RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 VAC14Q08AM6 782 aa8.8□□□□□ -1
VPS35-205ENST00000563984 PRICKLE2Q7Z3G6 844 aa8.8□□□□□ -1
VPS35-205ENST00000563984 SOX11P35716 441 aa8.79□□□□□ -1
VPS35-205ENST00000563984 GTPBP3Q969Y2 492 aaKnown RBP8.79□□□□□ -1
VPS35-205ENST00000563984 MKL2Q9ULH7 1088 aa8.79□□□□□ -1
VPS35-205ENST00000563984 SHISA8B8ZZ34 492 aa8.78□□□□□ -1
VPS35-205ENST00000563984 MX2P20592 715 aa8.77□□□□□ -1.01
VPS35-205ENST00000563984 POM121Q96HA1 1249 aa8.77□□□□□ -1.01
VPS35-205ENST00000563984 C1QTNF9BB2RNN3 333 aa8.76□□□□□ -1.01
VPS35-205ENST00000563984 RNF144AP50876 292 aaPredicted RBP8.76□□□□□ -1.01
VPS35-205ENST00000563984 ERVK-9P63128 1117 aa8.76□□□□□ -1.01
VPS35-205ENST00000563984 CC2D2BQ6DHV5 1058 aa8.76□□□□□ -1.01
VPS35-205ENST00000563984 RIPOR1Q6ZS17 1223 aa8.76□□□□□ -1.01
VPS35-205ENST00000563984 C1orf229Q6ZS94 237 aaPredicted RBP8.76□□□□□ -1.01
VPS35-205ENST00000563984 PCDHB11Q9Y5F2 797 aa8.76□□□□□ -1.01
VPS35-205ENST00000563984 SEMA3FQ13275 785 aa8.75□□□□□ -1.01
VPS35-205ENST00000563984 SLFNL1Q499Z3 407 aa8.75□□□□□ -1.01
VPS35-205ENST00000563984 OXCT2Q9BYC2 517 aaPredicted RBP8.75□□□□□ -1.01
VPS35-205ENST00000563984 SUV39H2Q9H5I1 410 aa8.75□□□□□ -1.01
VPS35-205ENST00000563984 MEN1O00255 615 aa8.74□□□□□ -1.01
VPS35-205ENST00000563984 SCTRP47872 440 aa8.74□□□□□ -1.01
VPS35-205ENST00000563984 ZMYM1Q5SVZ6 1142 aa8.74□□□□□ -1.01
VPS35-205ENST00000563984 PHTF2Q8N3S3 785 aa8.74□□□□□ -1.01
VPS35-205ENST00000563984 TRERF1Q96PN7 1200 aa8.74□□□□□ -1.01
VPS35-205ENST00000563984 ESF1Q9H501 851 aaKnown RBP8.74□□□□□ -1.01
VPS35-205ENST00000563984 ATP5J2-PTCD1G3V325 749 aa8.73□□□□□ -1.01
VPS35-205ENST00000563984 H7C1W4 665 aa8.73□□□□□ -1.01
VPS35-205ENST00000563984 CD163Q86VB7 1156 aa8.73□□□□□ -1.01
VPS35-205ENST00000563984 SEMA6BQ9H3T3 888 aa8.73□□□□□ -1.01
VPS35-205ENST00000563984 NSFL1CQ9UNZ2 370 aaKnown RBP8.73□□□□□ -1.01
VPS35-205ENST00000563984 KRTAP4-8A0A0G2JLE6 195 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 HOXB4P17483 251 aaPredicted RBP8.72□□□□□ -1.01
VPS35-205ENST00000563984 GRIN2CQ14957 1233 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 LINC00114Q6XXX2 140 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 CYP2U1Q7Z449 544 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 RNF135Q8IUD6 432 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 CCDC85AQ96PX6 553 aaPredicted RBP8.72□□□□□ -1.01
VPS35-205ENST00000563984 CHIC2Q9UKJ5 165 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 DYRK1BQ9Y463 629 aa8.72□□□□□ -1.01
VPS35-205ENST00000563984 TRAK2O60296 914 aa8.71□□□□□ -1.02
VPS35-205ENST00000563984 MYCP01106 439 aaPredicted RBP8.71□□□□□ -1.02
VPS35-205ENST00000563984 A0A1W2PRU2 124 aa8.7□□□□□ -1.02
VPS35-205ENST00000563984 MAP2K3P46734 347 aa8.7□□□□□ -1.02
VPS35-205ENST00000563984 USP4Q13107 963 aa8.7□□□□□ -1.02
VPS35-205ENST00000563984 CDCA7Q9BWT1 371 aaPredicted RBP8.7□□□□□ -1.02
VPS35-205ENST00000563984 ALG2Q9H553 416 aa8.7□□□□□ -1.02
VPS35-205ENST00000563984 RRAGCQ9HB90 399 aa8.7□□□□□ -1.02
VPS35-205ENST00000563984 DOLKQ9UPQ8 538 aa8.7□□□□□ -1.02
VPS35-205ENST00000563984 BTBD11A6QL63 1104 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 CHRNA4P43681 627 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 MAP7D1Q3KQU3 841 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 SIRT1Q96EB6 747 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 GAS2L1Q99501 681 aaPredicted RBP8.69□□□□□ -1.02
VPS35-205ENST00000563984 OSBPL3Q9H4L5 887 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 ARHGEF10LQ9HCE6 1279 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 RAB6BQ9NRW1 208 aa8.69□□□□□ -1.02
VPS35-205ENST00000563984 KRTAP19-1Q8IUB9 90 aa8.68□□□□□ -1.02
VPS35-205ENST00000563984 EDARADDQ8WWZ3 215 aa8.68□□□□□ -1.02
VPS35-205ENST00000563984 CLUAP1Q96AJ1 413 aa8.68□□□□□ -1.02
VPS35-205ENST00000563984 KLRG1Q96E93 195 aa8.68□□□□□ -1.02
VPS35-205ENST00000563984 GNRH1P01148 92 aa8.67□□□□□ -1.02
VPS35-205ENST00000563984 GPC1P35052 558 aa8.67□□□□□ -1.02
VPS35-205ENST00000563984 DOC2BQ14184 412 aa8.67□□□□□ -1.02
VPS35-205ENST00000563984 TSGA10IPQ3SY00 556 aa8.67□□□□□ -1.02
VPS35-205ENST00000563984 FOXD4L6Q3SYB3 417 aaPredicted RBP8.67□□□□□ -1.02
VPS35-205ENST00000563984 FOXD4L3Q6VB84 417 aaPredicted RBP8.67□□□□□ -1.02
VPS35-205ENST00000563984 NLRP3Q96P20 1036 aa8.67□□□□□ -1.02
VPS35-205ENST00000563984 A6NJR5 290 aa8.66□□□□□ -1.02
VPS35-205ENST00000563984 POU4F2Q12837 409 aa8.66□□□□□ -1.02
VPS35-205ENST00000563984 SLC27A3Q5K4L6 730 aa8.66□□□□□ -1.02
VPS35-205ENST00000563984 PROSER2Q86WR7 435 aaPredicted RBP8.66□□□□□ -1.02
VPS35-205ENST00000563984 FNBP4Q8N3X1 1017 aaPredicted RBP8.66□□□□□ -1.02
VPS35-205ENST00000563984 PLPP7Q8NBV4 271 aa8.66□□□□□ -1.02
VPS35-205ENST00000563984 CLN3Q13286 438 aa8.65□□□□□ -1.02
VPS35-205ENST00000563984 NFATC2IPQ8NCF5 419 aa8.65□□□□□ -1.02
VPS35-205ENST00000563984 POM121CA8CG34 1229 aa8.64□□□□□ -1.03
VPS35-205ENST00000563984 LZTS3O60299 673 aaPredicted RBP8.64□□□□□ -1.03
VPS35-205ENST00000563984 THBS1P07996 1170 aa8.64□□□□□ -1.03
VPS35-205ENST00000563984 OXLD1Q5BKU9 147 aa8.64□□□□□ -1.03
VPS35-205ENST00000563984 CFHR5Q9BXR6 569 aa8.64□□□□□ -1.03
VPS35-205ENST00000563984 NUCKS1Q9H1E3 243 aaKnown RBP8.64□□□□□ -1.03
VPS35-205ENST00000563984 STAU1O95793 577 aaKnown RBP8.63□□□□□ -1.03
VPS35-205ENST00000563984 HDGFL1Q5TGJ6 251 aa8.63□□□□□ -1.03
VPS35-205ENST00000563984 GDF2Q9UK05 429 aaPredicted RBP8.63□□□□□ -1.03
VPS35-205ENST00000563984 PIK3CDO00329 1044 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 GNB5O14775 395 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 SKIP12755 728 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 ESCO1Q5FWF5 840 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 ADAMTS19Q8TE59 1207 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 CNKSR1Q969H4 720 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 ESYT1Q9BSJ8 1104 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 GRIP2Q9C0E4 1043 aa8.61□□□□□ -1.03
VPS35-205ENST00000563984 SCO2A0A1W2PP80 73 aa8.6□□□□□ -1.03
VPS35-205ENST00000563984 IL2RAP01589 272 aa8.6□□□□□ -1.03
VPS35-205ENST00000563984 PHKA2P46019 1235 aa8.6□□□□□ -1.03
VPS35-205ENST00000563984 EML3Q32P44 896 aa8.6□□□□□ -1.03
VPS35-205ENST00000563984 NBPF10Q6P3W6 841 aaKnown RBP8.6□□□□□ -1.03
VPS35-205ENST00000563984 NBPF15Q8N660 670 aa8.6□□□□□ -1.03
VPS35-205ENST00000563984 XAGE2Q96GT9 111 aa8.6□□□□□ -1.03
VPS35-205ENST00000563984 F11P03951 625 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms