RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 ARHGEF25Q86VW2 580 aa12.35□□□□□ -0.43
VPS53-206ENST00000570359 ARXQ96QS3 562 aa12.35□□□□□ -0.43
VPS53-206ENST00000570359 C19orf44Q9H6X5 657 aa12.35□□□□□ -0.43
VPS53-206ENST00000570359 LRRFIP2Q9Y608 721 aaKnown RBP12.35□□□□□ -0.43
VPS53-206ENST00000570359 ZNF142P52746 1687 aaPredicted RBP12.34□□□□□ -0.43
VPS53-206ENST00000570359 PIP4K2AP48426 406 aaPredicted RBP12.34□□□□□ -0.43
VPS53-206ENST00000570359 AIMP1Q12904 312 aaKnown RBP12.34□□□□□ -0.43
VPS53-206ENST00000570359 SLC39A6Q13433 755 aa12.34□□□□□ -0.43
VPS53-206ENST00000570359 PLEKHO1Q53GL0 409 aaPredicted RBP12.34□□□□□ -0.43
VPS53-206ENST00000570359 PLEKHM2Q8IWE5 1019 aa12.34□□□□□ -0.43
VPS53-206ENST00000570359 RBM42Q9BTD8 480 aaKnown RBP12.34□□□□□ -0.43
VPS53-206ENST00000570359 PNMA6EA0A0J9YXQ4 647 aa12.33□□□□□ -0.44
VPS53-206ENST00000570359 DCTPP1Q9H773 170 aa12.33□□□□□ -0.44
VPS53-206ENST00000570359 ATP10DQ9P241 1426 aa12.33□□□□□ -0.44
VPS53-206ENST00000570359 PXDNQ92626 1479 aa12.33□□□□□ -0.44
VPS53-206ENST00000570359 CCT4P50991 539 aaKnown RBP12.33□□□□□ -0.44
VPS53-206ENST00000570359 NFAT5O94916 1531 aa12.32□□□□□ -0.44
VPS53-206ENST00000570359 GNAI2P04899 355 aa12.32□□□□□ -0.44
VPS53-206ENST00000570359 BMP2KLQ5H9B9 411 aa12.32□□□□□ -0.44
VPS53-206ENST00000570359 IL1RAPL2Q9NP60 686 aa12.32□□□□□ -0.44
VPS53-206ENST00000570359 C1orf167Q5SNV9 1468 aa12.32□□□□□ -0.44
VPS53-206ENST00000570359 PI4KAP2A4QPH2 592 aa12.31□□□□□ -0.44
VPS53-206ENST00000570359 HTATSF1O43719 755 aaKnown RBP12.31□□□□□ -0.44
VPS53-206ENST00000570359 EIF4A1P60842 406 aaKnown RBP12.31□□□□□ -0.44
VPS53-206ENST00000570359 PROSER3Q2NL68 480 aa12.31□□□□□ -0.44
VPS53-206ENST00000570359 HSCBQ8IWL3 235 aa12.31□□□□□ -0.44
VPS53-206ENST00000570359 RPAP2Q8IXW5 612 aaPredicted RBP12.31□□□□□ -0.44
VPS53-206ENST00000570359 PI4KAP1Q8N8J0 262 aa12.31□□□□□ -0.44
VPS53-206ENST00000570359 RAPGEF4Q8WZA2 1011 aa12.31□□□□□ -0.44
VPS53-206ENST00000570359 HMMRO75330 724 aa12.3□□□□□ -0.44
VPS53-206ENST00000570359 UBTFL1P0CB47 393 aaPredicted RBP12.3□□□□□ -0.44
VPS53-206ENST00000570359 RNMTO43148 476 aaKnown RBP12.3□□□□□ -0.44
VPS53-206ENST00000570359 MAP4K4O95819 1239 aaPredicted RBP12.3□□□□□ -0.44
VPS53-206ENST00000570359 HSP90AA1P07900 732 aaKnown RBP12.3□□□□□ -0.44
VPS53-206ENST00000570359 MYL6BP14649 208 aa12.3□□□□□ -0.44
VPS53-206ENST00000570359 AKAP4Q5JQC9 854 aa12.3□□□□□ -0.44
VPS53-206ENST00000570359 DNAJC5Q9H3Z4 198 aa12.3□□□□□ -0.44
VPS53-206ENST00000570359 CDC45O75419 566 aa12.3□□□□□ -0.44
VPS53-206ENST00000570359 TTC22Q5TAA0 569 aa12.29□□□□□ -0.44
VPS53-206ENST00000570359 RILPL2Q969X0 211 aa12.29□□□□□ -0.44
VPS53-206ENST00000570359 RGPD5Q99666 1765 aa12.29□□□□□ -0.44
VPS53-206ENST00000570359 KIF24Q5T7B8 1368 aa12.29□□□□□ -0.44
VPS53-206ENST00000570359 HSP90AB1P08238 724 aaKnown RBP12.29□□□□□ -0.44
VPS53-206ENST00000570359 SDSP20132 328 aa12.29□□□□□ -0.44
VPS53-206ENST00000570359 USP35Q9P2H5 1018 aa12.29□□□□□ -0.44
VPS53-206ENST00000570359 TRIM6-TRIM34B2RNG4 842 aa12.28□□□□□ -0.44
VPS53-206ENST00000570359 NBPF7P0C2Y1 421 aaPredicted RBP12.28□□□□□ -0.44
VPS53-206ENST00000570359 NUTM1Q86Y26 1132 aa12.28□□□□□ -0.44
VPS53-206ENST00000570359 CD2BP2O95400 341 aaKnown RBP12.28□□□□□ -0.44
VPS53-206ENST00000570359 ERBB3P21860 1342 aa12.27□□□□□ -0.44
VPS53-206ENST00000570359 JARID2Q92833 1246 aaPredicted RBP12.27□□□□□ -0.44
VPS53-206ENST00000570359 SRCIN1Q9C0H9 1055 aa12.27□□□□□ -0.44
VPS53-206ENST00000570359 USP44Q9H0E7 712 aa12.27□□□□□ -0.44
VPS53-206ENST00000570359 GNAI3P08754 354 aa12.27□□□□□ -0.45
VPS53-206ENST00000570359 CWF19L2Q2TBE0 894 aaKnown RBP12.27□□□□□ -0.45
VPS53-206ENST00000570359 NFATC2IPQ8NCF5 419 aa12.27□□□□□ -0.45
VPS53-206ENST00000570359 SURF6O75683 361 aaKnown RBP12.26□□□□□ -0.45
VPS53-206ENST00000570359 OS9Q13438 667 aaPredicted RBP12.26□□□□□ -0.45
VPS53-206ENST00000570359 SRGAP3O43295 1099 aa12.26□□□□□ -0.45
VPS53-206ENST00000570359 AMOTQ4VCS5 1084 aa12.26□□□□□ -0.45
VPS53-206ENST00000570359 STRN4Q9NRL3 753 aa12.26□□□□□ -0.45
VPS53-206ENST00000570359 MAP3K2Q9Y2U5 619 aa12.26□□□□□ -0.45
VPS53-206ENST00000570359 FAM208AQ9UK61 1670 aaKnown RBP12.25□□□□□ -0.45
VPS53-206ENST00000570359 TATP17735 454 aaPredicted RBP12.25□□□□□ -0.45
VPS53-206ENST00000570359 PPP1R42Q7Z4L9 355 aa12.25□□□□□ -0.45
VPS53-206ENST00000570359 DNAAF4Q8WXU2 420 aa12.25□□□□□ -0.45
VPS53-206ENST00000570359 LRRCC1Q9C099 1032 aa12.25□□□□□ -0.45
VPS53-206ENST00000570359 ANO8Q9HCE9 1232 aaPredicted RBP12.25□□□□□ -0.45
VPS53-206ENST00000570359 CEMIPQ8WUJ3 1361 aa12.25□□□□□ -0.45
VPS53-206ENST00000570359 NOL8Q76FK4 1167 aaKnown RBP12.25□□□□□ -0.45
VPS53-206ENST00000570359 ZNF335Q9H4Z2 1342 aaPredicted RBP12.25□□□□□ -0.45
VPS53-206ENST00000570359 GZF1Q9H116 711 aaPredicted RBP12.24□□□□□ -0.45
VPS53-206ENST00000570359 C9orf78Q9NZ63 289 aaPredicted RBP12.24□□□□□ -0.45
VPS53-206ENST00000570359 LRRC37A3O60309 1634 aa12.24□□□□□ -0.45
VPS53-206ENST00000570359 MST1RQ04912 1400 aa12.24□□□□□ -0.45
VPS53-206ENST00000570359 PDE1AP54750 535 aa12.24□□□□□ -0.45
VPS53-206ENST00000570359 CADPS2Q86UW7 1296 aa12.24□□□□□ -0.45
VPS53-206ENST00000570359 PRDM11Q9NQV5 511 aa12.24□□□□□ -0.45
VPS53-206ENST00000570359 ATP8B2P98198 1209 aa12.23□□□□□ -0.45
VPS53-206ENST00000570359 NPHP3Q7Z494 1330 aa12.23□□□□□ -0.45
VPS53-206ENST00000570359 STRCP1A6NGW2 1772 aa12.23□□□□□ -0.45
VPS53-206ENST00000570359 GIGYF1O75420 1035 aaPredicted RBP12.23□□□□□ -0.45
VPS53-206ENST00000570359 PA2G4Q9UQ80 394 aaKnown RBP12.23□□□□□ -0.45
VPS53-206ENST00000570359 ZNF330Q9Y3S2 320 aaPredicted RBP12.23□□□□□ -0.45
VPS53-206ENST00000570359 MX1P20591 662 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 CASC1Q6TDU7 716 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 TOM1L2Q6ZVM7 507 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 KIF2CQ99661 725 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 ANTXR1Q9H6X2 564 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 DBF4Q9UBU7 674 aaPredicted RBP12.22□□□□□ -0.45
VPS53-206ENST00000570359 MED1Q15648 1581 aaPredicted RBP12.22□□□□□ -0.45
VPS53-206ENST00000570359 RBM25P49756 843 aaKnown RBP12.22□□□□□ -0.45
VPS53-206ENST00000570359 DDX54Q8TDD1 881 aaKnown RBP12.22□□□□□ -0.45
VPS53-206ENST00000570359 SIL1Q9H173 461 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 KAT6BQ8WYB5 2073 aa12.22□□□□□ -0.45
VPS53-206ENST00000570359 SOS1Q07889 1333 aaPredicted RBP12.22□□□□□ -0.45
VPS53-206ENST00000570359 BRINP3Q76B58 766 aa12.21□□□□□ -0.45
VPS53-206ENST00000570359 RIC3Q7Z5B4 369 aa12.21□□□□□ -0.45
VPS53-206ENST00000570359 UNC5CLQ8IV45 518 aa12.21□□□□□ -0.45
VPS53-206ENST00000570359 MEGF6O75095 1541 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms