RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 BRINP3Q76B58 766 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 IP6K1Q92551 441 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 LTBP4Q8N2S1 1624 aa12.62□□□□□ -0.39
UBFD1-202ENST00000563366 GCP02774 474 aa12.61□□□□□ -0.39
UBFD1-202ENST00000563366 HMOX1P09601 288 aa12.61□□□□□ -0.39
UBFD1-202ENST00000563366 RIPK4P57078 832 aa12.61□□□□□ -0.39
UBFD1-202ENST00000563366 FOXK1P85037 733 aa12.61□□□□□ -0.39
UBFD1-202ENST00000563366 METRNQ9UJH8 293 aa12.61□□□□□ -0.39
UBFD1-202ENST00000563366 SPATA31A3Q5VYP0 1347 aa12.61□□□□□ -0.39
UBFD1-202ENST00000563366 ABCA3Q99758 1704 aa12.6□□□□□ -0.39
UBFD1-202ENST00000563366 SEMA3EO15041 775 aa12.6□□□□□ -0.39
UBFD1-202ENST00000563366 CT47B1P0C2W7 299 aaPredicted RBP12.6□□□□□ -0.39
UBFD1-202ENST00000563366 XPCQ01831 940 aaPredicted RBP12.6□□□□□ -0.39
UBFD1-202ENST00000563366 SULT6B1Q6IMI4 303 aa12.6□□□□□ -0.39
UBFD1-202ENST00000563366 RRP7AQ9Y3A4 280 aaKnown RBP12.6□□□□□ -0.39
UBFD1-202ENST00000563366 C2orf72A6NCS6 295 aa12.59□□□□□ -0.39
UBFD1-202ENST00000563366 ARHGEF25Q86VW2 580 aa12.59□□□□□ -0.39
UBFD1-202ENST00000563366 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.59□□□□□ -0.39
UBFD1-202ENST00000563366 SOS2Q07890 1332 aaPredicted RBP12.59□□□□□ -0.39
UBFD1-202ENST00000563366 ROBO1Q9Y6N7 1651 aa12.58□□□□□ -0.4
UBFD1-202ENST00000563366 POTEIP0CG38 1075 aa12.58□□□□□ -0.4
UBFD1-202ENST00000563366 RRP1P56182 461 aaKnown RBP12.58□□□□□ -0.4
UBFD1-202ENST00000563366 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.58□□□□□ -0.4
UBFD1-202ENST00000563366 RGPD5Q99666 1765 aa12.58□□□□□ -0.4
UBFD1-202ENST00000563366 AHDC1Q5TGY3 1603 aaPredicted RBP12.58□□□□□ -0.4
UBFD1-202ENST00000563366 PLEKHG2Q9H7P9 1386 aa12.57□□□□□ -0.4
UBFD1-202ENST00000563366 TESPA1A2RU30 521 aaPredicted RBP12.57□□□□□ -0.4
UBFD1-202ENST00000563366 CPDO75976 1380 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 COL18A1P39060 1754 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 POTEFA5A3E0 1075 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 KIF3CO14782 793 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 PLPP6Q8IY26 295 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 GAS2L2Q8NHY3 880 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 RGPD2P0DJD1 1756 aa12.56□□□□□ -0.4
UBFD1-202ENST00000563366 NCAPD2Q15021 1401 aa12.55□□□□□ -0.4
UBFD1-202ENST00000563366 LMO7Q8WWI1 1683 aa12.55□□□□□ -0.4
UBFD1-202ENST00000563366 PHACTR3Q96KR7 559 aa12.55□□□□□ -0.4
UBFD1-202ENST00000563366 EYA1Q99502 592 aa12.55□□□□□ -0.4
UBFD1-202ENST00000563366 LRRC37A3O60309 1634 aa12.55□□□□□ -0.4
UBFD1-202ENST00000563366 GNAI1P63096 354 aa12.54□□□□□ -0.4
UBFD1-202ENST00000563366 SMYD5Q6GMV2 418 aa12.54□□□□□ -0.4
UBFD1-202ENST00000563366 AEBP1Q8IUX7 1158 aa12.54□□□□□ -0.4
UBFD1-202ENST00000563366 COL22A1Q8NFW1 1626 aaPredicted RBP12.54□□□□□ -0.4
UBFD1-202ENST00000563366 HTATSF1O43719 755 aaKnown RBP12.53□□□□□ -0.4
UBFD1-202ENST00000563366 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
UBFD1-202ENST00000563366 EMILIN3Q9NT22 766 aa12.53□□□□□ -0.4
UBFD1-202ENST00000563366 IFT57Q9NWB7 429 aa12.53□□□□□ -0.4
UBFD1-202ENST00000563366 FANCIQ9NVI1 1328 aa12.53□□□□□ -0.4
UBFD1-202ENST00000563366 ZBTB7CA1YPR0 619 aa12.52□□□□□ -0.41
UBFD1-202ENST00000563366 DPYSL4O14531 572 aa12.52□□□□□ -0.41
UBFD1-202ENST00000563366 C3orf67Q6ZVT6 689 aa12.52□□□□□ -0.41
UBFD1-202ENST00000563366 RTF1Q92541 710 aaKnown RBP12.52□□□□□ -0.41
UBFD1-202ENST00000563366 DDX17Q92841 729 aaKnown RBP12.52□□□□□ -0.41
UBFD1-202ENST00000563366 PPP4R2Q9NY27 417 aa12.52□□□□□ -0.41
UBFD1-202ENST00000563366 PHLPP1O60346 1717 aa12.51□□□□□ -0.41
UBFD1-202ENST00000563366 TMEM92Q6UXU6 159 aa12.51□□□□□ -0.41
UBFD1-202ENST00000563366 ANKRD24Q8TF21 1146 aa12.51□□□□□ -0.41
UBFD1-202ENST00000563366 ERBB3P21860 1342 aa12.51□□□□□ -0.41
UBFD1-202ENST00000563366 VIRMAQ69YN4 1812 aaKnown RBP12.51□□□□□ -0.41
UBFD1-202ENST00000563366 AMOTQ4VCS5 1084 aa12.5□□□□□ -0.41
UBFD1-202ENST00000563366 LRRC59Q96AG4 307 aaKnown RBP12.5□□□□□ -0.41
UBFD1-202ENST00000563366 LTV1Q96GA3 475 aaPredicted RBP12.5□□□□□ -0.41
UBFD1-202ENST00000563366 MAP3K5Q99683 1374 aa12.5□□□□□ -0.41
UBFD1-202ENST00000563366 PARP4Q9UKK3 1724 aaKnown RBP12.5□□□□□ -0.41
UBFD1-202ENST00000563366 OVOS2A0A0G2JMS6 1433 aa12.49□□□□□ -0.41
UBFD1-202ENST00000563366 ZC3H6P61129 1189 aaKnown RBP12.49□□□□□ -0.41
UBFD1-202ENST00000563366 IRX6P78412 446 aaPredicted RBP12.49□□□□□ -0.41
UBFD1-202ENST00000563366 COL14A1Q05707 1796 aaKnown RBP12.48□□□□□ -0.41
UBFD1-202ENST00000563366 KIAA0232Q92628 1395 aa12.48□□□□□ -0.41
UBFD1-202ENST00000563366 GNAT3A8MTJ3 354 aa12.48□□□□□ -0.41
UBFD1-202ENST00000563366 TOM1O60784 492 aa12.48□□□□□ -0.41
UBFD1-202ENST00000563366 MS4A1P11836 297 aa12.48□□□□□ -0.41
UBFD1-202ENST00000563366 MTHFSDQ2M296 383 aaKnown RBP12.48□□□□□ -0.41
UBFD1-202ENST00000563366 PKD1L3Q7Z443 1732 aa12.48□□□□□ -0.41
UBFD1-202ENST00000563366 SPDYE16A6NNV3 312 aaPredicted RBP12.47□□□□□ -0.41
UBFD1-202ENST00000563366 ZNF853P0CG23 659 aa12.47□□□□□ -0.41
UBFD1-202ENST00000563366 CANXP27824 592 aaKnown RBP12.47□□□□□ -0.41
UBFD1-202ENST00000563366 PLEKHO1Q53GL0 409 aaPredicted RBP12.47□□□□□ -0.41
UBFD1-202ENST00000563366 NBPF6Q5VWK0 638 aa12.47□□□□□ -0.41
UBFD1-202ENST00000563366 TSR2Q969E8 191 aaKnown RBP12.47□□□□□ -0.41
UBFD1-202ENST00000563366 NBPF4Q96M43 638 aa12.47□□□□□ -0.41
UBFD1-202ENST00000563366 COL16A1Q07092 1604 aaPredicted RBP12.47□□□□□ -0.41
UBFD1-202ENST00000563366 KIF16BQ96L93 1317 aa12.46□□□□□ -0.41
UBFD1-202ENST00000563366 RARSP54136 660 aaKnown RBP12.46□□□□□ -0.41
UBFD1-202ENST00000563366 EXOSC9Q06265 439 aaKnown RBP12.46□□□□□ -0.41
UBFD1-202ENST00000563366 PDE3AQ14432 1141 aa12.46□□□□□ -0.41
UBFD1-202ENST00000563366 PDIA6Q15084 440 aa12.46□□□□□ -0.41
UBFD1-202ENST00000563366 ALDH1L2Q3SY69 923 aa12.46□□□□□ -0.41
UBFD1-202ENST00000563366 PRDM11Q9NQV5 511 aa12.46□□□□□ -0.41
UBFD1-202ENST00000563366 BABAM1Q9NWV8 329 aa12.46□□□□□ -0.41
UBFD1-202ENST00000563366 ADAMTS7Q9UKP4 1686 aa12.45□□□□□ -0.42
UBFD1-202ENST00000563366 AAMPQ13685 434 aa12.45□□□□□ -0.42
UBFD1-202ENST00000563366 CABLES1Q8TDN4 633 aa12.45□□□□□ -0.42
UBFD1-202ENST00000563366 RAPGEF4Q8WZA2 1011 aa12.45□□□□□ -0.42
UBFD1-202ENST00000563366 AXIN2Q9Y2T1 843 aa12.45□□□□□ -0.42
UBFD1-202ENST00000563366 LAS1LQ9Y4W2 734 aaKnown RBP12.45□□□□□ -0.42
UBFD1-202ENST00000563366 SOS1Q07889 1333 aaPredicted RBP12.44□□□□□ -0.42
UBFD1-202ENST00000563366 CACNA1FO60840 1977 aa12.44□□□□□ -0.42
UBFD1-202ENST00000563366 CSB-PGBD3P0DP91 1061 aa12.44□□□□□ -0.42
UBFD1-202ENST00000563366 MAP3K9P80192 1104 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms