RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 IGSF1Q8N6C5 1336 aa6.53□□□□□ -1.36
CLK3-219ENST00000567805 GOLGB1Q14789 3259 aaKnown RBP6.53□□□□□ -1.36
CLK3-219ENST00000567805 HMGB2P26583 209 aaKnown RBP6.53□□□□□ -1.36
CLK3-219ENST00000567805 FKBP8Q14318 412 aa6.53□□□□□ -1.36
CLK3-219ENST00000567805 NKX1-1Q15270 411 aaPredicted RBP6.53□□□□□ -1.36
CLK3-219ENST00000567805 AMER1Q5JTC6 1135 aaPredicted RBP6.53□□□□□ -1.36
CLK3-219ENST00000567805 PDGFDQ9GZP0 370 aaPredicted RBP6.53□□□□□ -1.36
CLK3-219ENST00000567805 PPP1R1BQ9UD71 204 aaPredicted RBP6.53□□□□□ -1.36
CLK3-219ENST00000567805 ZNF831Q5JPB2 1677 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 SCN11AQ9UI33 1791 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 PER1O15534 1290 aaPredicted RBP6.52□□□□□ -1.37
CLK3-219ENST00000567805 ZBTB7AO95365 584 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 ATXN8OSP0DMR3 200 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 ZNF827Q17R98 1081 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 IFNL2Q8IZJ0 200 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 MTFR1LQ9H019 292 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 CCNL1Q9UK58 526 aaPredicted RBP6.52□□□□□ -1.37
CLK3-219ENST00000567805 C4BP0C0L5 1744 aa6.52□□□□□ -1.37
CLK3-219ENST00000567805 UBR3Q6ZT12 1888 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 PRR29P0C7W0 189 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 PHKG2P15735 406 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 PTGER2P43116 358 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 MPRIPQ6WCQ1 1025 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 SLC16A10Q8TF71 515 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 SMARCC1Q92922 1105 aaPredicted RBP6.51□□□□□ -1.37
CLK3-219ENST00000567805 TFCP2L1Q9NZI6 479 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 KDRP35968 1356 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 PALLDQ8WX93 1383 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 NPC1L1Q9UHC9 1359 aa6.51□□□□□ -1.37
CLK3-219ENST00000567805 PNPLA7Q6ZV29 1317 aa6.5□□□□□ -1.37
CLK3-219ENST00000567805 HSP90AB1P08238 724 aaKnown RBP6.5□□□□□ -1.37
CLK3-219ENST00000567805 CD44P16070 742 aaKnown RBP6.5□□□□□ -1.37
CLK3-219ENST00000567805 KCNQ4P56696 695 aa6.5□□□□□ -1.37
CLK3-219ENST00000567805 AMOTQ4VCS5 1084 aa6.5□□□□□ -1.37
CLK3-219ENST00000567805 PLEKHO1Q53GL0 409 aaPredicted RBP6.5□□□□□ -1.37
CLK3-219ENST00000567805 PIGBQ92521 554 aa6.5□□□□□ -1.37
CLK3-219ENST00000567805 SGIP1Q9BQI5 828 aa6.5□□□□□ -1.37
CLK3-219ENST00000567805 TMOD3Q9NYL9 352 aa6.5□□□□□ -1.37
CLK3-219ENST00000567805 COL5A3P25940 1745 aaPredicted RBP6.5□□□□□ -1.37
CLK3-219ENST00000567805 ERVV-2B6SEH9 535 aa6.49□□□□□ -1.37
CLK3-219ENST00000567805 IL13P35225 146 aa6.49□□□□□ -1.37
CLK3-219ENST00000567805 MTHFSP49914 203 aa6.49□□□□□ -1.37
CLK3-219ENST00000567805 CC2D1BQ5T0F9 858 aaKnown RBP6.49□□□□□ -1.37
CLK3-219ENST00000567805 SULT6B1Q6IMI4 303 aa6.49□□□□□ -1.37
CLK3-219ENST00000567805 DCAF5Q96JK2 942 aa6.49□□□□□ -1.37
CLK3-219ENST00000567805 KDM6AO15550 1401 aaPredicted RBP6.49□□□□□ -1.37
CLK3-219ENST00000567805 CHD4Q14839 1912 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 MAP3K5Q99683 1374 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 CICQ96RK0 1608 aaPredicted RBP6.48□□□□□ -1.37
CLK3-219ENST00000567805 POLD1P28340 1107 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 C1orf141Q5JVX7 400 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 ZNF530Q6P9A1 599 aaPredicted RBP6.48□□□□□ -1.37
CLK3-219ENST00000567805 AEBP1Q8IUX7 1158 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 ARXQ96QS3 562 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 ADAMTS7Q9UKP4 1686 aa6.48□□□□□ -1.37
CLK3-219ENST00000567805 COL3A1P02461 1466 aaPredicted RBP6.47□□□□□ -1.37
CLK3-219ENST00000567805 LOC102724428A0A0B4J2F2 783 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 DIAPH1O60610 1272 aaKnown RBP6.47□□□□□ -1.37
CLK3-219ENST00000567805 SIK1P57059 783 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 FLAD1Q8NFF5 587 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 AK7Q96M32 723 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 SYT17Q9BSW7 474 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 FHDC1Q9C0D6 1143 aaPredicted RBP6.47□□□□□ -1.37
CLK3-219ENST00000567805 ATG3Q9NT62 314 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 ASAP1Q9ULH1 1129 aa6.47□□□□□ -1.37
CLK3-219ENST00000567805 C4AP0C0L4 1744 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 SSFA2P28290 1259 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 ATP6V1AP38606 617 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 TJP1Q07157 1748 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 AKAP4Q5JQC9 854 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 COL23A1Q86Y22 540 aaPredicted RBP6.46□□□□□ -1.38
CLK3-219ENST00000567805 FARP1Q9Y4F1 1045 aaPredicted RBP6.46□□□□□ -1.38
CLK3-219ENST00000567805 SIPA1L3O60292 1781 aaPredicted RBP6.46□□□□□ -1.38
CLK3-219ENST00000567805 UBR2Q8IWV8 1755 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 MRC1P22897 1456 aa6.46□□□□□ -1.38
CLK3-219ENST00000567805 MYH14Q7Z406 1995 aaKnown RBP6.46□□□□□ -1.38
CLK3-219ENST00000567805 HMOX1P09601 288 aa6.45□□□□□ -1.38
CLK3-219ENST00000567805 CABP4P57796 275 aa6.45□□□□□ -1.38
CLK3-219ENST00000567805 ITPK1Q13572 414 aa6.45□□□□□ -1.38
CLK3-219ENST00000567805 LINC00116Q8NCU8 138 aa6.45□□□□□ -1.38
CLK3-219ENST00000567805 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP6.44□□□□□ -1.38
CLK3-219ENST00000567805 CNGB1Q14028 1251 aaPredicted RBP6.44□□□□□ -1.38
CLK3-219ENST00000567805 AMIGO3Q86WK7 504 aa6.44□□□□□ -1.38
CLK3-219ENST00000567805 NFATC2IPQ8NCF5 419 aa6.44□□□□□ -1.38
CLK3-219ENST00000567805 CFAP53Q96M91 514 aa6.44□□□□□ -1.38
CLK3-219ENST00000567805 DCBLD2Q96PD2 775 aa6.44□□□□□ -1.38
CLK3-219ENST00000567805 KIF13BQ9NQT8 1826 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 U2SURPO15042 1029 aaKnown RBP6.43□□□□□ -1.38
CLK3-219ENST00000567805 GNPATO15228 680 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 PHF14O94880 888 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 YY1P25490 414 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 MTHFSDQ2M296 383 aaKnown RBP6.43□□□□□ -1.38
CLK3-219ENST00000567805 RC3H1Q5TC82 1133 aaKnown RBP6.43□□□□□ -1.38
CLK3-219ENST00000567805 MSL1Q68DK7 614 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 KLHL34Q8N239 644 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 OTUD5Q96G74 571 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 SLC4A9Q96Q91 983 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 SLC52A2Q9HAB3 445 aa6.43□□□□□ -1.38
CLK3-219ENST00000567805 RTCBQ9Y3I0 505 aaKnown RBP6.43□□□□□ -1.38
CLK3-219ENST00000567805 CNTNAP4Q9C0A0 1308 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms