RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 CAMTA1Q9Y6Y1 1673 aa8.94□□□□□ -0.98
SMG1-215ENST00000568239 ABCC4O15439 1325 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 ROBO1Q9Y6N7 1651 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 F6X3S4 739 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 PHKG2P15735 406 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 EIF4A1P60842 406 aaKnown RBP8.93□□□□□ -0.98
SMG1-215ENST00000568239 BTG4Q9NY30 223 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 PTPRCP08575 1304 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 LRRC37A3O60309 1634 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 NHSL1Q5SYE7 1610 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 ZBTB7BO15156 539 aaPredicted RBP8.93□□□□□ -0.98
SMG1-215ENST00000568239 NFATC2IPQ8NCF5 419 aa8.93□□□□□ -0.98
SMG1-215ENST00000568239 CHMP4BQ9H444 224 aaKnown RBP8.93□□□□□ -0.98
SMG1-215ENST00000568239 SLC39A6Q13433 755 aa8.92□□□□□ -0.98
SMG1-215ENST00000568239 DDX54Q8TDD1 881 aaKnown RBP8.92□□□□□ -0.98
SMG1-215ENST00000568239 LMO7Q8WWI1 1683 aa8.92□□□□□ -0.98
SMG1-215ENST00000568239 CYP27B1O15528 508 aa8.92□□□□□ -0.98
SMG1-215ENST00000568239 ADAMTS2O95450 1211 aa8.92□□□□□ -0.98
SMG1-215ENST00000568239 FLIIQ13045 1269 aa8.92□□□□□ -0.98
SMG1-215ENST00000568239 BCL11AQ9H165 835 aa8.92□□□□□ -0.98
SMG1-215ENST00000568239 TOM1O60784 492 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.91□□□□□ -0.988e-9■■■■□ 22.7
SMG1-215ENST00000568239 VIRMAQ69YN4 1812 aaKnown RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 COL5A2P05997 1499 aaPredicted RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 KAT6BQ8WYB5 2073 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 LTBP4Q8N2S1 1624 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 NUTM2BA6NNL0 878 aaPredicted RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 NUTM2EB1AL46 878 aaPredicted RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 NPM3O75607 178 aaKnown RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 ANXA1P04083 346 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 NUTM2AQ8IVF1 878 aaPredicted RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 ZCRB1Q8TBF4 217 aaKnown RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 FAM208AQ9UK61 1670 aaKnown RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 IL2RBP14784 551 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 ERICH6Q7L0X2 663 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 PHAXQ9H814 394 aaKnown RBP8.91□□□□□ -0.98
SMG1-215ENST00000568239 SLC52A2Q9HAB3 445 aa8.91□□□□□ -0.98
SMG1-215ENST00000568239 PRAMEF22A3QJZ6 481 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 PDE4AP27815 886 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 CABP4P57796 275 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 DCAF5Q96JK2 942 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 CARD10Q9BWT7 1032 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 CHPF2Q9P2E5 772 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 PDZRN3Q9UPQ7 1066 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 ABCC6O95255 1503 aa8.9□□□□□ -0.98
SMG1-215ENST00000568239 UBAP1LF5GYI3 381 aa8.9□□□□□ -0.99
SMG1-215ENST00000568239 INTS3Q68E01 1043 aaKnown RBP8.9□□□□□ -0.99
SMG1-215ENST00000568239 TTC5Q8N0Z6 440 aa8.9□□□□□ -0.99
SMG1-215ENST00000568239 ABCA3Q99758 1704 aa8.89□□□□□ -0.99
SMG1-215ENST00000568239 HSP90AB1P08238 724 aaKnown RBP8.89□□□□□ -0.99
SMG1-215ENST00000568239 HDAC1Q13547 482 aaPredicted RBP8.89□□□□□ -0.99
SMG1-215ENST00000568239 ZNF790Q6PG37 636 aa8.89□□□□□ -0.99
SMG1-215ENST00000568239 SOS1Q07889 1333 aaPredicted RBP8.89□□□□□ -0.99
SMG1-215ENST00000568239 KDM6AO15550 1401 aaPredicted RBP8.89□□□□□ -0.99
SMG1-215ENST00000568239 GIGYF1O75420 1035 aaPredicted RBP8.89□□□□□ -0.99
SMG1-215ENST00000568239 PCDH11XQ9BZA7 1347 aa8.89□□□□□ -0.99
SMG1-215ENST00000568239 PCDH11YQ9BZA8 1340 aa8.89□□□□□ -0.99
SMG1-215ENST00000568239 RGS12O14924 1447 aa8.88□□□□□ -0.99
SMG1-215ENST00000568239 NPM2Q86SE8 214 aaKnown RBP8.88□□□□□ -0.99
SMG1-215ENST00000568239 MEIS3Q99687 375 aa8.88□□□□□ -0.99
SMG1-215ENST00000568239 CHMP4AQ9BY43 222 aa8.88□□□□□ -0.99
SMG1-215ENST00000568239 CCT4P50991 539 aaKnown RBP8.88□□□□□ -0.99
SMG1-215ENST00000568239 OVOS2A0A0G2JMS6 1433 aa8.88□□□□□ -0.99
SMG1-215ENST00000568239 HOXB7P09629 217 aa8.88□□□□□ -0.99
SMG1-215ENST00000568239 DBF4Q9UBU7 674 aaPredicted RBP8.88□□□□□ -0.99
SMG1-215ENST00000568239 KDM3BQ7LBC6 1761 aa8.88□□□□□ -0.99
SMG1-215ENST00000568239 BACH2Q9BYV9 841 aa8.87□□□□□ -0.99
SMG1-215ENST00000568239 CACNA1FO60840 1977 aa8.87□□□□□ -0.99
SMG1-215ENST00000568239 AIMP1Q12904 312 aaKnown RBP8.87□□□□□ -0.99
SMG1-215ENST00000568239 ZNF496Q96IT1 587 aaPredicted RBP8.87□□□□□ -0.99
SMG1-215ENST00000568239 SCN11AQ9UI33 1791 aa8.87□□□□□ -0.99
SMG1-215ENST00000568239 AHDC1Q5TGY3 1603 aaPredicted RBP8.86□□□□□ -0.99
SMG1-215ENST00000568239 PHLPP1O60346 1717 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 PI4KAP2A4QPH2 592 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 ANKRD45Q5TZF3 282 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 PI4KAP1Q8N8J0 262 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 LNPKQ9C0E8 428 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 CCDC9Q9Y3X0 531 aaKnown RBP8.86□□□□□ -0.99
SMG1-215ENST00000568239 MYL6BP14649 208 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 PROSER3Q2NL68 480 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 SIRT2Q8IXJ6 389 aa8.86□□□□□ -0.99
SMG1-215ENST00000568239 APBB1O00213 710 aa8.85□□□□□ -0.99
SMG1-215ENST00000568239 FAM161AQ3B820 660 aa8.85□□□□□ -0.99
SMG1-215ENST00000568239 SMC5Q8IY18 1101 aa8.85□□□□□ -0.99
SMG1-215ENST00000568239 PARP4Q9UKK3 1724 aaKnown RBP8.85□□□□□ -0.99
SMG1-215ENST00000568239 A0A0G2JS52 829 aa8.85□□□□□ -0.99
SMG1-215ENST00000568239 PIP4K2AP48426 406 aaPredicted RBP8.85□□□□□ -0.99
SMG1-215ENST00000568239 FMNL2Q96PY5 1086 aa8.85□□□□□ -0.99
SMG1-215ENST00000568239 PTCD1O75127 700 aaKnown RBP8.85□□□□□ -0.99
SMG1-215ENST00000568239 ZBTB47Q9UFB7 747 aaPredicted RBP8.85□□□□□ -0.99
SMG1-215ENST00000568239 PKD1L3Q7Z443 1732 aa8.84□□□□□ -0.99
SMG1-215ENST00000568239 SNRPA1P09661 255 aaKnown RBP8.84□□□□□ -0.99
SMG1-215ENST00000568239 DNAAF4Q8WXU2 420 aa8.84□□□□□ -0.99
SMG1-215ENST00000568239 GCC1Q96CN9 775 aa8.84□□□□□ -0.99
SMG1-215ENST00000568239 SRCIN1Q9C0H9 1055 aa8.84□□□□□ -0.99
SMG1-215ENST00000568239 USP16Q9Y5T5 823 aa8.84□□□□□ -0.99
SMG1-215ENST00000568239 SIPA1L3O60292 1781 aaPredicted RBP8.84□□□□□ -0.99
SMG1-215ENST00000568239 GNAI2P04899 355 aa8.84□□□□□ -0.99
SMG1-215ENST00000568239 ANP32AP39687 249 aaKnown RBP8.84□□□□□ -0.99
SMG1-215ENST00000568239 CEP85Q6P2H3 762 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms