RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 ZNF530Q6P9A1 599 aaPredicted RBP13.71□□□□□ -0.21
GTF3C1-206ENST00000566779 MIER1Q8N108 512 aa13.71□□□□□ -0.21
GTF3C1-206ENST00000566779 SCN11AQ9UI33 1791 aa13.71□□□□□ -0.22
GTF3C1-206ENST00000566779 C4BP0C0L5 1744 aa13.7□□□□□ -0.22
GTF3C1-206ENST00000566779 SULT6B1Q6IMI4 303 aa13.7□□□□□ -0.22
GTF3C1-206ENST00000566779 IFNL2Q8IZJ0 200 aa13.7□□□□□ -0.22
GTF3C1-206ENST00000566779 TMOD3Q9NYL9 352 aa13.7□□□□□ -0.22
GTF3C1-206ENST00000566779 PHKG2P15735 406 aa13.69□□□□□ -0.22
GTF3C1-206ENST00000566779 MTHFSP49914 203 aa13.69□□□□□ -0.22
GTF3C1-206ENST00000566779 UBR3Q6ZT12 1888 aa13.69□□□□□ -0.22
GTF3C1-206ENST00000566779 HMOX1P09601 288 aa13.68□□□□□ -0.22
GTF3C1-206ENST00000566779 PLEKHO1Q53GL0 409 aaPredicted RBP13.68□□□□□ -0.22
GTF3C1-206ENST00000566779 C1orf141Q5JVX7 400 aa13.68□□□□□ -0.22
GTF3C1-206ENST00000566779 PIGBQ92521 554 aa13.68□□□□□ -0.22
GTF3C1-206ENST00000566779 AKT1S1Q96B36 256 aa13.68□□□□□ -0.22
GTF3C1-206ENST00000566779 MTFR1LQ9H019 292 aa13.68□□□□□ -0.22
GTF3C1-206ENST00000566779 PNPLA7Q6ZV29 1317 aa13.66□□□□□ -0.22
GTF3C1-206ENST00000566779 U2SURPO15042 1029 aaKnown RBP13.66□□□□□ -0.22
GTF3C1-206ENST00000566779 PHF14O94880 888 aa13.66□□□□□ -0.22
GTF3C1-206ENST00000566779 SMARCC1Q92922 1105 aaPredicted RBP13.66□□□□□ -0.22
GTF3C1-206ENST00000566779 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.66□□□□□ -0.221e-7■■□□□ 13.6
GTF3C1-206ENST00000566779 PER1O15534 1290 aaPredicted RBP13.65□□□□□ -0.22
GTF3C1-206ENST00000566779 DIAPH1O60610 1272 aaKnown RBP13.65□□□□□ -0.22
GTF3C1-206ENST00000566779 IL13P35225 146 aa13.65□□□□□ -0.22
GTF3C1-206ENST00000566779 MSL1Q68DK7 614 aa13.65□□□□□ -0.22
GTF3C1-206ENST00000566779 AK7Q96M32 723 aa13.65□□□□□ -0.22
GTF3C1-206ENST00000566779 ASAP1Q9ULH1 1129 aa13.65□□□□□ -0.22
GTF3C1-206ENST00000566779 KDM6AO15550 1401 aaPredicted RBP13.64□□□□□ -0.23
GTF3C1-206ENST00000566779 PTGER2P43116 358 aa13.64□□□□□ -0.23
GTF3C1-206ENST00000566779 NKX1-1Q15270 411 aaPredicted RBP13.64□□□□□ -0.23
GTF3C1-206ENST00000566779 AMOTQ4VCS5 1084 aa13.64□□□□□ -0.23
GTF3C1-206ENST00000566779 RBM42Q9BTD8 480 aaKnown RBP13.64□□□□□ -0.23
GTF3C1-206ENST00000566779 COL5A3P25940 1745 aaPredicted RBP13.64□□□□□ -0.23
GTF3C1-206ENST00000566779 COL3A1P02461 1466 aaPredicted RBP13.63□□□□□ -0.23
GTF3C1-206ENST00000566779 HSP90AB1P08238 724 aaKnown RBP13.63□□□□□ -0.23
GTF3C1-206ENST00000566779 POLD1P28340 1107 aa13.63□□□□□ -0.23
GTF3C1-206ENST00000566779 CABP4P57796 275 aa13.63□□□□□ -0.23
GTF3C1-206ENST00000566779 FHDC1Q9C0D6 1143 aaPredicted RBP13.63□□□□□ -0.23
GTF3C1-206ENST00000566779 COL24A1Q17RW2 1714 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 LOC102724428A0A0B4J2F2 783 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 ATP6V1AP38606 617 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 SIK1P57059 783 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 SMIM5Q71RC9 77 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 DCAF5Q96JK2 942 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 ARXQ96QS3 562 aa13.62□□□□□ -0.23
GTF3C1-206ENST00000566779 KDRP35968 1356 aa13.61□□□□□ -0.23
GTF3C1-206ENST00000566779 NPC1L1Q9UHC9 1359 aa13.61□□□□□ -0.23
GTF3C1-206ENST00000566779 CACNB1Q02641 598 aaPredicted RBP13.61□□□□□ -0.23
GTF3C1-206ENST00000566779 COL23A1Q86Y22 540 aaPredicted RBP13.61□□□□□ -0.23
GTF3C1-206ENST00000566779 CFAP53Q96M91 514 aa13.61□□□□□ -0.23
GTF3C1-206ENST00000566779 TJP1Q07157 1748 aa13.61□□□□□ -0.23
GTF3C1-206ENST00000566779 PLEKHG2Q9H7P9 1386 aa13.6□□□□□ -0.23
GTF3C1-206ENST00000566779 GNPATO15228 680 aa13.6□□□□□ -0.23
GTF3C1-206ENST00000566779 PELP1Q8IZL8 1130 aaKnown RBP13.6□□□□□ -0.23
GTF3C1-206ENST00000566779 LINC00116Q8NCU8 138 aa13.6□□□□□ -0.23
GTF3C1-206ENST00000566779 ATG3Q9NT62 314 aa13.6□□□□□ -0.23
GTF3C1-206ENST00000566779 C4AP0C0L4 1744 aa13.59□□□□□ -0.23
GTF3C1-206ENST00000566779 MYH14Q7Z406 1995 aaKnown RBP13.59□□□□□ -0.23
GTF3C1-206ENST00000566779 CHD4Q14839 1912 aa13.58□□□□□ -0.23
GTF3C1-206ENST00000566779 ERVV-2B6SEH9 535 aa13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 PTCD1O75127 700 aaKnown RBP13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 ITPK1Q13572 414 aa13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 SLC16A10Q8TF71 515 aa13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 BBXQ8WY36 941 aaPredicted RBP13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 SGIP1Q9BQI5 828 aa13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 ZNF831Q5JPB2 1677 aa13.58□□□□□ -0.24
GTF3C1-206ENST00000566779 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.57□□□□□ -0.24
GTF3C1-206ENST00000566779 RGL2O15211 777 aa13.57□□□□□ -0.24
GTF3C1-206ENST00000566779 AKAP4Q5JQC9 854 aa13.57□□□□□ -0.24
GTF3C1-206ENST00000566779 NFATC2IPQ8NCF5 419 aa13.57□□□□□ -0.24
GTF3C1-206ENST00000566779 SYT17Q9BSW7 474 aa13.57□□□□□ -0.24
GTF3C1-206ENST00000566779 DLG5Q8TDM6 1919 aa13.56□□□□□ -0.24
GTF3C1-206ENST00000566779 PPP2R1AP30153 589 aa13.56□□□□□ -0.24
GTF3C1-206ENST00000566779 MTHFSDQ2M296 383 aaKnown RBP13.56□□□□□ -0.24
GTF3C1-206ENST00000566779 AMIGO3Q86WK7 504 aa13.56□□□□□ -0.24
GTF3C1-206ENST00000566779 ZBTB47Q9UFB7 747 aaPredicted RBP13.56□□□□□ -0.24
GTF3C1-206ENST00000566779 SIPA1L3O60292 1781 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 U2AF1L5P0DN76 240 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 U2AF1Q01081 240 aaKnown RBP eCLIP13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 FLAD1Q8NFF5 587 aa13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 LGR6Q9HBX8 967 aa13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 ADAMTS7Q9UKP4 1686 aa13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 UBR2Q8IWV8 1755 aa13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 MRC1P22897 1456 aa13.55□□□□□ -0.24
GTF3C1-206ENST00000566779 HMGB2P26583 209 aaKnown RBP13.54□□□□□ -0.24
GTF3C1-206ENST00000566779 PRKAR2BP31323 418 aa13.54□□□□□ -0.24
GTF3C1-206ENST00000566779 NUDCQ9Y266 331 aa13.54□□□□□ -0.24
GTF3C1-206ENST00000566779 MAP3K5Q99683 1374 aa13.54□□□□□ -0.24
GTF3C1-206ENST00000566779 RNMTO43148 476 aaKnown RBP13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 YY1P25490 414 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 SLC39A6Q13433 755 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 GPR162Q16538 588 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 NLGN2Q8NFZ4 835 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 SLC4A9Q96Q91 983 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 SLC52A2Q9HAB3 445 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 WWC3Q9ULE0 1092 aa13.53□□□□□ -0.24
GTF3C1-206ENST00000566779 SSFA2P28290 1259 aa13.52□□□□□ -0.25
GTF3C1-206ENST00000566779 RTCBQ9Y3I0 505 aaKnown RBP13.52□□□□□ -0.25
GTF3C1-206ENST00000566779 CICQ96RK0 1608 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms