RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 TEFQ10587 303 aa21.67■■□□□ 1.06
VPS4A-202ENST00000562754 IFT57Q9NWB7 429 aa21.66■■□□□ 1.06
VPS4A-202ENST00000562754 CABP4P57796 275 aa21.65■■□□□ 1.06
VPS4A-202ENST00000562754 SLFN5Q08AF3 891 aa21.65■■□□□ 1.06
VPS4A-202ENST00000562754 ACSBG1Q96GR2 724 aa21.65■■□□□ 1.06
VPS4A-202ENST00000562754 TAF7Q15545 349 aaPredicted RBP21.64■■□□□ 1.05
VPS4A-202ENST00000562754 NFATC2IPQ8NCF5 419 aa21.64■■□□□ 1.05
VPS4A-202ENST00000562754 CFAP44Q96MT7 982 aa21.64■■□□□ 1.05
VPS4A-202ENST00000562754 LAS1LQ9Y4W2 734 aaKnown RBP21.64■■□□□ 1.05
VPS4A-202ENST00000562754 E9PSI1 815 aa21.63■■□□□ 1.05
VPS4A-202ENST00000562754 CHL1O00533 1208 aa21.63■■□□□ 1.05
VPS4A-202ENST00000562754 PRIM1P49642 420 aaKnown RBP21.63■■□□□ 1.05
VPS4A-202ENST00000562754 GNAI1P63096 354 aa21.63■■□□□ 1.05
VPS4A-202ENST00000562754 MIS18AQ9NYP9 233 aa21.63■■□□□ 1.05
VPS4A-202ENST00000562754 UBR2Q8IWV8 1755 aa21.63■■□□□ 1.05
VPS4A-202ENST00000562754 BTAF1O14981 1849 aa21.62■■□□□ 1.05
VPS4A-202ENST00000562754 FANCIQ9NVI1 1328 aa21.62■■□□□ 1.05
VPS4A-202ENST00000562754 TRMT2AQ8IZ69 625 aaKnown RBP21.62■■□□□ 1.05
VPS4A-202ENST00000562754 TSR2Q969E8 191 aaKnown RBP21.62■■□□□ 1.05
VPS4A-202ENST00000562754 MBIPQ9NS73 344 aa21.62■■□□□ 1.05
VPS4A-202ENST00000562754 TMOD3Q9NYL9 352 aa21.62■■□□□ 1.05
VPS4A-202ENST00000562754 KCNQ2O43526 872 aa21.61■■□□□ 1.05
VPS4A-202ENST00000562754 PIGBQ92521 554 aa21.61■■□□□ 1.05
VPS4A-202ENST00000562754 DUSP27Q5VZP5 1158 aa21.6■■□□□ 1.05
VPS4A-202ENST00000562754 FAM196AQ6ZSG2 479 aa21.6■■□□□ 1.05
VPS4A-202ENST00000562754 PTF1AQ7RTS3 328 aa21.6■■□□□ 1.05
VPS4A-202ENST00000562754 SYTL4Q96C24 671 aaPredicted RBP21.6■■□□□ 1.05
VPS4A-202ENST00000562754 TSPYL4Q9UJ04 414 aa21.6■■□□□ 1.05
VPS4A-202ENST00000562754 BTBD11A6QL63 1104 aa21.59■■□□□ 1.05
VPS4A-202ENST00000562754 KCNQ3O43525 872 aa21.59■■□□□ 1.05
VPS4A-202ENST00000562754 MYH16Q9H6N6 1097 aa21.59■■□□□ 1.05
VPS4A-202ENST00000562754 BABAM1Q9NWV8 329 aa21.59■■□□□ 1.05
VPS4A-202ENST00000562754 KCPQ6ZWJ8 1503 aa21.59■■□□□ 1.05
VPS4A-202ENST00000562754 SLC39A6Q13433 755 aa21.58■■□□□ 1.05
VPS4A-202ENST00000562754 TNS1Q9HBL0 1735 aaKnown RBP21.57■■□□□ 1.04
VPS4A-202ENST00000562754 ZNF790Q6PG37 636 aa21.55■■□□□ 1.04
VPS4A-202ENST00000562754 ATG3Q9NT62 314 aa21.55■■□□□ 1.04
VPS4A-202ENST00000562754 ASAP1Q9ULH1 1129 aa21.55■■□□□ 1.04
VPS4A-202ENST00000562754 C5P01031 1676 aa21.55■■□□□ 1.04
VPS4A-202ENST00000562754 KRT24Q2M2I5 525 aa21.54■■□□□ 1.04
VPS4A-202ENST00000562754 EIF4A1P60842 406 aaKnown RBP21.53■■□□□ 1.04
VPS4A-202ENST00000562754 HEG1Q9ULI3 1381 aa21.52■■□□□ 1.04
VPS4A-202ENST00000562754 TRIM37O94972 964 aa21.52■■□□□ 1.04
VPS4A-202ENST00000562754 EXOSC9Q06265 439 aaKnown RBP21.52■■□□□ 1.04
VPS4A-202ENST00000562754 BCL11BQ9C0K0 894 aaPredicted RBP21.52■■□□□ 1.04
VPS4A-202ENST00000562754 TTC5Q8N0Z6 440 aa21.51■■□□□ 1.03
VPS4A-202ENST00000562754 ZNF496Q96IT1 587 aaPredicted RBP21.51■■□□□ 1.03
VPS4A-202ENST00000562754 LY75O60449 1722 aa21.51■■□□□ 1.03
VPS4A-202ENST00000562754 LAMB4A4D0S4 1761 aa21.51■■□□□ 1.03
VPS4A-202ENST00000562754 PALLDQ8WX93 1383 aa21.5■■□□□ 1.03
VPS4A-202ENST00000562754 TJP1Q07157 1748 aa21.5■■□□□ 1.03
VPS4A-202ENST00000562754 TSPYL6Q8N831 410 aa21.5■■□□□ 1.03
VPS4A-202ENST00000562754 C8orf58Q8NAV2 365 aa21.5■■□□□ 1.03
VPS4A-202ENST00000562754 CICQ96RK0 1608 aaPredicted RBP21.5■■□□□ 1.03
VPS4A-202ENST00000562754 ZNF831Q5JPB2 1677 aa21.47■■□□□ 1.03
VPS4A-202ENST00000562754 EP400Q96L91 3159 aa21.47■■□□□ 1.03
VPS4A-202ENST00000562754 PTCD1O75127 700 aaKnown RBP21.47■■□□□ 1.03
VPS4A-202ENST00000562754 SMARCC1Q92922 1105 aaPredicted RBP21.47■■□□□ 1.03
VPS4A-202ENST00000562754 FMNL2Q96PY5 1086 aa21.47■■□□□ 1.03
VPS4A-202ENST00000562754 ELL2O00472 640 aaPredicted RBP21.46■■□□□ 1.03
VPS4A-202ENST00000562754 SLC4A9Q96Q91 983 aa21.46■■□□□ 1.03
VPS4A-202ENST00000562754 PRAMEF22A3QJZ6 481 aa21.45■■□□□ 1.02
VPS4A-202ENST00000562754 GIGYF1O75420 1035 aaPredicted RBP21.45■■□□□ 1.02
VPS4A-202ENST00000562754 TWISTNBQ3B726 338 aaPredicted RBP21.45■■□□□ 1.02
VPS4A-202ENST00000562754 RGPD3A6NKT7 1758 aaPredicted RBP21.45■■□□□ 1.02
VPS4A-202ENST00000562754 RGPD4Q7Z3J3 1758 aa21.45■■□□□ 1.02
VPS4A-202ENST00000562754 RBM42Q9BTD8 480 aaKnown RBP21.44■■□□□ 1.02
VPS4A-202ENST00000562754 COL5A3P25940 1745 aaPredicted RBP21.43■■□□□ 1.02
VPS4A-202ENST00000562754 VAMP4O75379 141 aa21.43■■□□□ 1.02
VPS4A-202ENST00000562754 LOC102724428A0A0B4J2F2 783 aa21.42■■□□□ 1.02
VPS4A-202ENST00000562754 HOXB7P09629 217 aa21.42■■□□□ 1.02
VPS4A-202ENST00000562754 SIK1P57059 783 aa21.42■■□□□ 1.02
VPS4A-202ENST00000562754 TAF1LQ8IZX4 1826 aa21.41■■□□□ 1.02
VPS4A-202ENST00000562754 SOS1Q07889 1333 aaPredicted RBP21.41■■□□□ 1.02
VPS4A-202ENST00000562754 SNRPA1P09661 255 aaKnown RBP21.41■■□□□ 1.02
VPS4A-202ENST00000562754 CT47B1P0C2W7 299 aaPredicted RBP21.41■■□□□ 1.02
VPS4A-202ENST00000562754 VSIG10Q8N0Z9 540 aa21.41■■□□□ 1.02
VPS4A-202ENST00000562754 DNAJC10Q8IXB1 793 aa21.4■■□□□ 1.02
VPS4A-202ENST00000562754 APBA3O96018 575 aa21.39■■□□□ 1.01
VPS4A-202ENST00000562754 ITPK1Q13572 414 aa21.39■■□□□ 1.01
VPS4A-202ENST00000562754 RREB1Q92766 1687 aa21.39■■□□□ 1.01
VPS4A-202ENST00000562754 USP16Q9Y5T5 823 aa21.38■■□□□ 1.01
VPS4A-202ENST00000562754 ATP6V1AP38606 617 aa21.37■■□□□ 1.01
VPS4A-202ENST00000562754 KCNQ4P56696 695 aa21.37■■□□□ 1.01
VPS4A-202ENST00000562754 HDGFL1Q5TGJ6 251 aa21.37■■□□□ 1.01
VPS4A-202ENST00000562754 ILDR2Q71H61 639 aa21.37■■□□□ 1.01
VPS4A-202ENST00000562754 NECTIN2Q92692 538 aa21.37■■□□□ 1.01
VPS4A-202ENST00000562754 TCERG1O14776 1098 aaKnown RBP21.36■■□□□ 1.01
VPS4A-202ENST00000562754 PLSCR1O15162 318 aa21.36■■□□□ 1.01
VPS4A-202ENST00000562754 CENPBP07199 599 aaPredicted RBP21.36■■□□□ 1.01
VPS4A-202ENST00000562754 EIF2S2P20042 333 aaKnown RBP21.36■■□□□ 1.01
VPS4A-202ENST00000562754 RARSP54136 660 aaKnown RBP21.36■■□□□ 1.01
VPS4A-202ENST00000562754 CCNL1Q9UK58 526 aaPredicted RBP21.36■■□□□ 1.01
VPS4A-202ENST00000562754 MYH14Q7Z406 1995 aaKnown RBP21.36■■□□□ 1.01
VPS4A-202ENST00000562754 SSH1Q8WYL5 1049 aa21.35■■□□□ 1.01
VPS4A-202ENST00000562754 RCAN3Q9UKA8 241 aa21.35■■□□□ 1.01
VPS4A-202ENST00000562754 CACNA1FO60840 1977 aa21.34■■□□□ 1.01
VPS4A-202ENST00000562754 CYP19A1P11511 503 aaPredicted RBP21.34■■□□□ 1.01
VPS4A-202ENST00000562754 PROM2Q8N271 834 aa21.34■■□□□ 1.01
VPS4A-202ENST00000562754 LINC00116Q8NCU8 138 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms