RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 YBX3P16989 372 aaKnown RBP eCLIP12.85□□□□□ -0.35
SF3B3-211ENST00000568291 C1QTNF8P60827 252 aa12.85□□□□□ -0.35
SF3B3-211ENST00000568291 FLAD1Q8NFF5 587 aa12.85□□□□□ -0.35
SF3B3-211ENST00000568291 U2SURPO15042 1029 aaKnown RBP12.84□□□□□ -0.35
SF3B3-211ENST00000568291 DIAPH1O60610 1272 aaKnown RBP12.84□□□□□ -0.35
SF3B3-211ENST00000568291 GIGYF1O75420 1035 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-211ENST00000568291 PHKG2P15735 406 aa12.84□□□□□ -0.35
SF3B3-211ENST00000568291 HMGB2P26583 209 aaKnown RBP12.84□□□□□ -0.35
SF3B3-211ENST00000568291 COL5A3P25940 1745 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-211ENST00000568291 GRIN3BO60391 1043 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 PHF14O94880 888 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 PPP2R1AP30153 589 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 PLEKHO1Q53GL0 409 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-211ENST00000568291 ZNF530Q6P9A1 599 aaPredicted RBP12.83□□□□□ -0.36
SF3B3-211ENST00000568291 IFNL2Q8IZJ0 200 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 PIGBQ92521 554 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 KIF13BQ9NQT8 1826 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 ZNF831Q5JPB2 1677 aa12.83□□□□□ -0.36
SF3B3-211ENST00000568291 AMIGO3Q86WK7 504 aa12.82□□□□□ -0.36
SF3B3-211ENST00000568291 C4AP0C0L4 1744 aa12.82□□□□□ -0.36
SF3B3-211ENST00000568291 ATP10DQ9P241 1426 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 NKX1-1Q15270 411 aaPredicted RBP12.81□□□□□ -0.36
SF3B3-211ENST00000568291 SMIM5Q71RC9 77 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 RNF39Q9H2S5 420 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.81□□□□□ -0.361e-16■■□□□ 12.2
SF3B3-211ENST00000568291 TMOD3Q9NYL9 352 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 ASAP1Q9ULH1 1129 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 CD2APQ9Y5K6 639 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 KIAA1551Q9HCM1 1747 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 NPC1L1Q9UHC9 1359 aa12.81□□□□□ -0.36
SF3B3-211ENST00000568291 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.8□□□□□ -0.36
SF3B3-211ENST00000568291 LOC102724428A0A0B4J2F2 783 aa12.8□□□□□ -0.36
SF3B3-211ENST00000568291 SIK1P57059 783 aa12.8□□□□□ -0.36
SF3B3-211ENST00000568291 LINC00116Q8NCU8 138 aa12.8□□□□□ -0.36
SF3B3-211ENST00000568291 CICQ96RK0 1608 aaPredicted RBP12.8□□□□□ -0.36
SF3B3-211ENST00000568291 PLEKHG2Q9H7P9 1386 aa12.8□□□□□ -0.36
SF3B3-211ENST00000568291 N4BP2Q86UW6 1770 aaPredicted RBP12.79□□□□□ -0.36
SF3B3-211ENST00000568291 NPM3O75607 178 aaKnown RBP12.79□□□□□ -0.36
SF3B3-211ENST00000568291 SSFA2P28290 1259 aa12.79□□□□□ -0.36
SF3B3-211ENST00000568291 LGR6Q9HBX8 967 aa12.79□□□□□ -0.36
SF3B3-211ENST00000568291 GOLGB1Q14789 3259 aaKnown RBP12.79□□□□□ -0.36
SF3B3-211ENST00000568291 ADCY9O60503 1353 aa12.79□□□□□ -0.36
SF3B3-211ENST00000568291 KDRP35968 1356 aa12.79□□□□□ -0.36
SF3B3-211ENST00000568291 VIRMAQ69YN4 1812 aaKnown RBP12.78□□□□□ -0.36
SF3B3-211ENST00000568291 GNPATO15228 680 aa12.78□□□□□ -0.36
SF3B3-211ENST00000568291 MTHFSDQ2M296 383 aaKnown RBP12.78□□□□□ -0.36
SF3B3-211ENST00000568291 AMOTQ4VCS5 1084 aa12.78□□□□□ -0.36
SF3B3-211ENST00000568291 MYH14Q7Z406 1995 aaKnown RBP12.78□□□□□ -0.36
SF3B3-211ENST00000568291 BRCA1P38398 1863 aaKnown RBP12.77□□□□□ -0.37
SF3B3-211ENST00000568291 ITPK1Q13572 414 aa12.77□□□□□ -0.37
SF3B3-211ENST00000568291 C1orf141Q5JVX7 400 aa12.77□□□□□ -0.37
SF3B3-211ENST00000568291 ATG3Q9NT62 314 aa12.77□□□□□ -0.37
SF3B3-211ENST00000568291 TJP1Q07157 1748 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 SCN11AQ9UI33 1791 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 ATP6V1AP38606 617 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 CABP4P57796 275 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 NFATC2IPQ8NCF5 419 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 DCAF5Q96JK2 942 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 PHACTR3Q96KR7 559 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 CFAP53Q96M91 514 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 WWC3Q9ULE0 1092 aa12.76□□□□□ -0.37
SF3B3-211ENST00000568291 KDM6AO15550 1401 aaPredicted RBP12.76□□□□□ -0.37
SF3B3-211ENST00000568291 PXDNLA1KZ92 1463 aa12.75□□□□□ -0.37
SF3B3-211ENST00000568291 U2AF1L5P0DN76 240 aaPredicted RBP12.75□□□□□ -0.37
SF3B3-211ENST00000568291 U2AF1Q01081 240 aaKnown RBP eCLIP12.75□□□□□ -0.37
SF3B3-211ENST00000568291 RBM42Q9BTD8 480 aaKnown RBP12.75□□□□□ -0.37
SF3B3-211ENST00000568291 COL3A1P02461 1466 aaPredicted RBP12.74□□□□□ -0.37
SF3B3-211ENST00000568291 PTCD1O75127 700 aaKnown RBP12.74□□□□□ -0.37
SF3B3-211ENST00000568291 PRKAR2BP31323 418 aa12.74□□□□□ -0.37
SF3B3-211ENST00000568291 ZEB1P37275 1124 aaPredicted RBP12.74□□□□□ -0.37
SF3B3-211ENST00000568291 SLC4A9Q96Q91 983 aa12.74□□□□□ -0.37
SF3B3-211ENST00000568291 ARFGEF1Q9Y6D6 1849 aa12.74□□□□□ -0.37
SF3B3-211ENST00000568291 C10orf71Q711Q0 1435 aa12.73□□□□□ -0.37
SF3B3-211ENST00000568291 ERVV-2B6SEH9 535 aa12.73□□□□□ -0.37
SF3B3-211ENST00000568291 HSP90AB1P08238 724 aaKnown RBP12.73□□□□□ -0.37
SF3B3-211ENST00000568291 MMP10P09238 476 aa12.73□□□□□ -0.37
SF3B3-211ENST00000568291 AKAP4Q5JQC9 854 aa12.73□□□□□ -0.37
SF3B3-211ENST00000568291 RSPH6AQ9H0K4 717 aa12.73□□□□□ -0.37
SF3B3-211ENST00000568291 GPBP1L1Q9HC44 474 aaPredicted RBP12.73□□□□□ -0.37
SF3B3-211ENST00000568291 RNMTO43148 476 aaKnown RBP12.72□□□□□ -0.37
SF3B3-211ENST00000568291 SLC39A6Q13433 755 aa12.72□□□□□ -0.37
SF3B3-211ENST00000568291 ZNF526Q8TF50 670 aaPredicted RBP12.72□□□□□ -0.37
SF3B3-211ENST00000568291 NUDCQ9Y266 331 aa12.72□□□□□ -0.37
SF3B3-211ENST00000568291 CNTNAP4Q9C0A0 1308 aa12.71□□□□□ -0.37
SF3B3-211ENST00000568291 RTCBQ9Y3I0 505 aaKnown RBP12.71□□□□□ -0.37
SF3B3-211ENST00000568291 IL17REQ8NFR9 667 aa12.7□□□□□ -0.38
SF3B3-211ENST00000568291 ADAMTS7Q9UKP4 1686 aa12.7□□□□□ -0.38
SF3B3-211ENST00000568291 SLC52A2Q9HAB3 445 aa12.69□□□□□ -0.38
SF3B3-211ENST00000568291 MRC1P22897 1456 aa12.68□□□□□ -0.38
SF3B3-211ENST00000568291 DCTN1Q14203 1278 aa12.68□□□□□ -0.38
SF3B3-211ENST00000568291 TRAPPC3LQ5T215 181 aa12.68□□□□□ -0.38
SF3B3-211ENST00000568291 RC3H1Q5TC82 1133 aaKnown RBP12.68□□□□□ -0.38
SF3B3-211ENST00000568291 GNAT3A8MTJ3 354 aa12.67□□□□□ -0.38
SF3B3-211ENST00000568291 FCHSD2O94868 740 aa12.67□□□□□ -0.38
SF3B3-211ENST00000568291 GYS1P13807 737 aa12.67□□□□□ -0.38
SF3B3-211ENST00000568291 RALBP1Q15311 655 aa12.67□□□□□ -0.38
SF3B3-211ENST00000568291 MCM10Q7L590 875 aa12.67□□□□□ -0.38
SF3B3-211ENST00000568291 NLGN1Q8N2Q7 840 aa12.67□□□□□ -0.38
SF3B3-211ENST00000568291 ARHGEF1Q92888 912 aaKnown RBP12.67□□□□□ -0.38
SF3B3-211ENST00000568291 CCDC87Q9NVE4 849 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms