3-212ENST00000574662 PAPPAQ13219 1627 aa20.35■□□□□ 0.85
SMPD3-212ENST00000574662 SSH1Q8WYL5 1049 aa20.35■□□□□ 0.85
SMPD3-212ENST00000574662 BCL2L13Q9BXK5 485 aa20.35■□□□□ 0.85
SMPD3-212ENST00000574662 KCPQ6ZWJ8 1503 aa20.35■□□□□ 0.85
SMPD3-212ENST00000574662 NECTIN2Q92692 538 aa20.34■□□□□ 0.85
SMPD3-212ENST00000574662 SLC4A9Q96Q91 983 aa20.34■□□□□ 0.85
SMPD3-212ENST00000574662 ZBTB47Q9UFB7 747 aaPredicted RBP20.34■□□□□ 0.85
SMPD3-212ENST00000574662 SBF2Q86WG5 1849 aa20.33■□□□□ 0.84
SMPD3-212ENST00000574662 RBM42Q9BTD8 480 aaKnown RBP20.33■□□□□ 0.84
SMPD3-212ENST00000574662 BCL11BQ9C0K0 894 aaPredicted RBP20.33■□□□□ 0.84
SMPD3-212ENST00000574662 USP16Q9Y5T5 823 aa20.33■□□□□ 0.84
SMPD3-212ENST00000574662 TRIM37O94972 964 aa20.32■□□□□ 0.84
SMPD3-212ENST00000574662 SNRPA1P09661 255 aaKnown RBP20.32■□□□□ 0.84
SMPD3-212ENST00000574662 EIF2S2P20042 333 aaKnown RBP20.32■□□□□ 0.84
SMPD3-212ENST00000574662 EP400Q96L91 3159 aa20.32■□□□□ 0.84
SMPD3-212ENST00000574662 NHSQ6T4R5 1651 aa20.32■□□□□ 0.84
SMPD3-212ENST00000574662 HOXB7P09629 217 aa20.31■□□□□ 0.84
SMPD3-212ENST00000574662 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.31■□□□□ 0.84
SMPD3-212ENST00000574662 CRBNQ96SW2 442 aa20.31■□□□□ 0.84
SMPD3-212ENST00000574662 UBR2Q8IWV8 1755 aa20.31■□□□□ 0.84
SMPD3-212ENST00000574662 SOS1Q07889 1333 aaPredicted RBP20.31■□□□□ 0.84
SMPD3-212ENST00000574662 ZNF428Q96B54 188 aa20.31■□□□□ 0.84
SMPD3-212ENST00000574662 ALDH1L2Q3SY69 923 aa20.3■□□□□ 0.84
SMPD3-212ENST00000574662 HDGFL1Q5TGJ6 251 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms