RNA–Protein interactions for RNA: ENST00000561304.5

ZEB1-223, Transcript of zinc finger E-box binding homeobox 1, human

TSL 1 (best)

Gene ZEB1, Length 1,383 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZEB1-223	ENST00000561304	TOGARAM1	Q9Y4F4	1720 aa		10.34	□□□□□ -0.75
ZEB1-223	ENST00000561304	ITGB4	P16144	1822 aa		10.34	□□□□□ -0.75
ZEB1-223	ENST00000561304	HOXC9	P31274	260 aa		10.34	□□□□□ -0.75
ZEB1-223	ENST00000561304	CCER1	Q8TC90	406 aa	Predicted RBP	10.34	□□□□□ -0.75
ZEB1-223	ENST00000561304	LTV1	Q96GA3	475 aa	Predicted RBP	10.34	□□□□□ -0.75
ZEB1-223	ENST00000561304	RTL1	A6NKG5	1358 aa		10.34	□□□□□ -0.75
ZEB1-223	ENST00000561304	IL2RB	P14784	551 aa		10.33	□□□□□ -0.76
ZEB1-223	ENST00000561304	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	EXOC5	O00471	708 aa		10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	KCNQ2	O43526	872 aa		10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	SEC24B	O95487	1268 aa		10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	MKRN3	Q13064	507 aa	Known RBP	10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	ZFP91	Q96JP5	570 aa	Predicted RBP	10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	BCL11B	Q9C0K0	894 aa	Predicted RBP	10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.32	□□□□□ -0.76
ZEB1-223	ENST00000561304	QSER1	Q2KHR3	1735 aa		10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	C11orf95	C9JLR9	678 aa	Predicted RBP	10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	HSPA5	P11021	654 aa	Known RBP	10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	AMPH	P49418	695 aa		10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	CDCA8	Q53HL2	280 aa		10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	FAM163A	Q96GL9	167 aa	Predicted RBP	10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	ACSBG1	Q96GR2	724 aa		10.31	□□□□□ -0.76
ZEB1-223	ENST00000561304	PLSCR1	O15162	318 aa		10.3	□□□□□ -0.76
ZEB1-223	ENST00000561304	IRX5	P78411	483 aa	Predicted RBP	10.3	□□□□□ -0.76
ZEB1-223	ENST00000561304	USHBP1	Q8N6Y0	703 aa		10.3	□□□□□ -0.76
ZEB1-223	ENST00000561304	TAF1L	Q8IZX4	1826 aa		10.3	□□□□□ -0.76
ZEB1-223	ENST00000561304	HSP90AB2P	Q58FF8	381 aa		10.29	□□□□□ -0.76
ZEB1-223	ENST00000561304	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.29	□□□□□ -0.76
ZEB1-223	ENST00000561304	POLR3GL	Q9BT43	218 aa		10.29	□□□□□ -0.76
ZEB1-223	ENST00000561304	EMILIN1	Q9Y6C2	1016 aa		10.29	□□□□□ -0.76
ZEB1-223	ENST00000561304	FLT4	P35916	1363 aa		10.29	□□□□□ -0.76
ZEB1-223	ENST00000561304	NSD2	O96028	1365 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	INSR	P06213	1382 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	POTEF	A5A3E0	1075 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	NBPF6	Q5VWK0	638 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	NBPF4	Q96M43	638 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	COLQ	Q9Y215	455 aa	Predicted RBP	10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	VIRMA	Q69YN4	1812 aa	Known RBP	10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	NCAPD2	Q15021	1401 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	C5	P01031	1676 aa		10.28	□□□□□ -0.76
ZEB1-223	ENST00000561304	PLCG2	P16885	1265 aa		10.27	□□□□□ -0.76
ZEB1-223	ENST00000561304	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.27	□□□□□ -0.76
ZEB1-223	ENST00000561304	OCEL1	Q9H607	264 aa		10.27	□□□□□ -0.76
ZEB1-223	ENST00000561304	SMG6	Q86US8	1419 aa	Known RBP	10.27	□□□□□ -0.77
ZEB1-223	ENST00000561304	COL24A1	Q17RW2	1714 aa		10.27	□□□□□ -0.77
ZEB1-223	ENST00000561304	KIF24	Q5T7B8	1368 aa		10.27	□□□□□ -0.77
ZEB1-223	ENST00000561304	TXNRD1	Q16881	649 aa		10.26	□□□□□ -0.77
ZEB1-223	ENST00000561304	DDX54	Q8TDD1	881 aa	Known RBP	10.26	□□□□□ -0.77
ZEB1-223	ENST00000561304	NBPF14	Q5TI25	921 aa		10.26	□□□□□ -0.77
ZEB1-223	ENST00000561304	CGNL1	Q0VF96	1302 aa		10.25	□□□□□ -0.77
ZEB1-223	ENST00000561304	STK25	O00506	426 aa		10.24	□□□□□ -0.77
ZEB1-223	ENST00000561304	MAMSTR	Q6ZN01	415 aa		10.24	□□□□□ -0.77
ZEB1-223	ENST00000561304	ZCRB1	Q8TBF4	217 aa	Known RBP	10.24	□□□□□ -0.77
ZEB1-223	ENST00000561304	PANK3	Q9H999	370 aa		10.24	□□□□□ -0.77
ZEB1-223	ENST00000561304	LRRC4B	Q9NT99	713 aa		10.24	□□□□□ -0.77
ZEB1-223	ENST00000561304	UTRN	P46939	3433 aa		10.23	□□□□□ -0.77
ZEB1-223	ENST00000561304	PPM1G	O15355	546 aa	Predicted RBP	10.23	□□□□□ -0.77
ZEB1-223	ENST00000561304	TNNT2	P45379	298 aa	Predicted RBP	10.23	□□□□□ -0.77
ZEB1-223	ENST00000561304	ZNF827	Q17R98	1081 aa		10.23	□□□□□ -0.77
ZEB1-223	ENST00000561304	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.23	□□□□□ -0.77	1e-7	■■■■■ 28.4
ZEB1-223	ENST00000561304	POLK	Q9UBT6	870 aa		10.23	□□□□□ -0.77
ZEB1-223	ENST00000561304	STK24	Q9Y6E0	443 aa		10.23	□□□□□ -0.77
ZEB1-223	ENST00000561304	UBR3	Q6ZT12	1888 aa		10.22	□□□□□ -0.77
ZEB1-223	ENST00000561304	SLC15A2	Q16348	729 aa		10.22	□□□□□ -0.77
ZEB1-223	ENST00000561304	EFCAB3	Q8N7B9	438 aa		10.22	□□□□□ -0.77
ZEB1-223	ENST00000561304	KIF7	Q2M1P5	1343 aa		10.22	□□□□□ -0.77
ZEB1-223	ENST00000561304	WASHC2A	Q641Q2	1341 aa		10.22	□□□□□ -0.77
ZEB1-223	ENST00000561304	GOLGB1	Q14789	3259 aa	Known RBP	10.22	□□□□□ -0.77
ZEB1-223	ENST00000561304	TAT	P17735	454 aa	Predicted RBP	10.21	□□□□□ -0.78
ZEB1-223	ENST00000561304	PRIM1	P49642	420 aa	Known RBP	10.21	□□□□□ -0.78
ZEB1-223	ENST00000561304	KCNQ4	P56696	695 aa		10.21	□□□□□ -0.78
ZEB1-223	ENST00000561304	RAPGEF4	Q8WZA2	1011 aa		10.21	□□□□□ -0.78
ZEB1-223	ENST00000561304	SYTL4	Q96C24	671 aa	Predicted RBP	10.21	□□□□□ -0.78
ZEB1-223	ENST00000561304	CYP27B1	O15528	508 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	ZBTB7A	O95365	584 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	CDAN1	Q8IWY9	1227 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	PDCD7	Q8N8D1	485 aa	Known RBP	10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	EYA1	Q99502	592 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	STK32B	Q9NY57	414 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	PCDH11X	Q9BZA7	1347 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	PCDH11Y	Q9BZA8	1340 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	C4B	P0C0L5	1744 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	SCN11A	Q9UI33	1791 aa		10.2	□□□□□ -0.78
ZEB1-223	ENST00000561304	EIF4A2	Q14240	407 aa	Known RBP	10.19	□□□□□ -0.78
ZEB1-223	ENST00000561304	HS6ST3	Q8IZP7	471 aa		10.19	□□□□□ -0.78
ZEB1-223	ENST00000561304	SPON1	Q9HCB6	807 aa		10.19	□□□□□ -0.78
ZEB1-223	ENST00000561304	COL5A3	P25940	1745 aa	Predicted RBP	10.18	□□□□□ -0.78
ZEB1-223	ENST00000561304	PTGER2	P43116	358 aa		10.18	□□□□□ -0.78
ZEB1-223	ENST00000561304	IGSF1	Q8N6C5	1336 aa		10.17	□□□□□ -0.78
ZEB1-223	ENST00000561304	PNPLA7	Q6ZV29	1317 aa		10.16	□□□□□ -0.78
ZEB1-223	ENST00000561304	SCUBE2	Q9NQ36	999 aa		10.16	□□□□□ -0.78
ZEB1-223	ENST00000561304	RTN4	Q9NQC3	1192 aa	Known RBP	10.16	□□□□□ -0.78
ZEB1-223	ENST00000561304	CHD4	Q14839	1912 aa		10.16	□□□□□ -0.78
ZEB1-223	ENST00000561304	SLC27A3	Q5K4L6	730 aa		10.15	□□□□□ -0.78
ZEB1-223	ENST00000561304	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.15	□□□□□ -0.78
ZEB1-223	ENST00000561304	PPP1R1B	Q9UD71	204 aa	Predicted RBP	10.15	□□□□□ -0.78
ZEB1-223	ENST00000561304	ZNF831	Q5JPB2	1677 aa		10.15	□□□□□ -0.78
ZEB1-223	ENST00000561304	KDM6A	O15550	1401 aa	Predicted RBP	10.15	□□□□□ -0.79
ZEB1-223	ENST00000561304	MYH14	Q7Z406	1995 aa	Known RBP	10.15	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms