RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 MSH5O43196 834 aa25.06■■□□□ 1.6
CLN3-227ENST00000567495 GAS2L2Q8NHY3 880 aa25.06■■□□□ 1.6
CLN3-227ENST00000567495 ARXQ96QS3 562 aa25.06■■□□□ 1.6
CLN3-227ENST00000567495 QSER1Q2KHR3 1735 aa25.04■■□□□ 1.6
CLN3-227ENST00000567495 RNMTO43148 476 aaKnown RBP25.04■■□□□ 1.6
CLN3-227ENST00000567495 LINC00116Q8NCU8 138 aa25.04■■□□□ 1.6
CLN3-227ENST00000567495 RBM42Q9BTD8 480 aaKnown RBP25.04■■□□□ 1.6
CLN3-227ENST00000567495 SLC52A2Q9HAB3 445 aa25.04■■□□□ 1.6
CLN3-227ENST00000567495 DCAF8L1A6NGE4 600 aa25.03■■□□□ 1.6
CLN3-227ENST00000567495 SSFA2P28290 1259 aa25.03■■□□□ 1.6
CLN3-227ENST00000567495 ITPK1Q13572 414 aa25.03■■□□□ 1.6
CLN3-227ENST00000567495 FCHSD2O94868 740 aa25.02■■□□□ 1.6
CLN3-227ENST00000567495 U2AF1L5P0DN76 240 aaPredicted RBP25.02■■□□□ 1.6
CLN3-227ENST00000567495 U2AF1Q01081 240 aaKnown RBP eCLIP25.02■■□□□ 1.6
CLN3-227ENST00000567495 C5P01031 1676 aa25.01■■□□□ 1.59
CLN3-227ENST00000567495 LGR6Q9HBX8 967 aa25.01■■□□□ 1.59
CLN3-227ENST00000567495 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25■■□□□ 1.59
CLN3-227ENST00000567495 PRKAR2BP31323 418 aa25■■□□□ 1.59
CLN3-227ENST00000567495 RALBP1Q15311 655 aa25■■□□□ 1.59
CLN3-227ENST00000567495 RC3H1Q5TC82 1133 aaKnown RBP25■■□□□ 1.59
CLN3-227ENST00000567495 FHDC1Q9C0D6 1143 aaPredicted RBP25■■□□□ 1.59
CLN3-227ENST00000567495 RSPH6AQ9H0K4 717 aa25■■□□□ 1.59
CLN3-227ENST00000567495 GNAT3A8MTJ3 354 aa24.99■■□□□ 1.59
CLN3-227ENST00000567495 GNPATO15228 680 aa24.99■■□□□ 1.59
CLN3-227ENST00000567495 DDX10Q13206 875 aaKnown RBP24.99■■□□□ 1.59
CLN3-227ENST00000567495 SLC4A9Q96Q91 983 aa24.99■■□□□ 1.59
CLN3-227ENST00000567495 MAP3K5Q99683 1374 aa24.99■■□□□ 1.59
CLN3-227ENST00000567495 SYT17Q9BSW7 474 aa24.99■■□□□ 1.59
CLN3-227ENST00000567495 C4BP0C0L5 1744 aa24.98■■□□□ 1.59
CLN3-227ENST00000567495 PTCD1O75127 700 aaKnown RBP24.98■■□□□ 1.59
CLN3-227ENST00000567495 CNTNAP4Q9C0A0 1308 aa24.96■■□□□ 1.59
CLN3-227ENST00000567495 PHF14O94880 888 aa24.96■■□□□ 1.59
CLN3-227ENST00000567495 RTCBQ9Y3I0 505 aaKnown RBP24.96■■□□□ 1.59
CLN3-227ENST00000567495 MRC1P22897 1456 aa24.96■■□□□ 1.59
CLN3-227ENST00000567495 ADRA2BP18089 450 aa24.95■■□□□ 1.58
CLN3-227ENST00000567495 TAF1LQ8IZX4 1826 aa24.94■■□□□ 1.58
CLN3-227ENST00000567495 PHACTR3Q96KR7 559 aa24.94■■□□□ 1.58
CLN3-227ENST00000567495 TEFQ10587 303 aa24.93■■□□□ 1.58
CLN3-227ENST00000567495 AMIGO3Q86WK7 504 aa24.93■■□□□ 1.58
CLN3-227ENST00000567495 ZNF831Q5JPB2 1677 aa24.93■■□□□ 1.58
CLN3-227ENST00000567495 NEFMP07197 916 aa24.92■■□□□ 1.58
CLN3-227ENST00000567495 TRAPPC3LQ5T215 181 aa24.92■■□□□ 1.58
CLN3-227ENST00000567495 IL17REQ8NFR9 667 aa24.92■■□□□ 1.58
CLN3-227ENST00000567495 TUBGCP6Q96RT7 1819 aa24.91■■□□□ 1.58
CLN3-227ENST00000567495 SCN11AQ9UI33 1791 aa24.91■■□□□ 1.58
CLN3-227ENST00000567495 RPS6KA4O75676 772 aa24.91■■□□□ 1.58
CLN3-227ENST00000567495 MSL1Q68DK7 614 aa24.91■■□□□ 1.58
CLN3-227ENST00000567495 VSIG10Q8N0Z9 540 aa24.9■■□□□ 1.58
CLN3-227ENST00000567495 PNNQ9H307 717 aaKnown RBP24.9■■□□□ 1.58
CLN3-227ENST00000567495 HTATSF1O43719 755 aaKnown RBP24.89■■□□□ 1.58
CLN3-227ENST00000567495 SLC39A6Q13433 755 aa24.89■■□□□ 1.58
CLN3-227ENST00000567495 TTC5Q8N0Z6 440 aa24.89■■□□□ 1.58
CLN3-227ENST00000567495 RTF1Q92541 710 aaKnown RBP24.89■■□□□ 1.58
CLN3-227ENST00000567495 ADAMTS7Q9UKP4 1686 aa24.88■■□□□ 1.57
CLN3-227ENST00000567495 CRKLP46109 303 aaKnown RBP24.88■■□□□ 1.57
CLN3-227ENST00000567495 CEMIPQ8WUJ3 1361 aa24.88■■□□□ 1.57
CLN3-227ENST00000567495 COL24A1Q17RW2 1714 aa24.87■■□□□ 1.57
CLN3-227ENST00000567495 SMIM5Q71RC9 77 aa24.87■■□□□ 1.57
CLN3-227ENST00000567495 RFC4P35249 363 aa24.86■■□□□ 1.57
CLN3-227ENST00000567495 KLHL34Q8N239 644 aa24.86■■□□□ 1.57
CLN3-227ENST00000567495 NLGN1Q8N2Q7 840 aa24.86■■□□□ 1.57
CLN3-227ENST00000567495 DNAJC10Q8IXB1 793 aa24.85■■□□□ 1.57
CLN3-227ENST00000567495 ARHGEF1Q92888 912 aaKnown RBP24.85■■□□□ 1.57
CLN3-227ENST00000567495 CD2APQ9Y5K6 639 aa24.85■■□□□ 1.57
CLN3-227ENST00000567495 UBR3Q6ZT12 1888 aa24.85■■□□□ 1.57
CLN3-227ENST00000567495 MYBBP1AQ9BQG0 1328 aaKnown RBP24.85■■□□□ 1.57
CLN3-227ENST00000567495 ZNF790Q6PG37 636 aa24.84■■□□□ 1.57
CLN3-227ENST00000567495 CYP19A1P11511 503 aaPredicted RBP24.83■■□□□ 1.57
CLN3-227ENST00000567495 INTS5Q6P9B9 1019 aaKnown RBP24.83■■□□□ 1.57
CLN3-227ENST00000567495 TEX13AQ9BXU3 409 aaPredicted RBP24.83■■□□□ 1.57
CLN3-227ENST00000567495 CCDC87Q9NVE4 849 aa24.83■■□□□ 1.57
CLN3-227ENST00000567495 STARD3NLO95772 234 aa24.82■■□□□ 1.56
CLN3-227ENST00000567495 CICQ96RK0 1608 aaPredicted RBP24.8■■□□□ 1.56
CLN3-227ENST00000567495 BTBD11A6QL63 1104 aa24.8■■□□□ 1.56
CLN3-227ENST00000567495 FMNL2Q96PY5 1086 aa24.8■■□□□ 1.56
CLN3-227ENST00000567495 PLEKHF1Q96S99 279 aa24.8■■□□□ 1.56
CLN3-227ENST00000567495 KCPQ6ZWJ8 1503 aa24.8■■□□□ 1.56
CLN3-227ENST00000567495 ZNF496Q96IT1 587 aaPredicted RBP24.79■■□□□ 1.56
CLN3-227ENST00000567495 MAPK8IP3Q9UPT6 1336 aa24.79■■□□□ 1.56
CLN3-227ENST00000567495 COL5A3P25940 1745 aaPredicted RBP24.78■■□□□ 1.56
CLN3-227ENST00000567495 MMP10P09238 476 aa24.78■■□□□ 1.56
CLN3-227ENST00000567495 MCM10Q7L590 875 aa24.78■■□□□ 1.56
CLN3-227ENST00000567495 GYS1P13807 737 aa24.77■■□□□ 1.56
CLN3-227ENST00000567495 HEG1Q9ULI3 1381 aa24.77■■□□□ 1.56
CLN3-227ENST00000567495 NFE2L2Q16236 605 aa24.76■■□□□ 1.55
CLN3-227ENST00000567495 GPR162Q16538 588 aa24.76■■□□□ 1.55
CLN3-227ENST00000567495 NLGN2Q8NFZ4 835 aa24.76■■□□□ 1.55
CLN3-227ENST00000567495 SOS1Q07889 1333 aaPredicted RBP24.76■■□□□ 1.55
CLN3-227ENST00000567495 PRKRIP1Q9H875 184 aaPredicted RBP24.75■■□□□ 1.55
CLN3-227ENST00000567495 USP42Q9H9J4 1324 aaKnown RBP24.75■■□□□ 1.55
CLN3-227ENST00000567495 ZPR1O75312 459 aa24.74■■□□□ 1.55
CLN3-227ENST00000567495 TAF7Q15545 349 aaPredicted RBP24.74■■□□□ 1.55
CLN3-227ENST00000567495 TJP1Q07157 1748 aa24.74■■□□□ 1.55
CLN3-227ENST00000567495 PNISRQ8TF01 805 aaKnown RBP24.73■■□□□ 1.55
CLN3-227ENST00000567495 YY1P25490 414 aa24.72■■□□□ 1.55
CLN3-227ENST00000567495 DCTN1Q14203 1278 aa24.72■■□□□ 1.55
CLN3-227ENST00000567495 ZBTB1Q9Y2K1 713 aa24.72■■□□□ 1.55
CLN3-227ENST00000567495 MYH14Q7Z406 1995 aaKnown RBP24.72■■□□□ 1.55
CLN3-227ENST00000567495 A0A087WZG4 1122 aa24.71■■□□□ 1.55
CLN3-227ENST00000567495 PARP3Q9Y6F1 533 aa24.71■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 143.2 ms