RNA–Protein interactions for RNA: ENST00000568586.5

RAB40C-211, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 648 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-211ENST00000568586 ARXQ96QS3 562 aa39.56■■■■□ 3.92
RAB40C-211ENST00000568586 ZNF831Q5JPB2 1677 aa39.55■■■■□ 3.92
RAB40C-211ENST00000568586 MTHFSDQ2M296 383 aaKnown RBP39.55■■■■□ 3.92
RAB40C-211ENST00000568586 ATP6V1AP38606 617 aa39.54■■■■□ 3.92
RAB40C-211ENST00000568586 NFATC2IPQ8NCF5 419 aa39.54■■■■□ 3.92
RAB40C-211ENST00000568586 SLC4A9Q96Q91 983 aa39.53■■■■□ 3.92
RAB40C-211ENST00000568586 SCN11AQ9UI33 1791 aa39.53■■■■□ 3.92
RAB40C-211ENST00000568586 MAP3K5Q99683 1374 aa39.52■■■■□ 3.92
RAB40C-211ENST00000568586 U2SURPO15042 1029 aaKnown RBP39.52■■■■□ 3.92
RAB40C-211ENST00000568586 AK7Q96M32 723 aa39.52■■■■□ 3.92
RAB40C-211ENST00000568586 AMIGO3Q86WK7 504 aa39.5■■■■□ 3.91
RAB40C-211ENST00000568586 SYT17Q9BSW7 474 aa39.5■■■■□ 3.91
RAB40C-211ENST00000568586 FHDC1Q9C0D6 1143 aaPredicted RBP39.5■■■■□ 3.91
RAB40C-211ENST00000568586 LGR6Q9HBX8 967 aa39.49■■■■□ 3.91
RAB40C-211ENST00000568586 ADAMTS7Q9UKP4 1686 aa39.48■■■■□ 3.91
RAB40C-211ENST00000568586 UBR3Q6ZT12 1888 aa39.48■■■■□ 3.91
RAB40C-211ENST00000568586 POLD1P28340 1107 aa39.48■■■■□ 3.91
RAB40C-211ENST00000568586 RNMTO43148 476 aaKnown RBP39.47■■■■□ 3.91
RAB40C-211ENST00000568586 SSFA2P28290 1259 aa39.47■■■■□ 3.91
RAB40C-211ENST00000568586 SLC52A2Q9HAB3 445 aa39.47■■■■□ 3.91
RAB40C-211ENST00000568586 MRC1P22897 1456 aa39.47■■■■□ 3.91
RAB40C-211ENST00000568586 NUDCQ9Y266 331 aa39.45■■■■□ 3.91
RAB40C-211ENST00000568586 MSH5O43196 834 aa39.44■■■■□ 3.9
RAB40C-211ENST00000568586 RBM42Q9BTD8 480 aaKnown RBP39.44■■■■□ 3.9
RAB40C-211ENST00000568586 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP39.43■■■■□ 3.9
RAB40C-211ENST00000568586 RC3H1Q5TC82 1133 aaKnown RBP39.43■■■■□ 3.9
RAB40C-211ENST00000568586 RSPH6AQ9H0K4 717 aa39.43■■■■□ 3.9
RAB40C-211ENST00000568586 GAS2L2Q8NHY3 880 aa39.41■■■■□ 3.9
RAB40C-211ENST00000568586 CNTNAP4Q9C0A0 1308 aa39.39■■■■□ 3.9
RAB40C-211ENST00000568586 GNPATO15228 680 aa39.38■■■■□ 3.89
RAB40C-211ENST00000568586 COL5A3P25940 1745 aaPredicted RBP39.37■■■■□ 3.89
RAB40C-211ENST00000568586 PTCD1O75127 700 aaKnown RBP39.37■■■■□ 3.89
RAB40C-211ENST00000568586 CICQ96RK0 1608 aaPredicted RBP39.36■■■■□ 3.89
RAB40C-211ENST00000568586 PRKAR2BP31323 418 aa39.36■■■■□ 3.89
RAB40C-211ENST00000568586 SMIM5Q71RC9 77 aa39.36■■■■□ 3.89
RAB40C-211ENST00000568586 PHACTR3Q96KR7 559 aa39.36■■■■□ 3.89
RAB40C-211ENST00000568586 FCHSD2O94868 740 aa39.35■■■■□ 3.89
RAB40C-211ENST00000568586 GNAT3A8MTJ3 354 aa39.34■■■■□ 3.89
RAB40C-211ENST00000568586 PHF14O94880 888 aa39.34■■■■□ 3.89
RAB40C-211ENST00000568586 DCAF8L1A6NGE4 600 aa39.33■■■■□ 3.89
RAB40C-211ENST00000568586 U2AF1L5P0DN76 240 aaPredicted RBP39.33■■■■□ 3.89
RAB40C-211ENST00000568586 U2AF1Q01081 240 aaKnown RBP eCLIP39.33■■■■□ 3.89
RAB40C-211ENST00000568586 MSL1Q68DK7 614 aa39.33■■■■□ 3.89
RAB40C-211ENST00000568586 VIRMAQ69YN4 1812 aaKnown RBP39.33■■■■□ 3.89
RAB40C-211ENST00000568586 IL17REQ8NFR9 667 aa39.32■■■■□ 3.89
RAB40C-211ENST00000568586 RTCBQ9Y3I0 505 aaKnown RBP39.31■■■■□ 3.88
RAB40C-211ENST00000568586 RPS6KA4O75676 772 aa39.3■■■■□ 3.88
RAB40C-211ENST00000568586 ADRA2BP18089 450 aa39.3■■■■□ 3.88
RAB40C-211ENST00000568586 CEMIPQ8WUJ3 1361 aa39.28■■■■□ 3.88
RAB40C-211ENST00000568586 DDX10Q13206 875 aaKnown RBP39.27■■■■□ 3.88
RAB40C-211ENST00000568586 RALBP1Q15311 655 aa39.27■■■■□ 3.88
RAB40C-211ENST00000568586 TRAPPC3LQ5T215 181 aa39.27■■■■□ 3.88
RAB40C-211ENST00000568586 MYH14Q7Z406 1995 aaKnown RBP39.27■■■■□ 3.88
RAB40C-211ENST00000568586 TJP1Q07157 1748 aa39.26■■■■□ 3.88
RAB40C-211ENST00000568586 UTRNP46939 3433 aa39.26■■■■□ 3.88
RAB40C-211ENST00000568586 KCPQ6ZWJ8 1503 aa39.26■■■■□ 3.88
RAB40C-211ENST00000568586 SLC39A6Q13433 755 aa39.26■■■■□ 3.88
RAB40C-211ENST00000568586 CRKLP46109 303 aaKnown RBP39.24■■■■□ 3.87
RAB40C-211ENST00000568586 VSIG10Q8N0Z9 540 aa39.23■■■■□ 3.87
RAB40C-211ENST00000568586 ARHGEF1Q92888 912 aaKnown RBP39.23■■■■□ 3.87
RAB40C-211ENST00000568586 TEFQ10587 303 aa39.2■■■■□ 3.87
RAB40C-211ENST00000568586 INTS5Q6P9B9 1019 aaKnown RBP39.2■■■■□ 3.87
RAB40C-211ENST00000568586 DNAJC10Q8IXB1 793 aa39.2■■■■□ 3.87
RAB40C-211ENST00000568586 CD2APQ9Y5K6 639 aa39.2■■■■□ 3.87
RAB40C-211ENST00000568586 SIPA1L3O60292 1781 aaPredicted RBP39.18■■■■□ 3.86
RAB40C-211ENST00000568586 UBR2Q8IWV8 1755 aa39.18■■■■□ 3.86
RAB40C-211ENST00000568586 NLGN2Q8NFZ4 835 aa39.18■■■■□ 3.86
RAB40C-211ENST00000568586 CYP19A1P11511 503 aaPredicted RBP39.17■■■■□ 3.86
RAB40C-211ENST00000568586 KLHL34Q8N239 644 aa39.17■■■■□ 3.86
RAB40C-211ENST00000568586 ZEB1P37275 1124 aaPredicted RBP39.16■■■■□ 3.86
RAB40C-211ENST00000568586 NLGN1Q8N2Q7 840 aa39.16■■■■□ 3.86
RAB40C-211ENST00000568586 HTATSF1O43719 755 aaKnown RBP39.15■■■■□ 3.86
RAB40C-211ENST00000568586 ZNF790Q6PG37 636 aa39.15■■■■□ 3.86
RAB40C-211ENST00000568586 GOLGB1Q14789 3259 aaKnown RBP39.15■■■■□ 3.86
RAB40C-211ENST00000568586 RFC4P35249 363 aa39.14■■■■□ 3.86
RAB40C-211ENST00000568586 CCDC87Q9NVE4 849 aa39.14■■■■□ 3.86
RAB40C-211ENST00000568586 TTC5Q8N0Z6 440 aa39.13■■■■□ 3.85
RAB40C-211ENST00000568586 GYS1P13807 737 aa39.12■■■■□ 3.85
RAB40C-211ENST00000568586 PLEKHF1Q96S99 279 aa39.12■■■■□ 3.85
RAB40C-211ENST00000568586 ZNF496Q96IT1 587 aaPredicted RBP39.1■■■■□ 3.85
RAB40C-211ENST00000568586 C4AP0C0L4 1744 aa39.09■■■■□ 3.85
RAB40C-211ENST00000568586 MMP10P09238 476 aa39.08■■■■□ 3.85
RAB40C-211ENST00000568586 RTF1Q92541 710 aaKnown RBP39.08■■■■□ 3.85
RAB40C-211ENST00000568586 SOS1Q07889 1333 aaPredicted RBP39.08■■■■□ 3.85
RAB40C-211ENST00000568586 MYBBP1AQ9BQG0 1328 aaKnown RBP39.07■■■■□ 3.84
RAB40C-211ENST00000568586 HEG1Q9ULI3 1381 aa39.07■■■■□ 3.84
RAB40C-211ENST00000568586 USP42Q9H9J4 1324 aaKnown RBP39.06■■■■□ 3.84
RAB40C-211ENST00000568586 YY1P25490 414 aa39.05■■■■□ 3.84
RAB40C-211ENST00000568586 MCM10Q7L590 875 aa39.05■■■■□ 3.84
RAB40C-211ENST00000568586 TEX13AQ9BXU3 409 aaPredicted RBP39.05■■■■□ 3.84
RAB40C-211ENST00000568586 PNNQ9H307 717 aaKnown RBP39.05■■■■□ 3.84
RAB40C-211ENST00000568586 BTBD11A6QL63 1104 aa39.04■■■■□ 3.84
RAB40C-211ENST00000568586 GPR162Q16538 588 aa39.04■■■■□ 3.84
RAB40C-211ENST00000568586 STARD3NLO95772 234 aa39.03■■■■□ 3.84
RAB40C-211ENST00000568586 NEFMP07197 916 aa39.03■■■■□ 3.84
RAB40C-211ENST00000568586 FMNL2Q96PY5 1086 aa39.03■■■■□ 3.84
RAB40C-211ENST00000568586 ZBTB1Q9Y2K1 713 aa39.02■■■■□ 3.84
RAB40C-211ENST00000568586 SRP68Q9UHB9 627 aaKnown RBP39.01■■■■□ 3.84
RAB40C-211ENST00000568586 KCNQ3O43525 872 aa38.99■■■■□ 3.83
RAB40C-211ENST00000568586 DCTN1Q14203 1278 aa38.99■■■■□ 3.83
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms