RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PCDH11YQ9BZA8 1340 aa9.43□□□□□ -0.9
VPS39-204ENST00000561818 ZNF335Q9H4Z2 1342 aaPredicted RBP9.43□□□□□ -0.9
VPS39-204ENST00000561818 DDX58O95786 925 aaKnown RBP9.43□□□□□ -0.9
VPS39-204ENST00000561818 RLBP1P12271 317 aa9.43□□□□□ -0.9
VPS39-204ENST00000561818 SMC5Q8IY18 1101 aa9.43□□□□□ -0.9
VPS39-204ENST00000561818 C8orf58Q8NAV2 365 aa9.43□□□□□ -0.9
VPS39-204ENST00000561818 RBM33Q96EV2 1170 aaKnown RBP9.43□□□□□ -0.9
VPS39-204ENST00000561818 THUMPD2Q9BTF0 503 aaKnown RBP9.43□□□□□ -0.9
VPS39-204ENST00000561818 PRDM11Q9NQV5 511 aa9.43□□□□□ -0.9
VPS39-204ENST00000561818 COL18A1P39060 1754 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 PKD1L3Q7Z443 1732 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 ERBB4Q15303 1308 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 BTBD11A6QL63 1104 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 ZBTB7BO15156 539 aaPredicted RBP9.42□□□□□ -0.9
VPS39-204ENST00000561818 DCTN1Q14203 1278 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 HDGFL1Q5TGJ6 251 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 IL27Q8NEV9 243 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 CDCA7Q9BWT1 371 aaPredicted RBP9.42□□□□□ -0.9
VPS39-204ENST00000561818 BACH2Q9BYV9 841 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 NLRP2Q9NX02 1062 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 DBF4Q9UBU7 674 aaPredicted RBP9.42□□□□□ -0.9
VPS39-204ENST00000561818 KDM3BQ7LBC6 1761 aa9.42□□□□□ -0.9
VPS39-204ENST00000561818 N4BP2Q86UW6 1770 aaPredicted RBP9.42□□□□□ -0.9
VPS39-204ENST00000561818 ZBTB7CA1YPR0 619 aa9.41□□□□□ -0.9
VPS39-204ENST00000561818 RNMTO43148 476 aaKnown RBP9.41□□□□□ -0.9
VPS39-204ENST00000561818 PDE4AP27815 886 aa9.41□□□□□ -0.9
VPS39-204ENST00000561818 XPCQ01831 940 aaPredicted RBP9.41□□□□□ -0.9
VPS39-204ENST00000561818 TSPYL6Q8N831 410 aa9.41□□□□□ -0.9
VPS39-204ENST00000561818 IL17REQ8NFR9 667 aa9.41□□□□□ -0.9
VPS39-204ENST00000561818 CARD10Q9BWT7 1032 aa9.41□□□□□ -0.9
VPS39-204ENST00000561818 HYPKQ9NX55 129 aa9.41□□□□□ -0.9
VPS39-204ENST00000561818 COL22A1Q8NFW1 1626 aaPredicted RBP9.41□□□□□ -0.9
VPS39-204ENST00000561818 ZC3H6P61129 1189 aaKnown RBP9.4□□□□□ -0.9
VPS39-204ENST00000561818 FLIIQ13045 1269 aa9.4□□□□□ -0.9
VPS39-204ENST00000561818 ERICH6Q7L0X2 663 aa9.4□□□□□ -0.9
VPS39-204ENST00000561818 TTC5Q8N0Z6 440 aa9.4□□□□□ -0.9
VPS39-204ENST00000561818 COL5A2P05997 1499 aaPredicted RBP9.4□□□□□ -0.91
VPS39-204ENST00000561818 ATP10DQ9P241 1426 aa9.39□□□□□ -0.91
VPS39-204ENST00000561818 ABCA3Q99758 1704 aa9.39□□□□□ -0.91
VPS39-204ENST00000561818 ERVV-2B6SEH9 535 aa9.39□□□□□ -0.91
VPS39-204ENST00000561818 EIF4A1P60842 406 aaKnown RBP9.39□□□□□ -0.91
VPS39-204ENST00000561818 FKBP5Q13451 457 aaPredicted RBP9.39□□□□□ -0.91
VPS39-204ENST00000561818 HSP90AB4PQ58FF6 505 aa9.39□□□□□ -0.91
VPS39-204ENST00000561818 SLC52A2Q9HAB3 445 aa9.39□□□□□ -0.91
VPS39-204ENST00000561818 PCDHB15Q9Y5E8 787 aa9.39□□□□□ -0.91
VPS39-204ENST00000561818 COL14A1Q05707 1796 aaKnown RBP9.39□□□□□ -0.91
VPS39-204ENST00000561818 HEG1Q9ULI3 1381 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 ELL2O00472 640 aaPredicted RBP9.38□□□□□ -0.91
VPS39-204ENST00000561818 TOM1O60784 492 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 MYCNP04198 464 aaPredicted RBP9.38□□□□□ -0.91
VPS39-204ENST00000561818 GNAI2P04899 355 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 IL2RBP14784 551 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 PHKG2P15735 406 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 NUCB1Q02818 461 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 SAMD1Q6SPF0 538 aaPredicted RBP9.38□□□□□ -0.91
VPS39-204ENST00000561818 ANKRD44Q8N8A2 993 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 DAXXQ9UER7 740 aaPredicted RBP9.38□□□□□ -0.91
VPS39-204ENST00000561818 RGS12O14924 1447 aa9.38□□□□□ -0.91
VPS39-204ENST00000561818 VIRMAQ69YN4 1812 aaKnown RBP9.38□□□□□ -0.91
VPS39-204ENST00000561818 SCN11AQ9UI33 1791 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 ALDH1L1O75891 902 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 IGHDP01880 384 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 EVA1CP58658 441 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 CASC1Q6TDU7 716 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 TOM1L2Q6ZVM7 507 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 USHBP1Q8N6Y0 703 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 FMNL2Q96PY5 1086 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 AXIN2Q9Y2T1 843 aa9.37□□□□□ -0.91
VPS39-204ENST00000561818 THRAP3Q9Y2W1 955 aaKnown RBP9.37□□□□□ -0.91
VPS39-204ENST00000561818 SIPA1L3O60292 1781 aaPredicted RBP9.37□□□□□ -0.91
VPS39-204ENST00000561818 NKX1-1Q15270 411 aaPredicted RBP9.36□□□□□ -0.91
VPS39-204ENST00000561818 BMP2KLQ5H9B9 411 aa9.36□□□□□ -0.91
VPS39-204ENST00000561818 ZNF790Q6PG37 636 aa9.36□□□□□ -0.91
VPS39-204ENST00000561818 CHD1LQ86WJ1 897 aa9.36□□□□□ -0.91
VPS39-204ENST00000561818 ZCRB1Q8TBF4 217 aaKnown RBP9.36□□□□□ -0.91
VPS39-204ENST00000561818 IPO9Q96P70 1041 aaKnown RBP9.36□□□□□ -0.91
VPS39-204ENST00000561818 TEX13AQ9BXU3 409 aaPredicted RBP9.36□□□□□ -0.91
VPS39-204ENST00000561818 SRCIN1Q9C0H9 1055 aa9.36□□□□□ -0.91
VPS39-204ENST00000561818 PDZRN3Q9UPQ7 1066 aa9.36□□□□□ -0.91
VPS39-204ENST00000561818 PLCH1Q4KWH8 1693 aa9.36□□□□□ -0.91
VPS39-204ENST00000561818 LRP6O75581 1613 aa9.35□□□□□ -0.91
VPS39-204ENST00000561818 GIGYF1O75420 1035 aaPredicted RBP9.35□□□□□ -0.91
VPS39-204ENST00000561818 SNRPA1P09661 255 aaKnown RBP9.35□□□□□ -0.91
VPS39-204ENST00000561818 UBTFL1P0CB47 393 aaPredicted RBP9.35□□□□□ -0.91
VPS39-204ENST00000561818 NEXNQ0ZGT2 675 aa9.35□□□□□ -0.91
VPS39-204ENST00000561818 DCTPP1Q9H773 170 aa9.35□□□□□ -0.91
VPS39-204ENST00000561818 DDX21Q9NR30 783 aaKnown RBP eCLIP9.35□□□□□ -0.91
VPS39-204ENST00000561818 MEGF6O75095 1541 aa9.35□□□□□ -0.91
VPS39-204ENST00000561818 LTBP4Q8N2S1 1624 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 RAB11FIP3O75154 756 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 HMGB2P26583 209 aaKnown RBP9.34□□□□□ -0.91
VPS39-204ENST00000561818 RGS3P49796 1198 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 CABP4P57796 275 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 BECN1Q14457 450 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 DNAAF4Q8WXU2 420 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 FOXD4L1Q9NU39 408 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 ZNF219Q9P2Y4 722 aaPredicted RBP9.34□□□□□ -0.91
VPS39-204ENST00000561818 ROBO1Q9Y6N7 1651 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 RGPD2P0DJD1 1756 aa9.34□□□□□ -0.91
VPS39-204ENST00000561818 AOX1Q06278 1338 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms