RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 RGPD4Q7Z3J3 1758 aa12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 KDM6AO15550 1401 aaPredicted RBP12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 HSP90AB1P08238 724 aaKnown RBP12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 DCAF5Q96JK2 942 aa12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 TFCP2L1Q9NZI6 479 aa12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 ZNF219Q9P2Y4 722 aaPredicted RBP12.05□□□□□ -0.48
GTF3C1-210ENST00000569394 LY75O60449 1722 aa12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 PTCD1O75127 700 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 ATP6V1AP38606 617 aa12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 RALBP1Q15311 655 aa12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 AKAP4Q5JQC9 854 aa12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 RSPH6AQ9H0K4 717 aa12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 ATG3Q9NT62 314 aa12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 VIRMAQ69YN4 1812 aaKnown RBP12.04□□□□□ -0.48
GTF3C1-210ENST00000569394 RNMTO43148 476 aaKnown RBP12.03□□□□□ -0.48
GTF3C1-210ENST00000569394 PHF14O94880 888 aa12.03□□□□□ -0.48
GTF3C1-210ENST00000569394 SLC39A6Q13433 755 aa12.03□□□□□ -0.48
GTF3C1-210ENST00000569394 SLC27A3Q5K4L6 730 aa12.03□□□□□ -0.48
GTF3C1-210ENST00000569394 SMARCC1Q92922 1105 aaPredicted RBP12.03□□□□□ -0.48
GTF3C1-210ENST00000569394 SENP3-EIF4A1A0A087X0R7 540 aa12.02□□□□□ -0.49
GTF3C1-210ENST00000569394 ERVV-2B6SEH9 535 aa12.02□□□□□ -0.49
GTF3C1-210ENST00000569394 DCTN1Q14203 1278 aa12.02□□□□□ -0.49
GTF3C1-210ENST00000569394 SCN11AQ9UI33 1791 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 LOC102724428A0A0B4J2F2 783 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 SIK1P57059 783 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 ITPK1Q13572 414 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 CCDC146Q8IYE0 955 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 KLHL34Q8N239 644 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 LINC00116Q8NCU8 138 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 AKT1S1Q96B36 256 aa12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 PPP1R1BQ9UD71 204 aaPredicted RBP12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 MYBBP1AQ9BQG0 1328 aaKnown RBP12.01□□□□□ -0.49
GTF3C1-210ENST00000569394 C5P01031 1676 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 GNAT3A8MTJ3 354 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 MSL1Q68DK7 614 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 MCM10Q7L590 875 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 IL17REQ8NFR9 667 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 GAS2L2Q8NHY3 880 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 AK7Q96M32 723 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 PRKRIP1Q9H875 184 aaPredicted RBP12□□□□□ -0.49
GTF3C1-210ENST00000569394 SLC52A2Q9HAB3 445 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 PAPPAQ13219 1627 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 TUBGCP6Q96RT7 1819 aa12□□□□□ -0.49
GTF3C1-210ENST00000569394 FCHSD2O94868 740 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 NEFMP07197 916 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 NEUROD2Q15784 382 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 AMIGO3Q86WK7 504 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 SLC4A9Q96Q91 983 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 SPON1Q9HCB6 807 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 PNPLA7Q6ZV29 1317 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 MAP3K5Q99683 1374 aa11.99□□□□□ -0.49
GTF3C1-210ENST00000569394 TAF1LQ8IZX4 1826 aa11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 MAPK8IP3Q9UPT6 1336 aa11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 TEFQ10587 303 aa11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 CCDC184Q52MB2 194 aa11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 COL23A1Q86Y22 540 aaPredicted RBP11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 RTF1Q92541 710 aaKnown RBP11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 RRP7AQ9Y3A4 280 aaKnown RBP11.98□□□□□ -0.49
GTF3C1-210ENST00000569394 CASZ1Q86V15 1759 aa11.97□□□□□ -0.49
GTF3C1-210ENST00000569394 GNPATO15228 680 aa11.97□□□□□ -0.49
GTF3C1-210ENST00000569394 WDR43Q15061 677 aaKnown RBP eCLIP11.97□□□□□ -0.49
GTF3C1-210ENST00000569394 THUMPD2Q9BTF0 503 aaKnown RBP11.97□□□□□ -0.49
GTF3C1-210ENST00000569394 MIS18AQ9NYP9 233 aa11.97□□□□□ -0.49
GTF3C1-210ENST00000569394 C4BP0C0L5 1744 aa11.97□□□□□ -0.49
GTF3C1-210ENST00000569394 KCNQ3O43525 872 aa11.96□□□□□ -0.49
GTF3C1-210ENST00000569394 TTC5Q8N0Z6 440 aa11.96□□□□□ -0.49
GTF3C1-210ENST00000569394 BTBD11A6QL63 1104 aa11.95□□□□□ -0.5
GTF3C1-210ENST00000569394 ANP32CO43423 234 aa11.95□□□□□ -0.5
GTF3C1-210ENST00000569394 DNAJC10Q8IXB1 793 aa11.95□□□□□ -0.5
GTF3C1-210ENST00000569394 PLEKHG2Q9H7P9 1386 aa11.94□□□□□ -0.5
GTF3C1-210ENST00000569394 DLG5Q8TDM6 1919 aa11.94□□□□□ -0.5
GTF3C1-210ENST00000569394 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.94□□□□□ -0.5
GTF3C1-210ENST00000569394 PLEKHF1Q96S99 279 aa11.94□□□□□ -0.5
GTF3C1-210ENST00000569394 MTFR1LQ9H019 292 aa11.94□□□□□ -0.5
GTF3C1-210ENST00000569394 ADAMTS8Q9UP79 889 aa11.94□□□□□ -0.5
GTF3C1-210ENST00000569394 PTGER2P43116 358 aa11.93□□□□□ -0.5
GTF3C1-210ENST00000569394 RIPK4P57078 832 aa11.93□□□□□ -0.5
GTF3C1-210ENST00000569394 ARXQ96QS3 562 aa11.93□□□□□ -0.5
GTF3C1-210ENST00000569394 ZNF330Q9Y3S2 320 aaPredicted RBP11.93□□□□□ -0.5
GTF3C1-210ENST00000569394 CRKLP46109 303 aaKnown RBP11.92□□□□□ -0.5
GTF3C1-210ENST00000569394 PIP4K2AP48426 406 aaPredicted RBP11.92□□□□□ -0.5
GTF3C1-210ENST00000569394 NFE2L2Q16236 605 aa11.92□□□□□ -0.5
GTF3C1-210ENST00000569394 PNNQ9H307 717 aaKnown RBP11.92□□□□□ -0.5
GTF3C1-210ENST00000569394 RTCBQ9Y3I0 505 aaKnown RBP11.92□□□□□ -0.5
GTF3C1-210ENST00000569394 UBR3Q6ZT12 1888 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 PRAMEF22A3QJZ6 481 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 YY1P25490 414 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 CANXP27824 592 aaKnown RBP11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 POLD1P28340 1107 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 MKRN4PQ13434 485 aaPredicted RBP11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 TRAPPC3LQ5T215 181 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 ZNF790Q6PG37 636 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 ZNF496Q96IT1 587 aaPredicted RBP11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 LAS1LQ9Y4W2 734 aaKnown RBP11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 TJP1Q07157 1748 aa11.91□□□□□ -0.5
GTF3C1-210ENST00000569394 ARHGEF1Q92888 912 aaKnown RBP11.9□□□□□ -0.5
GTF3C1-210ENST00000569394 FHDC1Q9C0D6 1143 aaPredicted RBP11.9□□□□□ -0.5
GTF3C1-210ENST00000569394 MRS2Q9HD23 443 aa11.9□□□□□ -0.5
GTF3C1-210ENST00000569394 SRP68Q9UHB9 627 aaKnown RBP11.9□□□□□ -0.5
GTF3C1-210ENST00000569394 WWC3Q9ULE0 1092 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms