RNA–Protein interactions for RNA: ENST00000565810.1

CDH1-208, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 282 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-208ENST00000565810 CDCA7LQ96GN5 454 aa10.1□□□□□ -0.79
CDH1-208ENST00000565810 MIS18AQ9NYP9 233 aa10.1□□□□□ -0.79
CDH1-208ENST00000565810 BCL9O00512 1426 aa10.09□□□□□ -0.79
CDH1-208ENST00000565810 PIGBQ92521 554 aa10.09□□□□□ -0.79
CDH1-208ENST00000565810 SMARCC1Q92922 1105 aaPredicted RBP10.09□□□□□ -0.79
CDH1-208ENST00000565810 THSD7AQ9UPZ6 1657 aa10.09□□□□□ -0.79
CDH1-208ENST00000565810 PKD1L3Q7Z443 1732 aa10.08□□□□□ -0.8
CDH1-208ENST00000565810 KCNQ2O43526 872 aa10.08□□□□□ -0.8
CDH1-208ENST00000565810 ZNF790Q6PG37 636 aa10.08□□□□□ -0.8
CDH1-208ENST00000565810 BCL11BQ9C0K0 894 aaPredicted RBP10.08□□□□□ -0.8
CDH1-208ENST00000565810 SPINK5Q9NQ38 1064 aaPredicted RBP10.08□□□□□ -0.8
CDH1-208ENST00000565810 MBIPQ9NS73 344 aa10.08□□□□□ -0.8
CDH1-208ENST00000565810 FANCIQ9NVI1 1328 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 LRRC37A3O60309 1634 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 TRIM37O94972 964 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 SLC39A6Q13433 755 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 DUSP27Q5VZP5 1158 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 TRMT2AQ8IZ69 625 aaKnown RBP10.07□□□□□ -0.8
CDH1-208ENST00000565810 TSR2Q969E8 191 aaKnown RBP10.07□□□□□ -0.8
CDH1-208ENST00000565810 FMNL2Q96PY5 1086 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 CHMP4AQ9BY43 222 aa10.07□□□□□ -0.8
CDH1-208ENST00000565810 CENPBP07199 599 aaPredicted RBP10.06□□□□□ -0.8
CDH1-208ENST00000565810 EIF4A1P60842 406 aaKnown RBP10.06□□□□□ -0.8
CDH1-208ENST00000565810 SF3B2Q13435 895 aaKnown RBP10.06□□□□□ -0.8
CDH1-208ENST00000565810 ATG3Q9NT62 314 aa10.06□□□□□ -0.8
CDH1-208ENST00000565810 ASAP1Q9ULH1 1129 aa10.06□□□□□ -0.8
CDH1-208ENST00000565810 KCNQ3O43525 872 aa10.05□□□□□ -0.8
CDH1-208ENST00000565810 PTCD1O75127 700 aaKnown RBP10.05□□□□□ -0.8
CDH1-208ENST00000565810 CT47B1P0C2W7 299 aaPredicted RBP10.05□□□□□ -0.8
CDH1-208ENST00000565810 HMGB2P26583 209 aaKnown RBP10.05□□□□□ -0.8
CDH1-208ENST00000565810 EXOSC9Q06265 439 aaKnown RBP10.05□□□□□ -0.8
CDH1-208ENST00000565810 RBM42Q9BTD8 480 aaKnown RBP10.05□□□□□ -0.8
CDH1-208ENST00000565810 SNRPA1P09661 255 aaKnown RBP10.04□□□□□ -0.8
CDH1-208ENST00000565810 VSIG10Q8N0Z9 540 aa10.04□□□□□ -0.8
CDH1-208ENST00000565810 ZNF496Q96IT1 587 aaPredicted RBP10.04□□□□□ -0.8
CDH1-208ENST00000565810 TEX13AQ9BXU3 409 aaPredicted RBP10.04□□□□□ -0.8
CDH1-208ENST00000565810 WNK3Q9BYP7 1800 aa10.04□□□□□ -0.8
CDH1-208ENST00000565810 SOS1Q07889 1333 aaPredicted RBP10.04□□□□□ -0.8
CDH1-208ENST00000565810 MRC1P22897 1456 aa10.04□□□□□ -0.8
CDH1-208ENST00000565810 ELL2O00472 640 aaPredicted RBP10.03□□□□□ -0.8
CDH1-208ENST00000565810 GIGYF1O75420 1035 aaPredicted RBP10.03□□□□□ -0.8
CDH1-208ENST00000565810 APBA3O96018 575 aa10.03□□□□□ -0.8
CDH1-208ENST00000565810 HOXB7P09629 217 aa10.03□□□□□ -0.8
CDH1-208ENST00000565810 TWISTNBQ3B726 338 aaPredicted RBP10.03□□□□□ -0.8
CDH1-208ENST00000565810 C8orf58Q8NAV2 365 aa10.03□□□□□ -0.8
CDH1-208ENST00000565810 ZNF428Q96B54 188 aa10.03□□□□□ -0.8
CDH1-208ENST00000565810 PALLDQ8WX93 1383 aa10.02□□□□□ -0.8
CDH1-208ENST00000565810 LOC102724428A0A0B4J2F2 783 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 STARD3NLO95772 234 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 EIF2S2P20042 333 aaKnown RBP10.02□□□□□ -0.81
CDH1-208ENST00000565810 ATP6V1AP38606 617 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 SIK1P57059 783 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 PTF1AQ7RTS3 328 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 CCDC125Q86Z20 511 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 SHANK3Q9BYB0 1731 aa10.02□□□□□ -0.81
CDH1-208ENST00000565810 HEG1Q9ULI3 1381 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 PLSCR1O15162 318 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 VAMP4O75379 141 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 KRT24Q2M2I5 525 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 HDGFL1Q5TGJ6 251 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 CCDC30Q5VVM6 783 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 TSPYL6Q8N831 410 aa10.01□□□□□ -0.81
CDH1-208ENST00000565810 CCNL1Q9UK58 526 aaPredicted RBP10.01□□□□□ -0.81
CDH1-208ENST00000565810 ADAMTS7Q9UKP4 1686 aa10□□□□□ -0.81
CDH1-208ENST00000565810 BAG6P46379 1132 aa10□□□□□ -0.81
CDH1-208ENST00000565810 SLC27A3Q5K4L6 730 aa10□□□□□ -0.81
CDH1-208ENST00000565810 NPM2Q86SE8 214 aaKnown RBP10□□□□□ -0.81
CDH1-208ENST00000565810 STK31Q9BXU1 1019 aa10□□□□□ -0.81
CDH1-208ENST00000565810 ALDH1L2Q3SY69 923 aa9.99□□□□□ -0.81
CDH1-208ENST00000565810 DNAJC10Q8IXB1 793 aa9.99□□□□□ -0.81
CDH1-208ENST00000565810 NECTIN2Q92692 538 aa9.99□□□□□ -0.81
CDH1-208ENST00000565810 RCAN3Q9UKA8 241 aa9.99□□□□□ -0.81
CDH1-208ENST00000565810 USP16Q9Y5T5 823 aa9.99□□□□□ -0.81
CDH1-208ENST00000565810 DLG5Q8TDM6 1919 aa9.99□□□□□ -0.81
CDH1-208ENST00000565810 SCN11AQ9UI33 1791 aa9.98□□□□□ -0.81
CDH1-208ENST00000565810 PRAMEF22A3QJZ6 481 aa9.98□□□□□ -0.81
CDH1-208ENST00000565810 TXNRD1Q16881 649 aa9.98□□□□□ -0.81
CDH1-208ENST00000565810 SLC4A9Q96Q91 983 aa9.98□□□□□ -0.81
CDH1-208ENST00000565810 SMC4Q9NTJ3 1288 aa9.98□□□□□ -0.81
CDH1-208ENST00000565810 DBF4Q9UBU7 674 aaPredicted RBP9.98□□□□□ -0.81
CDH1-208ENST00000565810 EP400Q96L91 3159 aa9.98□□□□□ -0.81
CDH1-208ENST00000565810 RARSP54136 660 aaKnown RBP9.97□□□□□ -0.81
CDH1-208ENST00000565810 EN1Q05925 392 aaPredicted RBP9.97□□□□□ -0.81
CDH1-208ENST00000565810 ERBB4Q15303 1308 aa9.97□□□□□ -0.81
CDH1-208ENST00000565810 DOT1LQ8TEK3 1739 aa9.96□□□□□ -0.81
CDH1-208ENST00000565810 TOGARAM1Q9Y4F4 1720 aa9.96□□□□□ -0.81
CDH1-208ENST00000565810 TCERG1O14776 1098 aaKnown RBP9.96□□□□□ -0.82
CDH1-208ENST00000565810 A1BGP04217 495 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 SLC4A2P04920 1241 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 CYP19A1P11511 503 aaPredicted RBP9.96□□□□□ -0.82
CDH1-208ENST00000565810 CANXP27824 592 aaKnown RBP9.96□□□□□ -0.82
CDH1-208ENST00000565810 ITPK1Q13572 414 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.96□□□□□ -0.82
CDH1-208ENST00000565810 SSH1Q8WYL5 1049 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 DDX21Q9NR30 783 aaKnown RBP eCLIP9.96□□□□□ -0.82
CDH1-208ENST00000565810 HYPKQ9NX55 129 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 NHSQ6T4R5 1651 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 BRWD3Q6RI45 1802 aa9.96□□□□□ -0.82
CDH1-208ENST00000565810 KAT6BQ8WYB5 2073 aa9.95□□□□□ -0.82
CDH1-208ENST00000565810 IPO8O15397 1037 aaKnown RBP9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms