RNA–Protein interactions for RNA: ENST00000562884.1

CYLD-204, Transcript of CYLD lysine 63 deubiquitinase, human

TSL 3

Gene CYLD, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CYLD-204	ENST00000562884	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	SIK1	P57059	783 aa		11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	MTHFSD	Q2M296	383 aa	Known RBP	11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	MTFR1L	Q9H019	292 aa		11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	ASAP1	Q9ULH1	1129 aa		11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	KDM6A	O15550	1401 aa	Predicted RBP	11.86	□□□□□ -0.51
CYLD-204	ENST00000562884	ATP6V1A	P38606	617 aa		11.85	□□□□□ -0.51
CYLD-204	ENST00000562884	ZNF827	Q17R98	1081 aa		11.85	□□□□□ -0.51
CYLD-204	ENST00000562884	NFATC2IP	Q8NCF5	419 aa		11.85	□□□□□ -0.51
CYLD-204	ENST00000562884	ATG3	Q9NT62	314 aa		11.85	□□□□□ -0.51
CYLD-204	ENST00000562884	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.85	□□□□□ -0.51
CYLD-204	ENST00000562884	TUBGCP6	Q96RT7	1819 aa		11.85	□□□□□ -0.51
CYLD-204	ENST00000562884	GNAT3	A8MTJ3	354 aa		11.84	□□□□□ -0.51
CYLD-204	ENST00000562884	RNMT	O43148	476 aa	Known RBP	11.84	□□□□□ -0.51
CYLD-204	ENST00000562884	PRKAR2B	P31323	418 aa		11.84	□□□□□ -0.51
CYLD-204	ENST00000562884	KCNQ4	P56696	695 aa		11.84	□□□□□ -0.51
CYLD-204	ENST00000562884	RSPH6A	Q9H0K4	717 aa		11.84	□□□□□ -0.51
CYLD-204	ENST00000562884	SLC52A2	Q9HAB3	445 aa		11.84	□□□□□ -0.51
CYLD-204	ENST00000562884	C4B	P0C0L5	1744 aa		11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	ZBTB7A	O95365	584 aa		11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	AK7	Q96M32	723 aa		11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	RBM42	Q9BTD8	480 aa	Known RBP	11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	ADAMTS7	Q9UKP4	1686 aa		11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	PNPLA7	Q6ZV29	1317 aa		11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	UBR3	Q6ZT12	1888 aa		11.83	□□□□□ -0.52
CYLD-204	ENST00000562884	MAP3K5	Q99683	1374 aa		11.82	□□□□□ -0.52
CYLD-204	ENST00000562884	LGR6	Q9HBX8	967 aa		11.82	□□□□□ -0.52
CYLD-204	ENST00000562884	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	HTATSF1	O43719	755 aa	Known RBP	11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	SSFA2	P28290	1259 aa		11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	POLD1	P28340	1107 aa		11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	TEF	Q10587	303 aa		11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	RC3H1	Q5TC82	1133 aa	Known RBP	11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	RTF1	Q92541	710 aa	Known RBP	11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	MRC1	P22897	1456 aa		11.81	□□□□□ -0.52
CYLD-204	ENST00000562884	COL24A1	Q17RW2	1714 aa		11.8	□□□□□ -0.52
CYLD-204	ENST00000562884	PHACTR3	Q96KR7	559 aa		11.8	□□□□□ -0.52
CYLD-204	ENST00000562884	PDGFD	Q9GZP0	370 aa	Predicted RBP	11.8	□□□□□ -0.52
CYLD-204	ENST00000562884	COL5A3	P25940	1745 aa	Predicted RBP	11.8	□□□□□ -0.52
CYLD-204	ENST00000562884	PTCD1	O75127	700 aa	Known RBP	11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	PTGER2	P43116	358 aa		11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	ITPK1	Q13572	414 aa		11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	COL23A1	Q86Y22	540 aa	Predicted RBP	11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	TTC5	Q8N0Z6	440 aa		11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	LINC00116	Q8NCU8	138 aa		11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	DLG5	Q8TDM6	1919 aa		11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	SIPA1L3	O60292	1781 aa	Predicted RBP	11.79	□□□□□ -0.52
CYLD-204	ENST00000562884	CIC	Q96RK0	1608 aa	Predicted RBP	11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	MYH14	Q7Z406	1995 aa	Known RBP	11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	VSIG10	Q8N0Z9	540 aa		11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	IL17RE	Q8NFR9	667 aa		11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	RTCB	Q9Y3I0	505 aa	Known RBP	11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	CNTNAP4	Q9C0A0	1308 aa		11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	MAPK8IP3	Q9UPT6	1336 aa		11.78	□□□□□ -0.52
CYLD-204	ENST00000562884	GNPAT	O15228	680 aa		11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	TRAPPC3L	Q5T215	181 aa		11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	ARX	Q96QS3	562 aa		11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	SGIP1	Q9BQI5	828 aa		11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	TEX13A	Q9BXU3	409 aa	Predicted RBP	11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	CEMIP	Q8WUJ3	1361 aa		11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	UBR2	Q8IWV8	1755 aa		11.77	□□□□□ -0.53
CYLD-204	ENST00000562884	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.76	□□□□□ -0.53
CYLD-204	ENST00000562884	RPS6KA4	O75676	772 aa		11.76	□□□□□ -0.53
CYLD-204	ENST00000562884	WDR43	Q15061	677 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
CYLD-204	ENST00000562884	SLC4A9	Q96Q91	983 aa		11.76	□□□□□ -0.53
CYLD-204	ENST00000562884	SLC39A6	Q13433	755 aa		11.75	□□□□□ -0.53
CYLD-204	ENST00000562884	NFE2L2	Q16236	605 aa		11.75	□□□□□ -0.53
CYLD-204	ENST00000562884	ZNF790	Q6PG37	636 aa		11.75	□□□□□ -0.53
CYLD-204	ENST00000562884	PLEKHF1	Q96S99	279 aa		11.75	□□□□□ -0.53
CYLD-204	ENST00000562884	TJP1	Q07157	1748 aa		11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	BTBD11	A6QL63	1104 aa		11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	PHF14	O94880	888 aa		11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	STARD3NL	O95772	234 aa		11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	CRKL	P46109	303 aa	Known RBP	11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	PNISR	Q8TF01	805 aa	Known RBP	11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	FMNL2	Q96PY5	1086 aa		11.74	□□□□□ -0.53
CYLD-204	ENST00000562884	RFC4	P35249	363 aa		11.73	□□□□□ -0.53
CYLD-204	ENST00000562884	LMOD3	Q0VAK6	560 aa		11.73	□□□□□ -0.53
CYLD-204	ENST00000562884	TAF7	Q15545	349 aa	Predicted RBP	11.73	□□□□□ -0.53
CYLD-204	ENST00000562884	KCP	Q6ZWJ8	1503 aa		11.73	□□□□□ -0.53
CYLD-204	ENST00000562884	NLGN1	Q8N2Q7	840 aa		11.73	□□□□□ -0.53
CYLD-204	ENST00000562884	CCDC87	Q9NVE4	849 aa		11.73	□□□□□ -0.53
CYLD-204	ENST00000562884	MCM10	Q7L590	875 aa		11.72	□□□□□ -0.53
CYLD-204	ENST00000562884	DNAJC10	Q8IXB1	793 aa		11.72	□□□□□ -0.53
CYLD-204	ENST00000562884	ARHGEF1	Q92888	912 aa	Known RBP	11.72	□□□□□ -0.53
CYLD-204	ENST00000562884	SYT17	Q9BSW7	474 aa		11.72	□□□□□ -0.53
CYLD-204	ENST00000562884	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.72	□□□□□ -0.53
CYLD-204	ENST00000562884	HEG1	Q9ULI3	1381 aa		11.71	□□□□□ -0.53
CYLD-204	ENST00000562884	ANP32C	O43423	234 aa		11.71	□□□□□ -0.53
CYLD-204	ENST00000562884	CYP19A1	P11511	503 aa	Predicted RBP	11.71	□□□□□ -0.53
CYLD-204	ENST00000562884	HOXD11	P31277	338 aa	Predicted RBP	11.71	□□□□□ -0.53
CYLD-204	ENST00000562884	RUNDC1	Q96C34	613 aa		11.71	□□□□□ -0.53
CYLD-204	ENST00000562884	ZNF496	Q96IT1	587 aa	Predicted RBP	11.71	□□□□□ -0.53
CYLD-204	ENST00000562884		A0A087WZG4	1122 aa		11.7	□□□□□ -0.54
CYLD-204	ENST00000562884	ZPR1	O75312	459 aa		11.7	□□□□□ -0.54
CYLD-204	ENST00000562884	RIPK4	P57078	832 aa		11.7	□□□□□ -0.54

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