RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SLC16A10Q8TF71 515 aa17.87■□□□□ 0.45
CLK3-213ENST00000563842 NEFMP07197 916 aa17.86■□□□□ 0.45
CLK3-213ENST00000563842 PRKAR2BP31323 418 aa17.86■□□□□ 0.45
CLK3-213ENST00000563842 NFATC2IPQ8NCF5 419 aa17.86■□□□□ 0.45
CLK3-213ENST00000563842 MTFR1LQ9H019 292 aa17.86■□□□□ 0.45
CLK3-213ENST00000563842 RSPH6AQ9H0K4 717 aa17.86■□□□□ 0.45
CLK3-213ENST00000563842 RNMTO43148 476 aaKnown RBP17.85■□□□□ 0.45
CLK3-213ENST00000563842 C4BP0C0L5 1744 aa17.85■□□□□ 0.45
CLK3-213ENST00000563842 FLAD1Q8NFF5 587 aa17.85■□□□□ 0.45
CLK3-213ENST00000563842 PNNQ9H307 717 aaKnown RBP17.85■□□□□ 0.45
CLK3-213ENST00000563842 SLC52A2Q9HAB3 445 aa17.85■□□□□ 0.45
CLK3-213ENST00000563842 PPP1R1BQ9UD71 204 aaPredicted RBP17.85■□□□□ 0.45
CLK3-213ENST00000563842 ADAMTS7Q9UKP4 1686 aa17.85■□□□□ 0.45
CLK3-213ENST00000563842 MYBBP1AQ9BQG0 1328 aaKnown RBP17.84■□□□□ 0.45
CLK3-213ENST00000563842 GNAT3A8MTJ3 354 aa17.84■□□□□ 0.45
CLK3-213ENST00000563842 ZBTB7AO95365 584 aa17.84■□□□□ 0.45
CLK3-213ENST00000563842 ATP6V1AP38606 617 aa17.84■□□□□ 0.45
CLK3-213ENST00000563842 MAP3K5Q99683 1374 aa17.83■□□□□ 0.45
CLK3-213ENST00000563842 PNPLA7Q6ZV29 1317 aa17.83■□□□□ 0.44
CLK3-213ENST00000563842 AK7Q96M32 723 aa17.83■□□□□ 0.44
CLK3-213ENST00000563842 RBM42Q9BTD8 480 aaKnown RBP17.83■□□□□ 0.44
CLK3-213ENST00000563842 PDGFDQ9GZP0 370 aaPredicted RBP17.83■□□□□ 0.44
CLK3-213ENST00000563842 LGR6Q9HBX8 967 aa17.83■□□□□ 0.44
CLK3-213ENST00000563842 UBR3Q6ZT12 1888 aa17.83■□□□□ 0.44
CLK3-213ENST00000563842 MRC1P22897 1456 aa17.82■□□□□ 0.44
CLK3-213ENST00000563842 ZNF316A6NFI3 1004 aaPredicted RBP17.81■□□□□ 0.44
CLK3-213ENST00000563842 ATF5Q9Y2D1 282 aaPredicted RBP17.81■□□□□ 0.44
CLK3-213ENST00000563842 MSH5O43196 834 aa17.8■□□□□ 0.44
CLK3-213ENST00000563842 TEFQ10587 303 aa17.8■□□□□ 0.44
CLK3-213ENST00000563842 PHACTR3Q96KR7 559 aa17.8■□□□□ 0.44
CLK3-213ENST00000563842 COL5A3P25940 1745 aaPredicted RBP17.8■□□□□ 0.44
CLK3-213ENST00000563842 RTF1Q92541 710 aaKnown RBP17.79■□□□□ 0.44
CLK3-213ENST00000563842 SIPA1L3O60292 1781 aaPredicted RBP17.79■□□□□ 0.44
CLK3-213ENST00000563842 DLG5Q8TDM6 1919 aa17.78■□□□□ 0.44
CLK3-213ENST00000563842 COL24A1Q17RW2 1714 aa17.78■□□□□ 0.44
CLK3-213ENST00000563842 PTCD1O75127 700 aaKnown RBP17.78■□□□□ 0.44
CLK3-213ENST00000563842 ITPK1Q13572 414 aa17.78■□□□□ 0.44
CLK3-213ENST00000563842 LINC00116Q8NCU8 138 aa17.78■□□□□ 0.44
CLK3-213ENST00000563842 PRKRIP1Q9H875 184 aaPredicted RBP17.78■□□□□ 0.44
CLK3-213ENST00000563842 CICQ96RK0 1608 aaPredicted RBP17.77■□□□□ 0.44
CLK3-213ENST00000563842 HTATSF1O43719 755 aaKnown RBP17.77■□□□□ 0.44
CLK3-213ENST00000563842 SSFA2P28290 1259 aa17.77■□□□□ 0.44
CLK3-213ENST00000563842 POLD1P28340 1107 aa17.77■□□□□ 0.44
CLK3-213ENST00000563842 PTGER2P43116 358 aa17.77■□□□□ 0.44
CLK3-213ENST00000563842 RC3H1Q5TC82 1133 aaKnown RBP17.77■□□□□ 0.44
CLK3-213ENST00000563842 COL23A1Q86Y22 540 aaPredicted RBP17.77■□□□□ 0.44
CLK3-213ENST00000563842 IL17REQ8NFR9 667 aa17.77■□□□□ 0.44
CLK3-213ENST00000563842 TTC5Q8N0Z6 440 aa17.76■□□□□ 0.43
CLK3-213ENST00000563842 MYH14Q7Z406 1995 aaKnown RBP17.76■□□□□ 0.43
CLK3-213ENST00000563842 MAPK8IP3Q9UPT6 1336 aa17.75■□□□□ 0.43
CLK3-213ENST00000563842 GNPATO15228 680 aa17.75■□□□□ 0.43
CLK3-213ENST00000563842 SLC4A9Q96Q91 983 aa17.75■□□□□ 0.43
CLK3-213ENST00000563842 UBR2Q8IWV8 1755 aa17.75■□□□□ 0.43
CLK3-213ENST00000563842 CEMIPQ8WUJ3 1361 aa17.75■□□□□ 0.43
CLK3-213ENST00000563842 CNTNAP4Q9C0A0 1308 aa17.74■□□□□ 0.43
CLK3-213ENST00000563842 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.74■□□□□ 0.43
CLK3-213ENST00000563842 DCAF8L1A6NGE4 600 aa17.74■□□□□ 0.43
CLK3-213ENST00000563842 SLC39A6Q13433 755 aa17.74■□□□□ 0.43
CLK3-213ENST00000563842 ARXQ96QS3 562 aa17.74■□□□□ 0.43
CLK3-213ENST00000563842 SGIP1Q9BQI5 828 aa17.74■□□□□ 0.43
CLK3-213ENST00000563842 RTCBQ9Y3I0 505 aaKnown RBP17.74■□□□□ 0.43
CLK3-213ENST00000563842 TJP1Q07157 1748 aa17.74■□□□□ 0.43
CLK3-213ENST00000563842 PHF14O94880 888 aa17.73■□□□□ 0.43
CLK3-213ENST00000563842 WDR43Q15061 677 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLK3-213ENST00000563842 VSIG10Q8N0Z9 540 aa17.73■□□□□ 0.43
CLK3-213ENST00000563842 PLEKHF1Q96S99 279 aa17.73■□□□□ 0.43
CLK3-213ENST00000563842 ADRA2BP18089 450 aa17.72■□□□□ 0.43
CLK3-213ENST00000563842 RPS6KA4O75676 772 aa17.71■□□□□ 0.43
CLK3-213ENST00000563842 TRAPPC3LQ5T215 181 aa17.71■□□□□ 0.43
CLK3-213ENST00000563842 ZNF790Q6PG37 636 aa17.71■□□□□ 0.43
CLK3-213ENST00000563842 KCPQ6ZWJ8 1503 aa17.71■□□□□ 0.43
CLK3-213ENST00000563842 BTBD11A6QL63 1104 aa17.7■□□□□ 0.42
CLK3-213ENST00000563842 CRKLP46109 303 aaKnown RBP17.7■□□□□ 0.42
CLK3-213ENST00000563842 NFE2L2Q16236 605 aa17.7■□□□□ 0.42
CLK3-213ENST00000563842 TEX13AQ9BXU3 409 aaPredicted RBP17.7■□□□□ 0.42
CLK3-213ENST00000563842 SENP3-EIF4A1A0A087X0R7 540 aa17.69■□□□□ 0.42
CLK3-213ENST00000563842 MCM10Q7L590 875 aa17.69■□□□□ 0.42
CLK3-213ENST00000563842 DNAJC10Q8IXB1 793 aa17.69■□□□□ 0.42
CLK3-213ENST00000563842 STARD3NLO95772 234 aa17.68■□□□□ 0.42
CLK3-213ENST00000563842 FMNL2Q96PY5 1086 aa17.68■□□□□ 0.42
CLK3-213ENST00000563842 RFC4P35249 363 aa17.67■□□□□ 0.42
CLK3-213ENST00000563842 TAF7Q15545 349 aaPredicted RBP17.67■□□□□ 0.42
CLK3-213ENST00000563842 AMIGO3Q86WK7 504 aa17.67■□□□□ 0.42
CLK3-213ENST00000563842 FHDC1Q9C0D6 1143 aaPredicted RBP17.67■□□□□ 0.42
CLK3-213ENST00000563842 CCDC87Q9NVE4 849 aa17.67■□□□□ 0.42
CLK3-213ENST00000563842 HEG1Q9ULI3 1381 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 ANP32CO43423 234 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 CYP19A1P11511 503 aaPredicted RBP17.66■□□□□ 0.42
CLK3-213ENST00000563842 LMOD3Q0VAK6 560 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 DCTN1Q14203 1278 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 MSL1Q68DK7 614 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 PNISRQ8TF01 805 aaKnown RBP17.66■□□□□ 0.42
CLK3-213ENST00000563842 ARHGEF1Q92888 912 aaKnown RBP17.66■□□□□ 0.42
CLK3-213ENST00000563842 ZNF496Q96IT1 587 aaPredicted RBP17.66■□□□□ 0.42
CLK3-213ENST00000563842 SYT17Q9BSW7 474 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 C4AP0C0L4 1744 aa17.66■□□□□ 0.42
CLK3-213ENST00000563842 SMIM5Q71RC9 77 aa17.65■□□□□ 0.42
CLK3-213ENST00000563842 NLGN1Q8N2Q7 840 aa17.65■□□□□ 0.42
CLK3-213ENST00000563842 RUNDC1Q96C34 613 aa17.65■□□□□ 0.42
CLK3-213ENST00000563842 RIPK4P57078 832 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms