RNA–Protein interactions for RNA: ENST00000564106.1

UBFD1-203, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 2

Gene UBFD1, Length 587 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-203ENST00000564106 ITPK1Q13572 414 aa12.86□□□□□ -0.35
UBFD1-203ENST00000564106 LINC00116Q8NCU8 138 aa12.86□□□□□ -0.35
UBFD1-203ENST00000564106 SLC4A9Q96Q91 983 aa12.86□□□□□ -0.35
UBFD1-203ENST00000564106 ASAP1Q9ULH1 1129 aa12.86□□□□□ -0.35
UBFD1-203ENST00000564106 YY1P25490 414 aa12.85□□□□□ -0.35
UBFD1-203ENST00000564106 NUDCQ9Y266 331 aa12.85□□□□□ -0.35
UBFD1-203ENST00000564106 COL5A3P25940 1745 aaPredicted RBP12.85□□□□□ -0.35
UBFD1-203ENST00000564106 COL3A1P02461 1466 aaPredicted RBP12.85□□□□□ -0.35
UBFD1-203ENST00000564106 KDRP35968 1356 aa12.84□□□□□ -0.35
UBFD1-203ENST00000564106 MAP3K5Q99683 1374 aa12.84□□□□□ -0.35
UBFD1-203ENST00000564106 ADAMTS8Q9UP79 889 aa12.84□□□□□ -0.35
UBFD1-203ENST00000564106 VIRMAQ69YN4 1812 aaKnown RBP12.83□□□□□ -0.35
UBFD1-203ENST00000564106 IL13P35225 146 aa12.83□□□□□ -0.36
UBFD1-203ENST00000564106 PNNQ9H307 717 aaKnown RBP12.83□□□□□ -0.36
UBFD1-203ENST00000564106 ATG3Q9NT62 314 aa12.83□□□□□ -0.36
UBFD1-203ENST00000564106 SPG7Q9UQ90 795 aa12.83□□□□□ -0.36
UBFD1-203ENST00000564106 MYH14Q7Z406 1995 aaKnown RBP12.83□□□□□ -0.36
UBFD1-203ENST00000564106 KLHL34Q8N239 644 aa12.82□□□□□ -0.36
UBFD1-203ENST00000564106 TJP1Q07157 1748 aa12.82□□□□□ -0.36
UBFD1-203ENST00000564106 CHD4Q14839 1912 aa12.82□□□□□ -0.36
UBFD1-203ENST00000564106 SCN11AQ9UI33 1791 aa12.81□□□□□ -0.36
UBFD1-203ENST00000564106 LOC102724428A0A0B4J2F2 783 aa12.81□□□□□ -0.36
UBFD1-203ENST00000564106 SIK1P57059 783 aa12.81□□□□□ -0.36
UBFD1-203ENST00000564106 IFNL2Q8IZJ0 200 aa12.81□□□□□ -0.36
UBFD1-203ENST00000564106 SLC16A10Q8TF71 515 aa12.81□□□□□ -0.36
UBFD1-203ENST00000564106 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.81□□□□□ -0.366e-7■□□□□ 8.1
UBFD1-203ENST00000564106 KIAA1551Q9HCM1 1747 aa12.81□□□□□ -0.36
UBFD1-203ENST00000564106 C4AP0C0L4 1744 aa12.8□□□□□ -0.36
UBFD1-203ENST00000564106 MSH5O43196 834 aa12.8□□□□□ -0.36
UBFD1-203ENST00000564106 PHF14O94880 888 aa12.8□□□□□ -0.36
UBFD1-203ENST00000564106 NCBP3Q53F19 620 aaKnown RBP12.8□□□□□ -0.36
UBFD1-203ENST00000564106 GTF3C3Q9Y5Q9 886 aa12.8□□□□□ -0.36
UBFD1-203ENST00000564106 ZNF831Q5JPB2 1677 aa12.8□□□□□ -0.36
UBFD1-203ENST00000564106 DIAPH1O60610 1272 aaKnown RBP12.79□□□□□ -0.36
UBFD1-203ENST00000564106 NEFLP07196 543 aa12.79□□□□□ -0.36
UBFD1-203ENST00000564106 YBX3P16989 372 aaKnown RBP eCLIP12.79□□□□□ -0.36
UBFD1-203ENST00000564106 SULT6B1Q6IMI4 303 aa12.79□□□□□ -0.36
UBFD1-203ENST00000564106 ZNF530Q6P9A1 599 aaPredicted RBP12.79□□□□□ -0.36
UBFD1-203ENST00000564106 TMOD3Q9NYL9 352 aa12.79□□□□□ -0.36
UBFD1-203ENST00000564106 ADAMTS7Q9UKP4 1686 aa12.78□□□□□ -0.36
UBFD1-203ENST00000564106 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.78□□□□□ -0.36
UBFD1-203ENST00000564106 RUNDC1Q96C34 613 aa12.78□□□□□ -0.36
UBFD1-203ENST00000564106 NEFMP07197 916 aa12.77□□□□□ -0.37
UBFD1-203ENST00000564106 SMARCC1Q92922 1105 aaPredicted RBP12.77□□□□□ -0.37
UBFD1-203ENST00000564106 HMOX1P09601 288 aa12.76□□□□□ -0.37
UBFD1-203ENST00000564106 U2AF1L5P0DN76 240 aaPredicted RBP12.76□□□□□ -0.37
UBFD1-203ENST00000564106 POLD1P28340 1107 aa12.76□□□□□ -0.37
UBFD1-203ENST00000564106 ATP6V1AP38606 617 aa12.76□□□□□ -0.37
UBFD1-203ENST00000564106 U2AF1Q01081 240 aaKnown RBP eCLIP12.76□□□□□ -0.37
UBFD1-203ENST00000564106 ZNF784Q8NCA9 323 aaPredicted RBP12.76□□□□□ -0.37
UBFD1-203ENST00000564106 AK7Q96M32 723 aa12.76□□□□□ -0.37
UBFD1-203ENST00000564106 WWC3Q9ULE0 1092 aa12.76□□□□□ -0.37
UBFD1-203ENST00000564106 PLEKHG2Q9H7P9 1386 aa12.76□□□□□ -0.37
UBFD1-203ENST00000564106 CICQ96RK0 1608 aaPredicted RBP12.76□□□□□ -0.37
UBFD1-203ENST00000564106 GNPATO15228 680 aa12.75□□□□□ -0.37
UBFD1-203ENST00000564106 MRC1P22897 1456 aa12.75□□□□□ -0.37
UBFD1-203ENST00000564106 LGR6Q9HBX8 967 aa12.75□□□□□ -0.37
UBFD1-203ENST00000564106 KCPQ6ZWJ8 1503 aa12.74□□□□□ -0.37
UBFD1-203ENST00000564106 MAPK8IP3Q9UPT6 1336 aa12.74□□□□□ -0.37
UBFD1-203ENST00000564106 U2SURPO15042 1029 aaKnown RBP12.74□□□□□ -0.37
UBFD1-203ENST00000564106 PLEKHO1Q53GL0 409 aaPredicted RBP12.74□□□□□ -0.37
UBFD1-203ENST00000564106 PELP1Q8IZL8 1130 aaKnown RBP12.74□□□□□ -0.37
UBFD1-203ENST00000564106 DCAF5Q96JK2 942 aa12.74□□□□□ -0.37
UBFD1-203ENST00000564106 KIF13BQ9NQT8 1826 aa12.74□□□□□ -0.37
UBFD1-203ENST00000564106 N4BP2Q86UW6 1770 aaPredicted RBP12.74□□□□□ -0.37
UBFD1-203ENST00000564106 ERVV-2B6SEH9 535 aa12.73□□□□□ -0.37
UBFD1-203ENST00000564106 FCHSD2O94868 740 aa12.73□□□□□ -0.37
UBFD1-203ENST00000564106 GOLGA2Q08379 1002 aa12.73□□□□□ -0.37
UBFD1-203ENST00000564106 GPR162Q16538 588 aa12.73□□□□□ -0.37
UBFD1-203ENST00000564106 CCDC27Q2M243 656 aa12.73□□□□□ -0.37
UBFD1-203ENST00000564106 NFATC2IPQ8NCF5 419 aa12.73□□□□□ -0.37
UBFD1-203ENST00000564106 RBM42Q9BTD8 480 aaKnown RBP12.73□□□□□ -0.37
UBFD1-203ENST00000564106 SIPA1L3O60292 1781 aaPredicted RBP12.72□□□□□ -0.37
UBFD1-203ENST00000564106 UBR2Q8IWV8 1755 aa12.72□□□□□ -0.37
UBFD1-203ENST00000564106 ZNF521Q96K83 1311 aa12.72□□□□□ -0.37
UBFD1-203ENST00000564106 APAF1O14727 1248 aa12.72□□□□□ -0.37
UBFD1-203ENST00000564106 SSFA2P28290 1259 aa12.72□□□□□ -0.37
UBFD1-203ENST00000564106 MTHFSDQ2M296 383 aaKnown RBP12.72□□□□□ -0.37
UBFD1-203ENST00000564106 CCDC146Q8IYE0 955 aa12.72□□□□□ -0.37
UBFD1-203ENST00000564106 PTCD1O75127 700 aaKnown RBP12.71□□□□□ -0.37
UBFD1-203ENST00000564106 SLC39A6Q13433 755 aa12.71□□□□□ -0.37
UBFD1-203ENST00000564106 AMOTQ4VCS5 1084 aa12.71□□□□□ -0.37
UBFD1-203ENST00000564106 CABP4P57796 275 aa12.7□□□□□ -0.38
UBFD1-203ENST00000564106 ARHGEF1Q92888 912 aaKnown RBP12.7□□□□□ -0.38
UBFD1-203ENST00000564106 SRP68Q9UHB9 627 aaKnown RBP12.7□□□□□ -0.38
UBFD1-203ENST00000564106 SALL2Q9Y467 1007 aaPredicted RBP12.7□□□□□ -0.38
UBFD1-203ENST00000564106 PXDNLA1KZ92 1463 aa12.7□□□□□ -0.38
UBFD1-203ENST00000564106 BRCA1P38398 1863 aaKnown RBP12.7□□□□□ -0.38
UBFD1-203ENST00000564106 CNTNAP4Q9C0A0 1308 aa12.69□□□□□ -0.38
UBFD1-203ENST00000564106 DCAF8L1A6NGE4 600 aa12.69□□□□□ -0.38
UBFD1-203ENST00000564106 E9PSI1 815 aa12.69□□□□□ -0.38
UBFD1-203ENST00000564106 RNMTO43148 476 aaKnown RBP12.69□□□□□ -0.38
UBFD1-203ENST00000564106 FLAD1Q8NFF5 587 aa12.69□□□□□ -0.38
UBFD1-203ENST00000564106 HSP90AB1P08238 724 aaKnown RBP12.68□□□□□ -0.38
UBFD1-203ENST00000564106 MMP10P09238 476 aa12.68□□□□□ -0.38
UBFD1-203ENST00000564106 GYS1P13807 737 aa12.68□□□□□ -0.38
UBFD1-203ENST00000564106 CRKLP46109 303 aaKnown RBP12.68□□□□□ -0.38
UBFD1-203ENST00000564106 AKAP4Q5JQC9 854 aa12.68□□□□□ -0.38
UBFD1-203ENST00000564106 C1orf141Q5JVX7 400 aa12.68□□□□□ -0.38
UBFD1-203ENST00000564106 ERICH6BQ5W0A0 696 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms