RNA–Protein interactions for RNA: ENST00000561271.1

CDC42BPB-208, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 3

Gene CDC42BPB, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-208ENST00000561271 SIK1P57059 783 aa23.3■■□□□ 1.32
CDC42BPB-208ENST00000561271 DCAF5Q96JK2 942 aa23.3■■□□□ 1.32
CDC42BPB-208ENST00000561271 HMOX1P09601 288 aa23.29■■□□□ 1.32
CDC42BPB-208ENST00000561271 C1orf141Q5JVX7 400 aa23.29■■□□□ 1.32
CDC42BPB-208ENST00000561271 ATG3Q9NT62 314 aa23.29■■□□□ 1.32
CDC42BPB-208ENST00000561271 UBR2Q8IWV8 1755 aa23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 ERVV-2B6SEH9 535 aa23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 DIAPH1O60610 1272 aaKnown RBP23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 LINC00116Q8NCU8 138 aa23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 AK7Q96M32 723 aa23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 SYT17Q9BSW7 474 aa23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 MRC1P22897 1456 aa23.28■■□□□ 1.32
CDC42BPB-208ENST00000561271 MAP3K5Q99683 1374 aa23.27■■□□□ 1.32
CDC42BPB-208ENST00000561271 POLD1P28340 1107 aa23.27■■□□□ 1.32
CDC42BPB-208ENST00000561271 ITPK1Q13572 414 aa23.27■■□□□ 1.32
CDC42BPB-208ENST00000561271 AMIGO3Q86WK7 504 aa23.27■■□□□ 1.32
CDC42BPB-208ENST00000561271 MSL1Q68DK7 614 aa23.26■■□□□ 1.31
CDC42BPB-208ENST00000561271 CABP4P57796 275 aa23.25■■□□□ 1.31
CDC42BPB-208ENST00000561271 KLHL34Q8N239 644 aa23.25■■□□□ 1.31
CDC42BPB-208ENST00000561271 PHF14O94880 888 aa23.24■■□□□ 1.31
CDC42BPB-208ENST00000561271 HMGB2P26583 209 aaKnown RBP23.24■■□□□ 1.31
CDC42BPB-208ENST00000561271 ATP6V1AP38606 617 aa23.24■■□□□ 1.31
CDC42BPB-208ENST00000561271 SMIM5Q71RC9 77 aa23.24■■□□□ 1.31
CDC42BPB-208ENST00000561271 DCAF8L1A6NGE4 600 aa23.23■■□□□ 1.31
CDC42BPB-208ENST00000561271 DLG5Q8TDM6 1919 aa23.23■■□□□ 1.31
CDC42BPB-208ENST00000561271 FLAD1Q8NFF5 587 aa23.21■■□□□ 1.31
CDC42BPB-208ENST00000561271 SLC4A9Q96Q91 983 aa23.21■■□□□ 1.31
CDC42BPB-208ENST00000561271 RBM42Q9BTD8 480 aaKnown RBP23.21■■□□□ 1.31
CDC42BPB-208ENST00000561271 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.2■■□□□ 1.3
CDC42BPB-208ENST00000561271 GNPATO15228 680 aa23.2■■□□□ 1.3
CDC42BPB-208ENST00000561271 AKAP4Q5JQC9 854 aa23.2■■□□□ 1.3
CDC42BPB-208ENST00000561271 KIF13BQ9NQT8 1826 aa23.19■■□□□ 1.3
CDC42BPB-208ENST00000561271 U2SURPO15042 1029 aaKnown RBP23.19■■□□□ 1.3
CDC42BPB-208ENST00000561271 NFATC2IPQ8NCF5 419 aa23.19■■□□□ 1.3
CDC42BPB-208ENST00000561271 UTRNP46939 3433 aa23.18■■□□□ 1.3
CDC42BPB-208ENST00000561271 SSFA2P28290 1259 aa23.18■■□□□ 1.3
CDC42BPB-208ENST00000561271 KCPQ6ZWJ8 1503 aa23.18■■□□□ 1.3
CDC42BPB-208ENST00000561271 MTHFSDQ2M296 383 aaKnown RBP23.17■■□□□ 1.3
CDC42BPB-208ENST00000561271 GOLGB1Q14789 3259 aaKnown RBP23.15■■□□□ 1.3
CDC42BPB-208ENST00000561271 N4BP2Q86UW6 1770 aaPredicted RBP23.15■■□□□ 1.3
CDC42BPB-208ENST00000561271 PTCD1O75127 700 aaKnown RBP23.15■■□□□ 1.3
CDC42BPB-208ENST00000561271 NLGN2Q8NFZ4 835 aa23.15■■□□□ 1.3
CDC42BPB-208ENST00000561271 LGR6Q9HBX8 967 aa23.15■■□□□ 1.3
CDC42BPB-208ENST00000561271 KIAA1551Q9HCM1 1747 aa23.15■■□□□ 1.3
CDC42BPB-208ENST00000561271 RNMTO43148 476 aaKnown RBP23.14■■□□□ 1.29
CDC42BPB-208ENST00000561271 YY1P25490 414 aa23.14■■□□□ 1.29
CDC42BPB-208ENST00000561271 PPP2R1AP30153 589 aa23.14■■□□□ 1.29
CDC42BPB-208ENST00000561271 CFAP53Q96M91 514 aa23.14■■□□□ 1.29
CDC42BPB-208ENST00000561271 SLC52A2Q9HAB3 445 aa23.14■■□□□ 1.29
CDC42BPB-208ENST00000561271 CNTNAP4Q9C0A0 1308 aa23.13■■□□□ 1.29
CDC42BPB-208ENST00000561271 BRCA1P38398 1863 aaKnown RBP23.11■■□□□ 1.29
CDC42BPB-208ENST00000561271 RTCBQ9Y3I0 505 aaKnown RBP23.1■■□□□ 1.29
CDC42BPB-208ENST00000561271 AFDNP55196 1824 aaKnown RBP23.09■■□□□ 1.29
CDC42BPB-208ENST00000561271 PRKAR2BP31323 418 aa23.08■■□□□ 1.29
CDC42BPB-208ENST00000561271 SLC39A6Q13433 755 aa23.08■■□□□ 1.29
CDC42BPB-208ENST00000561271 RC3H1Q5TC82 1133 aaKnown RBP23.08■■□□□ 1.29
CDC42BPB-208ENST00000561271 PELP1Q8IZL8 1130 aaKnown RBP23.08■■□□□ 1.29
CDC42BPB-208ENST00000561271 RSPH6AQ9H0K4 717 aa23.08■■□□□ 1.29
CDC42BPB-208ENST00000561271 GPR162Q16538 588 aa23.07■■□□□ 1.28
CDC42BPB-208ENST00000561271 GAS2L2Q8NHY3 880 aa23.07■■□□□ 1.28
CDC42BPB-208ENST00000561271 CRKLP46109 303 aaKnown RBP23.06■■□□□ 1.28
CDC42BPB-208ENST00000561271 RPS6KA4O75676 772 aa23.05■■□□□ 1.28
CDC42BPB-208ENST00000561271 TRAPPC3LQ5T215 181 aa23.05■■□□□ 1.28
CDC42BPB-208ENST00000561271 NUDCQ9Y266 331 aa23.05■■□□□ 1.28
CDC42BPB-208ENST00000561271 GNAT3A8MTJ3 354 aa23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 U2AF1L5P0DN76 240 aaPredicted RBP23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 ADRA2BP18089 450 aa23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 U2AF1Q01081 240 aaKnown RBP eCLIP23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 DNAJC10Q8IXB1 793 aa23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 ARHGEF1Q92888 912 aaKnown RBP23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 PHACTR3Q96KR7 559 aa23.04■■□□□ 1.28
CDC42BPB-208ENST00000561271 SCN7AQ01118 1682 aa23.03■■□□□ 1.28
CDC42BPB-208ENST00000561271 CD2APQ9Y5K6 639 aa23.03■■□□□ 1.28
CDC42BPB-208ENST00000561271 MMP10P09238 476 aa23.02■■□□□ 1.28
CDC42BPB-208ENST00000561271 LAMB4A4D0S4 1761 aa23.01■■□□□ 1.27
CDC42BPB-208ENST00000561271 RFC4P35249 363 aa23.01■■□□□ 1.27
CDC42BPB-208ENST00000561271 IL17REQ8NFR9 667 aa23.01■■□□□ 1.27
CDC42BPB-208ENST00000561271 KDM3BQ7LBC6 1761 aa23.01■■□□□ 1.27
CDC42BPB-208ENST00000561271 BCORQ6W2J9 1755 aa23■■□□□ 1.27
CDC42BPB-208ENST00000561271 YBX3P16989 372 aaKnown RBP eCLIP23■■□□□ 1.27
CDC42BPB-208ENST00000561271 TEFQ10587 303 aa23■■□□□ 1.27
CDC42BPB-208ENST00000561271 ARFGEF1Q9Y6D6 1849 aa23■■□□□ 1.27
CDC42BPB-208ENST00000561271 CEMIPQ8WUJ3 1361 aa23■■□□□ 1.27
CDC42BPB-208ENST00000561271 GYS1P13807 737 aa22.99■■□□□ 1.27
CDC42BPB-208ENST00000561271 INTS5Q6P9B9 1019 aaKnown RBP22.99■■□□□ 1.27
CDC42BPB-208ENST00000561271 CCDC87Q9NVE4 849 aa22.99■■□□□ 1.27
CDC42BPB-208ENST00000561271 C10orf71Q711Q0 1435 aa22.99■■□□□ 1.27
CDC42BPB-208ENST00000561271 TTC5Q8N0Z6 440 aa22.98■■□□□ 1.27
CDC42BPB-208ENST00000561271 SRP68Q9UHB9 627 aaKnown RBP22.98■■□□□ 1.27
CDC42BPB-208ENST00000561271 USP42Q9H9J4 1324 aaKnown RBP22.98■■□□□ 1.27
CDC42BPB-208ENST00000561271 NRXN2Q9P2S2 1712 aa22.97■■□□□ 1.27
CDC42BPB-208ENST00000561271 CYP19A1P11511 503 aaPredicted RBP22.97■■□□□ 1.27
CDC42BPB-208ENST00000561271 SOS1Q07889 1333 aaPredicted RBP22.97■■□□□ 1.27
CDC42BPB-208ENST00000561271 PXDNLA1KZ92 1463 aa22.97■■□□□ 1.27
CDC42BPB-208ENST00000561271 DLEC1Q9Y238 1755 aa22.96■■□□□ 1.27
CDC42BPB-208ENST00000561271 NLGN1Q8N2Q7 840 aa22.96■■□□□ 1.27
CDC42BPB-208ENST00000561271 WWC3Q9ULE0 1092 aa22.96■■□□□ 1.27
CDC42BPB-208ENST00000561271 COL15A1P39059 1388 aa22.96■■□□□ 1.27
CDC42BPB-208ENST00000561271 FCHSD2O94868 740 aa22.95■■□□□ 1.26
CDC42BPB-208ENST00000561271 ZBTB1Q9Y2K1 713 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms