RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 DDX19BQ9UMR2 479 aa14.95□□□□□ -0.02
CIITA-209ENST00000573309 IL16Q14005 1332 aa14.95□□□□□ -0.02
CIITA-209ENST00000573309 NUTM2BA6NNL0 878 aaPredicted RBP14.95□□□□□ -0.02
CIITA-209ENST00000573309 NUTM2EB1AL46 878 aaPredicted RBP14.95□□□□□ -0.02
CIITA-209ENST00000573309 NUTM2AQ8IVF1 878 aaPredicted RBP14.95□□□□□ -0.02
CIITA-209ENST00000573309 RAPGEF4Q8WZA2 1011 aa14.95□□□□□ -0.02
CIITA-209ENST00000573309 ZNF330Q9Y3S2 320 aaPredicted RBP14.95□□□□□ -0.02
CIITA-209ENST00000573309 MON2Q7Z3U7 1717 aa14.95□□□□□ -0.02
CIITA-209ENST00000573309 ANKRD45Q5TZF3 282 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 TOM1L2Q6ZVM7 507 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 KIF16BQ96L93 1317 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 XRN1Q8IZH2 1706 aaKnown RBP14.94□□□□□ -0.02
CIITA-209ENST00000573309 ADAMTS2O95450 1211 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 RAB3GAP1Q15042 981 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 ANKARQ7Z5J8 1434 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 SMC5Q8IY18 1101 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 PIK3C2AO00443 1686 aa14.94□□□□□ -0.02
CIITA-209ENST00000573309 CD2BP2O95400 341 aaKnown RBP14.93□□□□□ -0.02
CIITA-209ENST00000573309 MEIS3Q99687 375 aa14.93□□□□□ -0.02
CIITA-209ENST00000573309 KIAA0232Q92628 1395 aa14.93□□□□□ -0.02
CIITA-209ENST00000573309 BTBD11A6QL63 1104 aa14.93□□□□□ -0.02
CIITA-209ENST00000573309 HDGFL1Q5TGJ6 251 aa14.93□□□□□ -0.02
CIITA-209ENST00000573309 JARID2Q92833 1246 aaPredicted RBP14.93□□□□□ -0.02
CIITA-209ENST00000573309 STK31Q9BXU1 1019 aa14.93□□□□□ -0.02
CIITA-209ENST00000573309 KAT6BQ8WYB5 2073 aa14.93□□□□□ -0.02
CIITA-209ENST00000573309 EVA1CP58658 441 aa14.92□□□□□ -0.02
CIITA-209ENST00000573309 SNX21Q969T3 373 aa14.92□□□□□ -0.02
CIITA-209ENST00000573309 NPHP3Q7Z494 1330 aa14.92□□□□□ -0.02
CIITA-209ENST00000573309 RBM25P49756 843 aaKnown RBP14.92□□□□□ -0.02
CIITA-209ENST00000573309 PPP1R9BQ96SB3 815 aa14.92□□□□□ -0.02
CIITA-209ENST00000573309 AKAP12Q02952 1782 aa14.92□□□□□ -0.02
CIITA-209ENST00000573309 SMARCA5O60264 1052 aaPredicted RBP14.91□□□□□ -0.02
CIITA-209ENST00000573309 TAF7Q15545 349 aaPredicted RBP14.91□□□□□ -0.02
CIITA-209ENST00000573309 GBP4Q96PP9 640 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 HSP90AB1P08238 724 aaKnown RBP14.91□□□□□ -0.02
CIITA-209ENST00000573309 MYL6BP14649 208 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 NFATC2IPQ8NCF5 419 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 ANKRD26Q9UPS8 1709 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 ADGRB2O60241 1585 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 OFD1O75665 1012 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 CCDC173Q0VFZ6 552 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 PLEKHO1Q53GL0 409 aaPredicted RBP14.91□□□□□ -0.02
CIITA-209ENST00000573309 ZSCAN30Q86W11 494 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 KIF2CQ99661 725 aa14.91□□□□□ -0.02
CIITA-209ENST00000573309 CHD2O14647 1828 aaKnown RBP14.91□□□□□ -0.02
CIITA-209ENST00000573309 NASPP49321 788 aaPredicted RBP14.9□□□□□ -0.02
CIITA-209ENST00000573309 ARHGEF10O15013 1369 aa14.9□□□□□ -0.02
CIITA-209ENST00000573309 C16orf71Q8IYS4 520 aaPredicted RBP14.9□□□□□ -0.02
CIITA-209ENST00000573309 ZBTB40Q9NUA8 1239 aa14.9□□□□□ -0.02
CIITA-209ENST00000573309 PRDM4Q9UKN5 801 aa14.9□□□□□ -0.02
CIITA-209ENST00000573309 SSFA2P28290 1259 aa14.89□□□□□ -0.03
CIITA-209ENST00000573309 HDAC1Q13547 482 aaPredicted RBP14.89□□□□□ -0.03
CIITA-209ENST00000573309 SKOR2Q2VWA4 1001 aaPredicted RBP14.89□□□□□ -0.03
CIITA-209ENST00000573309 ALDH1L2Q3SY69 923 aa14.89□□□□□ -0.03
CIITA-209ENST00000573309 CHPF2Q9P2E5 772 aa14.89□□□□□ -0.03
CIITA-209ENST00000573309 ZBTB7BO15156 539 aaPredicted RBP14.89□□□□□ -0.03
CIITA-209ENST00000573309 TSHZ3Q63HK5 1081 aa14.89□□□□□ -0.03
CIITA-209ENST00000573309 PTCD1O75127 700 aaKnown RBP14.88□□□□□ -0.03
CIITA-209ENST00000573309 RBM42Q9BTD8 480 aaKnown RBP14.88□□□□□ -0.03
CIITA-209ENST00000573309 CIZ1Q9ULV3 898 aaPredicted RBP14.88□□□□□ -0.03
CIITA-209ENST00000573309 MAP3K5Q99683 1374 aa14.88□□□□□ -0.03
CIITA-209ENST00000573309 PROSER3Q2NL68 480 aa14.88□□□□□ -0.03
CIITA-209ENST00000573309 ERBB3P21860 1342 aa14.88□□□□□ -0.03
CIITA-209ENST00000573309 SYTL4Q96C24 671 aaPredicted RBP14.88□□□□□ -0.03
CIITA-209ENST00000573309 MST1RQ04912 1400 aa14.88□□□□□ -0.03
CIITA-209ENST00000573309 LARP1Q6PKG0 1096 aaKnown RBP14.87□□□□□ -0.03
CIITA-209ENST00000573309 TOPAZ1Q8N9V7 1692 aa14.87□□□□□ -0.03
CIITA-209ENST00000573309 FLIIQ13045 1269 aa14.87□□□□□ -0.03
CIITA-209ENST00000573309 SIRT2Q8IXJ6 389 aa14.87□□□□□ -0.03
CIITA-209ENST00000573309 CCDC9Q9Y3X0 531 aaKnown RBP14.87□□□□□ -0.03
CIITA-209ENST00000573309 FMN2Q9NZ56 1722 aa14.86□□□□□ -0.03
CIITA-209ENST00000573309 CT47B1P0C2W7 299 aaPredicted RBP14.86□□□□□ -0.03
CIITA-209ENST00000573309 TATP17735 454 aaPredicted RBP14.86□□□□□ -0.03
CIITA-209ENST00000573309 FAM13BQ9NYF5 915 aa14.86□□□□□ -0.03
CIITA-209ENST00000573309 R3HCC1Q9Y3T6 440 aaKnown RBP14.86□□□□□ -0.03
CIITA-209ENST00000573309 CRB1P82279 1406 aa14.86□□□□□ -0.03
CIITA-209ENST00000573309 OTUD7AQ8TE49 926 aaPredicted RBP14.86□□□□□ -0.03
CIITA-209ENST00000573309 API5Q9BZZ5 524 aaKnown RBP14.86□□□□□ -0.03
CIITA-209ENST00000573309 NRKQ7Z2Y5 1582 aa14.85□□□□□ -0.03
CIITA-209ENST00000573309 RNMTO43148 476 aaKnown RBP14.85□□□□□ -0.03
CIITA-209ENST00000573309 MSNP26038 577 aaKnown RBP14.85□□□□□ -0.03
CIITA-209ENST00000573309 EXOC6BQ9Y2D4 811 aa14.85□□□□□ -0.03
CIITA-209ENST00000573309 SPATA31A3Q5VYP0 1347 aa14.85□□□□□ -0.03
CIITA-209ENST00000573309 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.84□□□□□ -0.03
CIITA-209ENST00000573309 DDX49Q9Y6V7 483 aaKnown RBP14.84□□□□□ -0.03
CIITA-209ENST00000573309 KDRP35968 1356 aa14.84□□□□□ -0.03
CIITA-209ENST00000573309 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.84□□□□□ -0.03
CIITA-209ENST00000573309 BTG4Q9NY30 223 aa14.84□□□□□ -0.03
CIITA-209ENST00000573309 LMTK3Q96Q04 1460 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 PI4KAP2A4QPH2 592 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 NUCB1Q02818 461 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 CHD1LQ86WJ1 897 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 PI4KAP1Q8N8J0 262 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 DLG5Q8TDM6 1919 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 PXDNQ92626 1479 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 CCDC30Q5VVM6 783 aa14.83□□□□□ -0.04
CIITA-209ENST00000573309 K7ELQ4 463 aaPredicted RBP14.82□□□□□ -0.04
CIITA-209ENST00000573309 BAG4O95429 457 aaKnown RBP14.82□□□□□ -0.04
CIITA-209ENST00000573309 ARID3AQ99856 593 aa14.82□□□□□ -0.04
CIITA-209ENST00000573309 GOLGB1Q14789 3259 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms