RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 PTGER2P43116 358 aa17.5■□□□□ 0.39
CNOT1-220ENST00000569916 SIK1P57059 783 aa17.5■□□□□ 0.39
CNOT1-220ENST00000569916 CABP4P57796 275 aa17.5■□□□□ 0.39
CNOT1-220ENST00000569916 DDX10Q13206 875 aaKnown RBP17.5■□□□□ 0.39
CNOT1-220ENST00000569916 TFCP2L1Q9NZI6 479 aa17.5■□□□□ 0.39
CNOT1-220ENST00000569916 ATF5Q9Y2D1 282 aaPredicted RBP17.49■□□□□ 0.39
CNOT1-220ENST00000569916 SGIP1Q9BQI5 828 aa17.48■□□□□ 0.39
CNOT1-220ENST00000569916 RSPH6AQ9H0K4 717 aa17.48■□□□□ 0.39
CNOT1-220ENST00000569916 NUDCQ9Y266 331 aa17.48■□□□□ 0.39
CNOT1-220ENST00000569916 UBR2Q8IWV8 1755 aa17.48■□□□□ 0.39
CNOT1-220ENST00000569916 RNMTO43148 476 aaKnown RBP17.47■□□□□ 0.39
CNOT1-220ENST00000569916 HMGB2P26583 209 aaKnown RBP17.47■□□□□ 0.39
CNOT1-220ENST00000569916 ITPK1Q13572 414 aa17.47■□□□□ 0.39
CNOT1-220ENST00000569916 NFATC2IPQ8NCF5 419 aa17.47■□□□□ 0.39
CNOT1-220ENST00000569916 LINC00116Q8NCU8 138 aa17.47■□□□□ 0.39
CNOT1-220ENST00000569916 LGR6Q9HBX8 967 aa17.47■□□□□ 0.39
CNOT1-220ENST00000569916 PPP1R1BQ9UD71 204 aaPredicted RBP17.47■□□□□ 0.39
CNOT1-220ENST00000569916 MAP3K5Q99683 1374 aa17.46■□□□□ 0.39
CNOT1-220ENST00000569916 PRKAR2BP31323 418 aa17.46■□□□□ 0.39
CNOT1-220ENST00000569916 ATP6V1AP38606 617 aa17.46■□□□□ 0.39
CNOT1-220ENST00000569916 SLC16A10Q8TF71 515 aa17.46■□□□□ 0.39
CNOT1-220ENST00000569916 SLC4A9Q96Q91 983 aa17.46■□□□□ 0.39
CNOT1-220ENST00000569916 SLC52A2Q9HAB3 445 aa17.46■□□□□ 0.39
CNOT1-220ENST00000569916 U2AF1L5P0DN76 240 aaPredicted RBP17.45■□□□□ 0.38
CNOT1-220ENST00000569916 U2AF1Q01081 240 aaKnown RBP eCLIP17.45■□□□□ 0.38
CNOT1-220ENST00000569916 COL23A1Q86Y22 540 aaPredicted RBP17.45■□□□□ 0.38
CNOT1-220ENST00000569916 GAS2L2Q8NHY3 880 aa17.45■□□□□ 0.38
CNOT1-220ENST00000569916 KCPQ6ZWJ8 1503 aa17.44■□□□□ 0.38
CNOT1-220ENST00000569916 RALBP1Q15311 655 aa17.44■□□□□ 0.38
CNOT1-220ENST00000569916 AMIGO3Q86WK7 504 aa17.44■□□□□ 0.38
CNOT1-220ENST00000569916 PHACTR3Q96KR7 559 aa17.44■□□□□ 0.38
CNOT1-220ENST00000569916 AK7Q96M32 723 aa17.44■□□□□ 0.38
CNOT1-220ENST00000569916 RBM42Q9BTD8 480 aaKnown RBP17.44■□□□□ 0.38
CNOT1-220ENST00000569916 DLG5Q8TDM6 1919 aa17.44■□□□□ 0.38
CNOT1-220ENST00000569916 MYH14Q7Z406 1995 aaKnown RBP17.44■□□□□ 0.38
CNOT1-220ENST00000569916 C4AP0C0L4 1744 aa17.43■□□□□ 0.38
CNOT1-220ENST00000569916 FCHSD2O94868 740 aa17.42■□□□□ 0.38
CNOT1-220ENST00000569916 GNAT3A8MTJ3 354 aa17.41■□□□□ 0.38
CNOT1-220ENST00000569916 FLAD1Q8NFF5 587 aa17.41■□□□□ 0.38
CNOT1-220ENST00000569916 CEMIPQ8WUJ3 1361 aa17.4■□□□□ 0.38
CNOT1-220ENST00000569916 MSH5O43196 834 aa17.4■□□□□ 0.38
CNOT1-220ENST00000569916 PTCD1O75127 700 aaKnown RBP17.4■□□□□ 0.38
CNOT1-220ENST00000569916 SSFA2P28290 1259 aa17.4■□□□□ 0.38
CNOT1-220ENST00000569916 SMIM5Q71RC9 77 aa17.4■□□□□ 0.38
CNOT1-220ENST00000569916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.39■□□□□ 0.37
CNOT1-220ENST00000569916 GNPATO15228 680 aa17.39■□□□□ 0.37
CNOT1-220ENST00000569916 PHF14O94880 888 aa17.39■□□□□ 0.37
CNOT1-220ENST00000569916 IL17REQ8NFR9 667 aa17.39■□□□□ 0.37
CNOT1-220ENST00000569916 ARXQ96QS3 562 aa17.39■□□□□ 0.37
CNOT1-220ENST00000569916 MYBBP1AQ9BQG0 1328 aaKnown RBP17.39■□□□□ 0.37
CNOT1-220ENST00000569916 CNTNAP4Q9C0A0 1308 aa17.39■□□□□ 0.37
CNOT1-220ENST00000569916 SLC39A6Q13433 755 aa17.38■□□□□ 0.37
CNOT1-220ENST00000569916 POLD1P28340 1107 aa17.37■□□□□ 0.37
CNOT1-220ENST00000569916 RC3H1Q5TC82 1133 aaKnown RBP17.37■□□□□ 0.37
CNOT1-220ENST00000569916 MSL1Q68DK7 614 aa17.37■□□□□ 0.37
CNOT1-220ENST00000569916 FHDC1Q9C0D6 1143 aaPredicted RBP17.37■□□□□ 0.37
CNOT1-220ENST00000569916 TEFQ10587 303 aa17.35■□□□□ 0.37
CNOT1-220ENST00000569916 PLEKHF1Q96S99 279 aa17.35■□□□□ 0.37
CNOT1-220ENST00000569916 CRKLP46109 303 aaKnown RBP17.34■□□□□ 0.37
CNOT1-220ENST00000569916 SYT17Q9BSW7 474 aa17.34■□□□□ 0.37
CNOT1-220ENST00000569916 RTCBQ9Y3I0 505 aaKnown RBP17.34■□□□□ 0.37
CNOT1-220ENST00000569916 RPS6KA4O75676 772 aa17.33■□□□□ 0.36
CNOT1-220ENST00000569916 DNAJC10Q8IXB1 793 aa17.33■□□□□ 0.36
CNOT1-220ENST00000569916 PRKRIP1Q9H875 184 aaPredicted RBP17.33■□□□□ 0.36
CNOT1-220ENST00000569916 ADRA2BP18089 450 aa17.32■□□□□ 0.36
CNOT1-220ENST00000569916 MCM10Q7L590 875 aa17.32■□□□□ 0.36
CNOT1-220ENST00000569916 TTC5Q8N0Z6 440 aa17.32■□□□□ 0.36
CNOT1-220ENST00000569916 KDM3BQ7LBC6 1761 aa17.32■□□□□ 0.36
CNOT1-220ENST00000569916 HTATSF1O43719 755 aaKnown RBP17.31■□□□□ 0.36
CNOT1-220ENST00000569916 TRAPPC3LQ5T215 181 aa17.31■□□□□ 0.36
CNOT1-220ENST00000569916 ZNF790Q6PG37 636 aa17.31■□□□□ 0.36
CNOT1-220ENST00000569916 VSIG10Q8N0Z9 540 aa17.31■□□□□ 0.36
CNOT1-220ENST00000569916 RTF1Q92541 710 aaKnown RBP17.31■□□□□ 0.36
CNOT1-220ENST00000569916 NEFMP07197 916 aa17.3■□□□□ 0.36
CNOT1-220ENST00000569916 CYP19A1P11511 503 aaPredicted RBP17.3■□□□□ 0.36
CNOT1-220ENST00000569916 DCTN1Q14203 1278 aa17.3■□□□□ 0.36
CNOT1-220ENST00000569916 INTS5Q6P9B9 1019 aaKnown RBP17.3■□□□□ 0.36
CNOT1-220ENST00000569916 ARHGEF1Q92888 912 aaKnown RBP17.3■□□□□ 0.36
CNOT1-220ENST00000569916 ZNF496Q96IT1 587 aaPredicted RBP17.3■□□□□ 0.36
CNOT1-220ENST00000569916 HEG1Q9ULI3 1381 aa17.29■□□□□ 0.36
CNOT1-220ENST00000569916 MAPK8IP3Q9UPT6 1336 aa17.29■□□□□ 0.36
CNOT1-220ENST00000569916 ZNF316A6NFI3 1004 aaPredicted RBP17.29■□□□□ 0.36
CNOT1-220ENST00000569916 KLHL34Q8N239 644 aa17.29■□□□□ 0.36
CNOT1-220ENST00000569916 CCDC87Q9NVE4 849 aa17.29■□□□□ 0.36
CNOT1-220ENST00000569916 KIF13BQ9NQT8 1826 aa17.28■□□□□ 0.36
CNOT1-220ENST00000569916 LAMB4A4D0S4 1761 aa17.28■□□□□ 0.36
CNOT1-220ENST00000569916 BTBD11A6QL63 1104 aa17.28■□□□□ 0.36
CNOT1-220ENST00000569916 NFE2L2Q16236 605 aa17.28■□□□□ 0.36
CNOT1-220ENST00000569916 PNNQ9H307 717 aaKnown RBP17.28■□□□□ 0.36
CNOT1-220ENST00000569916 SOS1Q07889 1333 aaPredicted RBP17.27■□□□□ 0.36
CNOT1-220ENST00000569916 KCNQ3O43525 872 aa17.27■□□□□ 0.36
CNOT1-220ENST00000569916 ZBTB1Q9Y2K1 713 aa17.27■□□□□ 0.36
CNOT1-220ENST00000569916 SCN7AQ01118 1682 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 GYS1P13807 737 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 RFC4P35249 363 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 NLGN2Q8NFZ4 835 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 FMNL2Q96PY5 1086 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 KIAA1551Q9HCM1 1747 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 COL15A1P39059 1388 aa17.26■□□□□ 0.35
CNOT1-220ENST00000569916 USP42Q9H9J4 1324 aaKnown RBP17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms