RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 PLEKHG2Q9H7P9 1386 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 HMOX1P09601 288 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 FBLN1P23142 703 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 VARS2Q5ST30 1063 aaKnown RBP10.3□□□□□ -0.76
VPS39-213ENST00000570062 LMOD2Q6P5Q4 547 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 RTF1Q92541 710 aaKnown RBP10.3□□□□□ -0.76
VPS39-213ENST00000570062 IFT57Q9NWB7 429 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 BABAM1Q9NWV8 329 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 SPATA31A3Q5VYP0 1347 aa10.3□□□□□ -0.76
VPS39-213ENST00000570062 AMOTQ4VCS5 1084 aa10.29□□□□□ -0.76
VPS39-213ENST00000570062 BRINP3Q76B58 766 aa10.29□□□□□ -0.76
VPS39-213ENST00000570062 RRP7AQ9Y3A4 280 aaKnown RBP10.29□□□□□ -0.76
VPS39-213ENST00000570062 STK24Q9Y6E0 443 aa10.29□□□□□ -0.76
VPS39-213ENST00000570062 PIK3C2AO00443 1686 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 TNS3Q68CZ2 1445 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 NUTM2GQ5VZR2 741 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 GPR153Q6NV75 609 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 CFAP44Q96MT7 982 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 EYA1Q99502 592 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 SOS2Q07890 1332 aaPredicted RBP10.28□□□□□ -0.76
VPS39-213ENST00000570062 SLIT3O75094 1523 aa10.28□□□□□ -0.76
VPS39-213ENST00000570062 PDE3AQ14432 1141 aa10.27□□□□□ -0.77
VPS39-213ENST00000570062 FBXO22Q8NEZ5 403 aa10.27□□□□□ -0.77
VPS39-213ENST00000570062 MAP2P11137 1827 aaKnown RBP10.27□□□□□ -0.77
VPS39-213ENST00000570062 SOS1Q07889 1333 aaPredicted RBP10.27□□□□□ -0.77
VPS39-213ENST00000570062 IPO8O15397 1037 aaKnown RBP10.26□□□□□ -0.77
VPS39-213ENST00000570062 ALDH1L2Q3SY69 923 aa10.26□□□□□ -0.77
VPS39-213ENST00000570062 LRRC59Q96AG4 307 aaKnown RBP10.26□□□□□ -0.77
VPS39-213ENST00000570062 PHACTR3Q96KR7 559 aa10.26□□□□□ -0.77
VPS39-213ENST00000570062 ABCC6O95255 1503 aa10.26□□□□□ -0.77
VPS39-213ENST00000570062 RGPD8O14715 1765 aaPredicted RBP10.26□□□□□ -0.77
VPS39-213ENST00000570062 CPDO75976 1380 aa10.26□□□□□ -0.77
VPS39-213ENST00000570062 NFAT5O94916 1531 aa10.25□□□□□ -0.77
VPS39-213ENST00000570062 STK25O00506 426 aa10.25□□□□□ -0.77
VPS39-213ENST00000570062 ECM2O94769 699 aaPredicted RBP10.25□□□□□ -0.77
VPS39-213ENST00000570062 PLEKHO1Q53GL0 409 aaPredicted RBP10.25□□□□□ -0.77
VPS39-213ENST00000570062 CHMP4BQ9H444 224 aaKnown RBP10.25□□□□□ -0.77
VPS39-213ENST00000570062 PHRF1Q9P1Y6 1649 aaKnown RBP10.25□□□□□ -0.77
VPS39-213ENST00000570062 SENP3-EIF4A1A0A087X0R7 540 aa10.24□□□□□ -0.77
VPS39-213ENST00000570062 GNAT3A8MTJ3 354 aa10.24□□□□□ -0.77
VPS39-213ENST00000570062 TOM1O60784 492 aa10.24□□□□□ -0.77
VPS39-213ENST00000570062 ZNF853P0CG23 659 aa10.24□□□□□ -0.77
VPS39-213ENST00000570062 CANXP27824 592 aaKnown RBP10.24□□□□□ -0.77
VPS39-213ENST00000570062 XPCQ01831 940 aaPredicted RBP10.24□□□□□ -0.77
VPS39-213ENST00000570062 ANKRD24Q8TF21 1146 aa10.24□□□□□ -0.77
VPS39-213ENST00000570062 FANCIQ9NVI1 1328 aa10.24□□□□□ -0.77
VPS39-213ENST00000570062 PXDNQ92626 1479 aa10.23□□□□□ -0.77
VPS39-213ENST00000570062 RARSP54136 660 aaKnown RBP10.23□□□□□ -0.77
VPS39-213ENST00000570062 BRPF1P55201 1214 aaPredicted RBP10.23□□□□□ -0.77
VPS39-213ENST00000570062 ARSIQ5FYB1 569 aa10.23□□□□□ -0.77
VPS39-213ENST00000570062 ZNF687Q8N1G0 1237 aa10.23□□□□□ -0.77
VPS39-213ENST00000570062 MFRPQ9BY79 579 aa10.23□□□□□ -0.77
VPS39-213ENST00000570062 STRCP1A6NGW2 1772 aa10.22□□□□□ -0.77
VPS39-213ENST00000570062 MTHFSDQ2M296 383 aaKnown RBP10.22□□□□□ -0.77
VPS39-213ENST00000570062 POTEAQ6S8J7 498 aa10.22□□□□□ -0.77
VPS39-213ENST00000570062 AEBP1Q8IUX7 1158 aa10.22□□□□□ -0.77
VPS39-213ENST00000570062 KIF16BQ96L93 1317 aa10.22□□□□□ -0.77
VPS39-213ENST00000570062 TRPM3Q9HCF6 1732 aaPredicted RBP10.21□□□□□ -0.77
VPS39-213ENST00000570062 CHL1O00533 1208 aa10.21□□□□□ -0.77
VPS39-213ENST00000570062 EXOSC9Q06265 439 aaKnown RBP10.21□□□□□ -0.77
VPS39-213ENST00000570062 AKAP4Q5JQC9 854 aa10.21□□□□□ -0.77
VPS39-213ENST00000570062 RAPGEF4Q8WZA2 1011 aa10.21□□□□□ -0.77
VPS39-213ENST00000570062 ARHGAP45Q92619 1136 aa10.21□□□□□ -0.77
VPS39-213ENST00000570062 LTV1Q96GA3 475 aaPredicted RBP10.21□□□□□ -0.77
VPS39-213ENST00000570062 CCDC136Q96JN2 1154 aa10.21□□□□□ -0.77
VPS39-213ENST00000570062 KIAA0232Q92628 1395 aa10.21□□□□□ -0.78
VPS39-213ENST00000570062 ZBTB7CA1YPR0 619 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 HSP90AB1P08238 724 aaKnown RBP10.2□□□□□ -0.78
VPS39-213ENST00000570062 ZC3H6P61129 1189 aaKnown RBP10.2□□□□□ -0.78
VPS39-213ENST00000570062 NCAPD2Q15021 1401 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 C1orf141Q5JVX7 400 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 NBPF6Q5VWK0 638 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 ZKSCAN2Q63HK3 967 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 NBPF4Q96M43 638 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 SPG7Q9UQ90 795 aa10.2□□□□□ -0.78
VPS39-213ENST00000570062 LAS1LQ9Y4W2 734 aaKnown RBP10.2□□□□□ -0.78
VPS39-213ENST00000570062 RGPD1P0DJD0 1748 aa10.19□□□□□ -0.78
VPS39-213ENST00000570062 PEAK1Q9H792 1746 aa10.19□□□□□ -0.78
VPS39-213ENST00000570062 ALS2Q96Q42 1657 aa10.19□□□□□ -0.78
VPS39-213ENST00000570062 MAP3K5Q99683 1374 aa10.19□□□□□ -0.78
VPS39-213ENST00000570062 CSB-PGBD3P0DP91 1061 aa10.19□□□□□ -0.78
VPS39-213ENST00000570062 TATP17735 454 aaPredicted RBP10.19□□□□□ -0.78
VPS39-213ENST00000570062 TAF7Q15545 349 aaPredicted RBP10.19□□□□□ -0.78
VPS39-213ENST00000570062 IRX6P78412 446 aaPredicted RBP10.18□□□□□ -0.78
VPS39-213ENST00000570062 TWISTNBQ3B726 338 aaPredicted RBP10.18□□□□□ -0.78
VPS39-213ENST00000570062 TSR2Q969E8 191 aaKnown RBP10.18□□□□□ -0.78
VPS39-213ENST00000570062 PRDM11Q9NQV5 511 aa10.18□□□□□ -0.78
VPS39-213ENST00000570062 MBIPQ9NS73 344 aa10.18□□□□□ -0.78
VPS39-213ENST00000570062 SMC4Q9NTJ3 1288 aa10.18□□□□□ -0.78
VPS39-213ENST00000570062 OVOS2A0A0G2JMS6 1433 aa10.17□□□□□ -0.78
VPS39-213ENST00000570062 VAMP4O75379 141 aa10.17□□□□□ -0.78
VPS39-213ENST00000570062 BCAR3O75815 825 aa10.17□□□□□ -0.78
VPS39-213ENST00000570062 FTSJ3Q8IY81 847 aaKnown RBP10.17□□□□□ -0.78
VPS39-213ENST00000570062 KHSRPQ92945 711 aaKnown RBP eCLIP10.17□□□□□ -0.78
VPS39-213ENST00000570062 RNF166Q96A37 237 aaPredicted RBP10.17□□□□□ -0.78
VPS39-213ENST00000570062 NLRP2Q9NX02 1062 aa10.17□□□□□ -0.78
VPS39-213ENST00000570062 TSPYL4Q9UJ04 414 aa10.17□□□□□ -0.78
VPS39-213ENST00000570062 HOXB7P09629 217 aa10.16□□□□□ -0.78
VPS39-213ENST00000570062 EVA1CP58658 441 aa10.16□□□□□ -0.78
VPS39-213ENST00000570062 TEFQ10587 303 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms