RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SMARCC1Q92922 1105 aaPredicted RBP20.22■□□□□ 0.83
VPS39-210ENST00000568357 CFAP53Q96M91 514 aa20.22■□□□□ 0.83
VPS39-210ENST00000568357 KDM6AO15550 1401 aaPredicted RBP20.21■□□□□ 0.83
VPS39-210ENST00000568357 MTHFSDQ2M296 383 aaKnown RBP20.21■□□□□ 0.83
VPS39-210ENST00000568357 ATG3Q9NT62 314 aa20.2■□□□□ 0.82
VPS39-210ENST00000568357 CABP4P57796 275 aa20.19■□□□□ 0.82
VPS39-210ENST00000568357 AKAP4Q5JQC9 854 aa20.19■□□□□ 0.82
VPS39-210ENST00000568357 NLGN2Q8NFZ4 835 aa20.19■□□□□ 0.82
VPS39-210ENST00000568357 LY75O60449 1722 aa20.19■□□□□ 0.82
VPS39-210ENST00000568357 LGR6Q9HBX8 967 aa20.18■□□□□ 0.82
VPS39-210ENST00000568357 TFCP2L1Q9NZI6 479 aa20.18■□□□□ 0.82
VPS39-210ENST00000568357 LOC102724428A0A0B4J2F2 783 aa20.17■□□□□ 0.82
VPS39-210ENST00000568357 SIK1P57059 783 aa20.17■□□□□ 0.82
VPS39-210ENST00000568357 NFATC2IPQ8NCF5 419 aa20.17■□□□□ 0.82
VPS39-210ENST00000568357 ITGB4P16144 1822 aa20.17■□□□□ 0.82
VPS39-210ENST00000568357 ATP10DQ9P241 1426 aa20.17■□□□□ 0.82
VPS39-210ENST00000568357 NUDCQ9Y266 331 aa20.16■□□□□ 0.82
VPS39-210ENST00000568357 PNPLA7Q6ZV29 1317 aa20.16■□□□□ 0.82
VPS39-210ENST00000568357 YBX3P16989 372 aaKnown RBP eCLIP20.15■□□□□ 0.82
VPS39-210ENST00000568357 PHACTR3Q96KR7 559 aa20.15■□□□□ 0.82
VPS39-210ENST00000568357 RSPH6AQ9H0K4 717 aa20.15■□□□□ 0.82
VPS39-210ENST00000568357 U2AF1L5P0DN76 240 aaPredicted RBP20.14■□□□□ 0.81
VPS39-210ENST00000568357 U2AF1Q01081 240 aaKnown RBP eCLIP20.14■□□□□ 0.81
VPS39-210ENST00000568357 ITPK1Q13572 414 aa20.14■□□□□ 0.81
VPS39-210ENST00000568357 RNMTO43148 476 aaKnown RBP20.13■□□□□ 0.81
VPS39-210ENST00000568357 POLD1P28340 1107 aa20.13■□□□□ 0.81
VPS39-210ENST00000568357 PRKAR2BP31323 418 aa20.13■□□□□ 0.81
VPS39-210ENST00000568357 ATP6V1AP38606 617 aa20.13■□□□□ 0.81
VPS39-210ENST00000568357 LINC00116Q8NCU8 138 aa20.13■□□□□ 0.81
VPS39-210ENST00000568357 SLC4A9Q96Q91 983 aa20.13■□□□□ 0.81
VPS39-210ENST00000568357 RALBP1Q15311 655 aa20.12■□□□□ 0.81
VPS39-210ENST00000568357 COL23A1Q86Y22 540 aaPredicted RBP20.12■□□□□ 0.81
VPS39-210ENST00000568357 FCHSD2O94868 740 aa20.11■□□□□ 0.81
VPS39-210ENST00000568357 HMGB2P26583 209 aaKnown RBP20.11■□□□□ 0.81
VPS39-210ENST00000568357 RBM42Q9BTD8 480 aaKnown RBP20.11■□□□□ 0.81
VPS39-210ENST00000568357 SLC52A2Q9HAB3 445 aa20.11■□□□□ 0.81
VPS39-210ENST00000568357 AMIGO3Q86WK7 504 aa20.1■□□□□ 0.81
VPS39-210ENST00000568357 SLC16A10Q8TF71 515 aa20.1■□□□□ 0.81
VPS39-210ENST00000568357 SMIM5Q71RC9 77 aa20.09■□□□□ 0.81
VPS39-210ENST00000568357 IL17REQ8NFR9 667 aa20.09■□□□□ 0.81
VPS39-210ENST00000568357 GAS2L2Q8NHY3 880 aa20.09■□□□□ 0.81
VPS39-210ENST00000568357 PTCD1O75127 700 aaKnown RBP20.08■□□□□ 0.81
VPS39-210ENST00000568357 HSPA6P17066 643 aa20.08■□□□□ 0.81
VPS39-210ENST00000568357 GNAT3A8MTJ3 354 aa20.07■□□□□ 0.8
VPS39-210ENST00000568357 MSH5O43196 834 aa20.07■□□□□ 0.8
VPS39-210ENST00000568357 AK7Q96M32 723 aa20.07■□□□□ 0.8
VPS39-210ENST00000568357 GRIN3BO60391 1043 aa20.06■□□□□ 0.8
VPS39-210ENST00000568357 C5P01031 1676 aa20.06■□□□□ 0.8
VPS39-210ENST00000568357 ADCY9O60503 1353 aa20.06■□□□□ 0.8
VPS39-210ENST00000568357 SLC39A6Q13433 755 aa20.05■□□□□ 0.8
VPS39-210ENST00000568357 GPBP1L1Q9HC44 474 aaPredicted RBP20.05■□□□□ 0.8
VPS39-210ENST00000568357 FLAD1Q8NFF5 587 aa20.04■□□□□ 0.8
VPS39-210ENST00000568357 C4BP0C0L5 1744 aa20.04■□□□□ 0.8
VPS39-210ENST00000568357 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.03■□□□□ 0.8
VPS39-210ENST00000568357 GNPATO15228 680 aa20.03■□□□□ 0.8
VPS39-210ENST00000568357 PHF14O94880 888 aa20.03■□□□□ 0.8
VPS39-210ENST00000568357 ZNF526Q8TF50 670 aaPredicted RBP20.03■□□□□ 0.8
VPS39-210ENST00000568357 SCN11AQ9UI33 1791 aa20.03■□□□□ 0.8
VPS39-210ENST00000568357 MYBBP1AQ9BQG0 1328 aaKnown RBP20.02■□□□□ 0.8
VPS39-210ENST00000568357 MRC1P22897 1456 aa20.02■□□□□ 0.8
VPS39-210ENST00000568357 TAF1LQ8IZX4 1826 aa20.02■□□□□ 0.79
VPS39-210ENST00000568357 SSFA2P28290 1259 aa20.01■□□□□ 0.79
VPS39-210ENST00000568357 RC3H1Q5TC82 1133 aaKnown RBP20.01■□□□□ 0.79
VPS39-210ENST00000568357 PLEKHF1Q96S99 279 aa20.01■□□□□ 0.79
VPS39-210ENST00000568357 PRKRIP1Q9H875 184 aaPredicted RBP20.01■□□□□ 0.79
VPS39-210ENST00000568357 ADAMTS7Q9UKP4 1686 aa20■□□□□ 0.79
VPS39-210ENST00000568357 TEFQ10587 303 aa20■□□□□ 0.79
VPS39-210ENST00000568357 MSL1Q68DK7 614 aa20■□□□□ 0.79
VPS39-210ENST00000568357 CEMIPQ8WUJ3 1361 aa19.99■□□□□ 0.79
VPS39-210ENST00000568357 ZNF316A6NFI3 1004 aaPredicted RBP19.99■□□□□ 0.79
VPS39-210ENST00000568357 CNTNAP4Q9C0A0 1308 aa19.99■□□□□ 0.79
VPS39-210ENST00000568357 MCM10Q7L590 875 aa19.98■□□□□ 0.79
VPS39-210ENST00000568357 DNAJC10Q8IXB1 793 aa19.98■□□□□ 0.79
VPS39-210ENST00000568357 RTCBQ9Y3I0 505 aaKnown RBP19.98■□□□□ 0.79
VPS39-210ENST00000568357 RPS6KA4O75676 772 aa19.97■□□□□ 0.79
VPS39-210ENST00000568357 CRKLP46109 303 aaKnown RBP19.97■□□□□ 0.79
VPS39-210ENST00000568357 DCTN1Q14203 1278 aa19.97■□□□□ 0.79
VPS39-210ENST00000568357 TRAPPC3LQ5T215 181 aa19.97■□□□□ 0.79
VPS39-210ENST00000568357 HTATSF1O43719 755 aaKnown RBP19.96■□□□□ 0.79
VPS39-210ENST00000568357 INTS5Q6P9B9 1019 aaKnown RBP19.96■□□□□ 0.79
VPS39-210ENST00000568357 ZNF790Q6PG37 636 aa19.96■□□□□ 0.79
VPS39-210ENST00000568357 RTF1Q92541 710 aaKnown RBP19.96■□□□□ 0.79
VPS39-210ENST00000568357 ZNF831Q5JPB2 1677 aa19.96■□□□□ 0.79
VPS39-210ENST00000568357 KCNQ3O43525 872 aa19.95■□□□□ 0.78
VPS39-210ENST00000568357 TTC5Q8N0Z6 440 aa19.95■□□□□ 0.78
VPS39-210ENST00000568357 ARHGEF1Q92888 912 aaKnown RBP19.95■□□□□ 0.78
VPS39-210ENST00000568357 KCPQ6ZWJ8 1503 aa19.94■□□□□ 0.78
VPS39-210ENST00000568357 BTBD11A6QL63 1104 aa19.94■□□□□ 0.78
VPS39-210ENST00000568357 NEFMP07197 916 aa19.94■□□□□ 0.78
VPS39-210ENST00000568357 CYP19A1P11511 503 aaPredicted RBP19.94■□□□□ 0.78
VPS39-210ENST00000568357 VSIG10Q8N0Z9 540 aa19.94■□□□□ 0.78
VPS39-210ENST00000568357 ZNF496Q96IT1 587 aaPredicted RBP19.94■□□□□ 0.78
VPS39-210ENST00000568357 PNNQ9H307 717 aaKnown RBP19.94■□□□□ 0.78
VPS39-210ENST00000568357 UBR3Q6ZT12 1888 aa19.94■□□□□ 0.78
VPS39-210ENST00000568357 NFE2L2Q16236 605 aa19.93■□□□□ 0.78
VPS39-210ENST00000568357 ADRA2BP18089 450 aa19.92■□□□□ 0.78
VPS39-210ENST00000568357 KIF3CO14782 793 aa19.91■□□□□ 0.78
VPS39-210ENST00000568357 CCDC87Q9NVE4 849 aa19.91■□□□□ 0.78
VPS39-210ENST00000568357 COL5A3P25940 1745 aaPredicted RBP19.9■□□□□ 0.78
VPS39-210ENST00000568357 RFC4P35249 363 aa19.9■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms