RNA–Protein interactions for RNA: ENST00000563455.1

SMPD3-205, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-205ENST00000563455 IL2RBP14784 551 aa17.79■□□□□ 0.44
SMPD3-205ENST00000563455 EXOSC9Q06265 439 aaKnown RBP17.79■□□□□ 0.44
SMPD3-205ENST00000563455 PLEKHO1Q53GL0 409 aaPredicted RBP17.79■□□□□ 0.44
SMPD3-205ENST00000563455 CHMP4BQ9H444 224 aaKnown RBP17.79■□□□□ 0.44
SMPD3-205ENST00000563455 ERBB3P21860 1342 aa17.78■□□□□ 0.44
SMPD3-205ENST00000563455 ANKRD24Q8TF21 1146 aa17.78■□□□□ 0.44
SMPD3-205ENST00000563455 CHL1O00533 1208 aa17.77■□□□□ 0.44
SMPD3-205ENST00000563455 MTHFSDQ2M296 383 aaKnown RBP17.77■□□□□ 0.44
SMPD3-205ENST00000563455 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.77■□□□□ 0.44
SMPD3-205ENST00000563455 LTN1O94822 1766 aa17.76■□□□□ 0.43
SMPD3-205ENST00000563455 ZKSCAN2Q63HK3 967 aa17.76■□□□□ 0.43
SMPD3-205ENST00000563455 ARHGAP45Q92619 1136 aa17.76■□□□□ 0.43
SMPD3-205ENST00000563455 STK32BQ9NY57 414 aa17.76■□□□□ 0.43
SMPD3-205ENST00000563455 COL18A1P39060 1754 aa17.75■□□□□ 0.43
SMPD3-205ENST00000563455 BCAR3O75815 825 aa17.74■□□□□ 0.43
SMPD3-205ENST00000563455 TXNRD1Q16881 649 aa17.74■□□□□ 0.43
SMPD3-205ENST00000563455 NBPF6Q5VWK0 638 aa17.74■□□□□ 0.43
SMPD3-205ENST00000563455 TSR2Q969E8 191 aaKnown RBP17.74■□□□□ 0.43
SMPD3-205ENST00000563455 LTV1Q96GA3 475 aaPredicted RBP17.74■□□□□ 0.43
SMPD3-205ENST00000563455 NBPF4Q96M43 638 aa17.74■□□□□ 0.43
SMPD3-205ENST00000563455 SMC4Q9NTJ3 1288 aa17.74■□□□□ 0.43
SMPD3-205ENST00000563455 MAP3K5Q99683 1374 aa17.74■□□□□ 0.43
SMPD3-205ENST00000563455 AKAP4Q5JQC9 854 aa17.73■□□□□ 0.43
SMPD3-205ENST00000563455 EXOC6Q8TAG9 804 aa17.73■□□□□ 0.43
SMPD3-205ENST00000563455 MBIPQ9NS73 344 aa17.73■□□□□ 0.43
SMPD3-205ENST00000563455 LAS1LQ9Y4W2 734 aaKnown RBP17.72■□□□□ 0.43
SMPD3-205ENST00000563455 PLIN1O60240 522 aa17.71■□□□□ 0.43
SMPD3-205ENST00000563455 VAMP4O75379 141 aa17.71■□□□□ 0.43
SMPD3-205ENST00000563455 TAF7Q15545 349 aaPredicted RBP17.71■□□□□ 0.43
SMPD3-205ENST00000563455 PROM2Q8N271 834 aa17.71■□□□□ 0.43
SMPD3-205ENST00000563455 CRBNQ96SW2 442 aa17.71■□□□□ 0.43
SMPD3-205ENST00000563455 TNS2Q63HR2 1409 aa17.71■□□□□ 0.43
SMPD3-205ENST00000563455 LRRC37A3O60309 1634 aa17.7■□□□□ 0.42
SMPD3-205ENST00000563455 HMGB2P26583 209 aaKnown RBP17.7■□□□□ 0.42
SMPD3-205ENST00000563455 SLC15A2Q16348 729 aa17.7■□□□□ 0.42
SMPD3-205ENST00000563455 TWISTNBQ3B726 338 aaPredicted RBP17.7■□□□□ 0.42
SMPD3-205ENST00000563455 C1orf141Q5JVX7 400 aa17.7■□□□□ 0.42
SMPD3-205ENST00000563455 RAPGEF4Q8WZA2 1011 aa17.7■□□□□ 0.42
SMPD3-205ENST00000563455 ATF7IPQ6VMQ6 1270 aa17.69■□□□□ 0.42
SMPD3-205ENST00000563455 PTF1AQ7RTS3 328 aa17.69■□□□□ 0.42
SMPD3-205ENST00000563455 FTSJ3Q8IY81 847 aaKnown RBP17.69■□□□□ 0.42
SMPD3-205ENST00000563455 SSH1Q8WYL5 1049 aa17.69■□□□□ 0.42
SMPD3-205ENST00000563455 FRAT1Q92837 279 aaPredicted RBP17.69■□□□□ 0.42
SMPD3-205ENST00000563455 SPG7Q9UQ90 795 aa17.69■□□□□ 0.42
SMPD3-205ENST00000563455 RREB1Q92766 1687 aa17.68■□□□□ 0.42
SMPD3-205ENST00000563455 FAM208AQ9UK61 1670 aaKnown RBP17.68■□□□□ 0.42
SMPD3-205ENST00000563455 B4GALNT3Q6L9W6 998 aa17.68■□□□□ 0.42
SMPD3-205ENST00000563455 DZIP1LQ8IYY4 767 aaKnown RBP17.68■□□□□ 0.42
SMPD3-205ENST00000563455 CEMIPQ8WUJ3 1361 aa17.67■□□□□ 0.42
SMPD3-205ENST00000563455 HSP90AB1P08238 724 aaKnown RBP17.67■□□□□ 0.42
SMPD3-205ENST00000563455 HOXB7P09629 217 aa17.67■□□□□ 0.42
SMPD3-205ENST00000563455 TATP17735 454 aaPredicted RBP17.67■□□□□ 0.42
SMPD3-205ENST00000563455 MCM10Q7L590 875 aa17.67■□□□□ 0.42
SMPD3-205ENST00000563455 ACSBG1Q96GR2 724 aa17.67■□□□□ 0.42
SMPD3-205ENST00000563455 API5Q9BZZ5 524 aaKnown RBP17.67■□□□□ 0.42
SMPD3-205ENST00000563455 DDX19BQ9UMR2 479 aa17.67■□□□□ 0.42
SMPD3-205ENST00000563455 CENPQQ7L2Z9 268 aaPredicted RBP17.66■□□□□ 0.42
SMPD3-205ENST00000563455 DDX54Q8TDD1 881 aaKnown RBP17.66■□□□□ 0.42
SMPD3-205ENST00000563455 THUMPD2Q9BTF0 503 aaKnown RBP17.66■□□□□ 0.42
SMPD3-205ENST00000563455 TSPYL4Q9UJ04 414 aa17.66■□□□□ 0.42
SMPD3-205ENST00000563455 RGPD3A6NKT7 1758 aaPredicted RBP17.66■□□□□ 0.42
SMPD3-205ENST00000563455 RGPD4Q7Z3J3 1758 aa17.66■□□□□ 0.42
SMPD3-205ENST00000563455 DLG5Q8TDM6 1919 aa17.65■□□□□ 0.42
SMPD3-205ENST00000563455 NUP188Q5SRE5 1749 aa17.65■□□□□ 0.42
SMPD3-205ENST00000563455 SLC27A3Q5K4L6 730 aa17.65■□□□□ 0.42
SMPD3-205ENST00000563455 ANO8Q9HCE9 1232 aaPredicted RBP17.65■□□□□ 0.42
SMPD3-205ENST00000563455 DCTN1Q14203 1278 aa17.64■□□□□ 0.41
SMPD3-205ENST00000563455 MVPQ14764 893 aaKnown RBP17.64■□□□□ 0.41
SMPD3-205ENST00000563455 ZNF530Q6P9A1 599 aaPredicted RBP17.64■□□□□ 0.41
SMPD3-205ENST00000563455 CLUAP1Q96AJ1 413 aa17.64■□□□□ 0.41
SMPD3-205ENST00000563455 MTFR1LQ9H019 292 aa17.64■□□□□ 0.41
SMPD3-205ENST00000563455 TEFQ10587 303 aa17.63■□□□□ 0.41
SMPD3-205ENST00000563455 C20orf194Q5TEA3 1177 aa17.63■□□□□ 0.41
SMPD3-205ENST00000563455 IL17REQ8NFR9 667 aa17.63■□□□□ 0.41
SMPD3-205ENST00000563455 ZCRB1Q8TBF4 217 aaKnown RBP17.63■□□□□ 0.41
SMPD3-205ENST00000563455 PTPRCP08575 1304 aa17.63■□□□□ 0.41
SMPD3-205ENST00000563455 ZBTB7AO95365 584 aa17.62■□□□□ 0.41
SMPD3-205ENST00000563455 MRPL50Q8N5N7 158 aaKnown RBP17.62■□□□□ 0.41
SMPD3-205ENST00000563455 USHBP1Q8N6Y0 703 aa17.62■□□□□ 0.41
SMPD3-205ENST00000563455 NOB1Q9ULX3 412 aaKnown RBP17.62■□□□□ 0.41
SMPD3-205ENST00000563455 YY1P25490 414 aa17.61■□□□□ 0.41
SMPD3-205ENST00000563455 C8orf58Q8NAV2 365 aa17.61■□□□□ 0.41
SMPD3-205ENST00000563455 TRIM27P14373 513 aa17.6■□□□□ 0.41
SMPD3-205ENST00000563455 CCDC30Q5VVM6 783 aa17.6■□□□□ 0.41
SMPD3-205ENST00000563455 IFNL2Q8IZJ0 200 aa17.6■□□□□ 0.41
SMPD3-205ENST00000563455 SLC16A10Q8TF71 515 aa17.6■□□□□ 0.41
SMPD3-205ENST00000563455 SYTL4Q96C24 671 aaPredicted RBP17.6■□□□□ 0.41
SMPD3-205ENST00000563455 STK31Q9BXU1 1019 aa17.6■□□□□ 0.41
SMPD3-205ENST00000563455 ATF5Q9Y2D1 282 aaPredicted RBP17.6■□□□□ 0.41
SMPD3-205ENST00000563455 RGPD5Q99666 1765 aa17.6■□□□□ 0.41
SMPD3-205ENST00000563455 SBF2Q86WG5 1849 aa17.59■□□□□ 0.41
SMPD3-205ENST00000563455 WNK3Q9BYP7 1800 aa17.58■□□□□ 0.41
SMPD3-205ENST00000563455 RNMTO43148 476 aaKnown RBP17.58■□□□□ 0.4
SMPD3-205ENST00000563455 TSPYL6Q8N831 410 aa17.58■□□□□ 0.4
SMPD3-205ENST00000563455 PANK1Q8TE04 598 aa17.58■□□□□ 0.4
SMPD3-205ENST00000563455 BCL2L13Q9BXK5 485 aa17.58■□□□□ 0.4
SMPD3-205ENST00000563455 RWDD1Q9H446 243 aaPredicted RBP17.58■□□□□ 0.4
SMPD3-205ENST00000563455 COG6Q9Y2V7 657 aa17.58■□□□□ 0.4
SMPD3-205ENST00000563455 TCERG1O14776 1098 aaKnown RBP17.57■□□□□ 0.4
SMPD3-205ENST00000563455 PTGER2P43116 358 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms