RNA–Protein interactions for RNA: ENST00000574408.5

USP43-205, Transcript of ubiquitin specific peptidase 43, humanhuman

TSL 1 (best)

Gene USP43, Length 3,425 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP43-205ENST00000574408 MED1Q15648 1581 aaPredicted RBP13.1□□□□□ -0.31
USP43-205ENST00000574408 HDGFL1Q5TGJ6 251 aa13.1□□□□□ -0.31
USP43-205ENST00000574408 ALS2Q96Q42 1657 aa13.1□□□□□ -0.31
USP43-205ENST00000574408 CCT4P50991 539 aaKnown RBP13.1□□□□□ -0.31
USP43-205ENST00000574408 PXDNQ92626 1479 aa13.09□□□□□ -0.31
USP43-205ENST00000574408 SOS1Q07889 1333 aaPredicted RBP13.09□□□□□ -0.31
USP43-205ENST00000574408 ANKRD44Q8N8A2 993 aa13.09□□□□□ -0.31
USP43-205ENST00000574408 NCAPD2Q15021 1401 aa13.09□□□□□ -0.31
USP43-205ENST00000574408 ATP10DQ9P241 1426 aa13.09□□□□□ -0.31
USP43-205ENST00000574408 NLRP2Q9NX02 1062 aa13.09□□□□□ -0.31
USP43-205ENST00000574408 CEP85Q6P2H3 762 aa13.09□□□□□ -0.31
USP43-205ENST00000574408 KCNQ3O43525 872 aa13.08□□□□□ -0.32
USP43-205ENST00000574408 EIF2S2P20042 333 aaKnown RBP13.08□□□□□ -0.32
USP43-205ENST00000574408 RPAP2Q8IXW5 612 aaPredicted RBP13.08□□□□□ -0.32
USP43-205ENST00000574408 KDM4FA0A1W2PPD8 638 aa13.08□□□□□ -0.32
USP43-205ENST00000574408 BTBD11A6QL63 1104 aa13.08□□□□□ -0.32
USP43-205ENST00000574408 RNMTO43148 476 aaKnown RBP13.08□□□□□ -0.32
USP43-205ENST00000574408 EIF4A1P60842 406 aaKnown RBP13.08□□□□□ -0.32
USP43-205ENST00000574408 TNS3Q68CZ2 1445 aa13.08□□□□□ -0.32
USP43-205ENST00000574408 DCTPP1Q9H773 170 aa13.07□□□□□ -0.32
USP43-205ENST00000574408 CSB-PGBD3P0DP91 1061 aa13.07□□□□□ -0.32
USP43-205ENST00000574408 CHRNA2Q15822 529 aa13.07□□□□□ -0.32
USP43-205ENST00000574408 FAM208AQ9UK61 1670 aaKnown RBP13.07□□□□□ -0.32
USP43-205ENST00000574408 RAPGEF4Q8WZA2 1011 aa13.07□□□□□ -0.32
USP43-205ENST00000574408 RGPD5Q99666 1765 aa13.07□□□□□ -0.32
USP43-205ENST00000574408 MFAP1P55081 439 aaKnown RBP13.06□□□□□ -0.32
USP43-205ENST00000574408 LMTK3Q96Q04 1460 aa13.06□□□□□ -0.32
USP43-205ENST00000574408 LMO7Q8WWI1 1683 aa13.06□□□□□ -0.32
USP43-205ENST00000574408 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
USP43-205ENST00000574408 TBC1D32Q96NH3 1257 aa13.06□□□□□ -0.32
USP43-205ENST00000574408 BRINP3Q76B58 766 aa13.05□□□□□ -0.32
USP43-205ENST00000574408 PHAXQ9H814 394 aaKnown RBP13.05□□□□□ -0.32
USP43-205ENST00000574408 ZNF335Q9H4Z2 1342 aaPredicted RBP13.05□□□□□ -0.32
USP43-205ENST00000574408 APBB1O00213 710 aa13.05□□□□□ -0.32
USP43-205ENST00000574408 BMP2KLQ5H9B9 411 aa13.05□□□□□ -0.32
USP43-205ENST00000574408 HMMRO75330 724 aa13.04□□□□□ -0.32
USP43-205ENST00000574408 CAMTA1Q9Y6Y1 1673 aa13.04□□□□□ -0.32
USP43-205ENST00000574408 GNAI2P04899 355 aa13.04□□□□□ -0.32
USP43-205ENST00000574408 HOXB7P09629 217 aa13.04□□□□□ -0.32
USP43-205ENST00000574408 CHPF2Q9P2E5 772 aa13.04□□□□□ -0.32
USP43-205ENST00000574408 TATP17735 454 aaPredicted RBP13.03□□□□□ -0.32
USP43-205ENST00000574408 CACNA1FO60840 1977 aa13.03□□□□□ -0.32
USP43-205ENST00000574408 ANXA1P04083 346 aa13.03□□□□□ -0.32
USP43-205ENST00000574408 KDM3BQ7LBC6 1761 aa13.02□□□□□ -0.32
USP43-205ENST00000574408 GNAI3P08754 354 aa13.02□□□□□ -0.32
USP43-205ENST00000574408 CHMP4AQ9BY43 222 aa13.02□□□□□ -0.32
USP43-205ENST00000574408 XIRP1Q702N8 1843 aaKnown RBP13.02□□□□□ -0.33
USP43-205ENST00000574408 C22orf23Q9BZE7 217 aa13.02□□□□□ -0.33
USP43-205ENST00000574408 STRCQ7RTU9 1775 aa13.02□□□□□ -0.33
USP43-205ENST00000574408 OVOS2A0A0G2JMS6 1433 aa13.02□□□□□ -0.33
USP43-205ENST00000574408 SMARCA5O60264 1052 aaPredicted RBP13.01□□□□□ -0.33
USP43-205ENST00000574408 C16orf71Q8IYS4 520 aaPredicted RBP13.01□□□□□ -0.33
USP43-205ENST00000574408 PLEKHM2Q8IWE5 1019 aa13.01□□□□□ -0.33
USP43-205ENST00000574408 SLAIN2Q9P270 581 aa13.01□□□□□ -0.33
USP43-205ENST00000574408 BECN1Q14457 450 aa13.01□□□□□ -0.33
USP43-205ENST00000574408 SPG7Q9UQ90 795 aa13.01□□□□□ -0.33
USP43-205ENST00000574408 MEGF6O75095 1541 aa13□□□□□ -0.33
USP43-205ENST00000574408 OTUD7AQ8TE49 926 aaPredicted RBP13□□□□□ -0.33
USP43-205ENST00000574408 GIGYF1O75420 1035 aaPredicted RBP13□□□□□ -0.33
USP43-205ENST00000574408 LRRFIP2Q9Y608 721 aaKnown RBP13□□□□□ -0.33
USP43-205ENST00000574408 COL18A1P39060 1754 aa13□□□□□ -0.33
USP43-205ENST00000574408 SRCIN1Q9C0H9 1055 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 USP44Q9H0E7 712 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 PRDM11Q9NQV5 511 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 PXDNLA1KZ92 1463 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 PRAMEF22A3QJZ6 481 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 PI4KAP2A4QPH2 592 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 UBTFL1P0CB47 393 aaPredicted RBP12.99□□□□□ -0.33
USP43-205ENST00000574408 PHKG2P15735 406 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 PI4KAP1Q8N8J0 262 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 CPDO75976 1380 aa12.99□□□□□ -0.33
USP43-205ENST00000574408 DNAAF4Q8WXU2 420 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 DBF4Q9UBU7 674 aaPredicted RBP12.98□□□□□ -0.33
USP43-205ENST00000574408 BRPF3Q9ULD4 1205 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 EXOC6BQ9Y2D4 811 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 GSPT1P15170 499 aaKnown RBP12.98□□□□□ -0.33
USP43-205ENST00000574408 SLC39A6Q13433 755 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 IFNL2Q8IZJ0 200 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 PNMA6EA0A0J9YXQ4 647 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 TBC1D9Q6ZT07 1266 aa12.98□□□□□ -0.33
USP43-205ENST00000574408 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP43-205ENST00000574408 KDM6AO15550 1401 aaPredicted RBP12.98□□□□□ -0.33
USP43-205ENST00000574408 PROSER3Q2NL68 480 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 SLC52A2Q9HAB3 445 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 SOS2Q07890 1332 aaPredicted RBP12.97□□□□□ -0.33
USP43-205ENST00000574408 ATP8B2P98198 1209 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 TTC22Q5TAA0 569 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 CDC45O75419 566 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 NFATC2IPQ8NCF5 419 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 HEG1Q9ULI3 1381 aa12.97□□□□□ -0.33
USP43-205ENST00000574408 CRYBG1Q9Y4K1 1723 aa12.96□□□□□ -0.33
USP43-205ENST00000574408 CYP27B1O15528 508 aa12.96□□□□□ -0.33
USP43-205ENST00000574408 ZNF790Q6PG37 636 aa12.96□□□□□ -0.33
USP43-205ENST00000574408 ABCC6O95255 1503 aa12.96□□□□□ -0.34
USP43-205ENST00000574408 BEND3Q5T5X7 828 aa12.95□□□□□ -0.34
USP43-205ENST00000574408 TBC1D2Q9BYX2 928 aa12.95□□□□□ -0.34
USP43-205ENST00000574408 ADCY9O60503 1353 aa12.95□□□□□ -0.34
USP43-205ENST00000574408 TOM1L2Q6ZVM7 507 aa12.95□□□□□ -0.34
USP43-205ENST00000574408 ADAMTS7Q9UKP4 1686 aa12.94□□□□□ -0.34
USP43-205ENST00000574408 DCAF5Q96JK2 942 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms