RNA–Protein interactions for RNA: ENST00000561266.5

TPM1-230, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-230ENST00000561266 AKT1S1Q96B36 256 aa18.58■□□□□ 0.56
TPM1-230ENST00000561266 CCNL1Q9UK58 526 aaPredicted RBP18.58■□□□□ 0.56
TPM1-230ENST00000561266 CABP4P57796 275 aa18.57■□□□□ 0.56
TPM1-230ENST00000561266 SIPA1L3O60292 1781 aaPredicted RBP18.57■□□□□ 0.56
TPM1-230ENST00000561266 MRC1P22897 1456 aa18.57■□□□□ 0.56
TPM1-230ENST00000561266 MAP3K5Q99683 1374 aa18.55■□□□□ 0.56
TPM1-230ENST00000561266 ITPK1Q13572 414 aa18.55■□□□□ 0.56
TPM1-230ENST00000561266 GAS2L2Q8NHY3 880 aa18.55■□□□□ 0.56
TPM1-230ENST00000561266 SMARCC1Q92922 1105 aaPredicted RBP18.55■□□□□ 0.56
TPM1-230ENST00000561266 SLC52A2Q9HAB3 445 aa18.55■□□□□ 0.56
TPM1-230ENST00000561266 STK32BQ9NY57 414 aa18.55■□□□□ 0.56
TPM1-230ENST00000561266 LOC102724428A0A0B4J2F2 783 aa18.54■□□□□ 0.56
TPM1-230ENST00000561266 GNAT3A8MTJ3 354 aa18.54■□□□□ 0.56
TPM1-230ENST00000561266 SIK1P57059 783 aa18.54■□□□□ 0.56
TPM1-230ENST00000561266 SMIM5Q71RC9 77 aa18.54■□□□□ 0.56
TPM1-230ENST00000561266 AMIGO3Q86WK7 504 aa18.54■□□□□ 0.56
TPM1-230ENST00000561266 C4BP0C0L5 1744 aa18.53■□□□□ 0.56
TPM1-230ENST00000561266 SLC39A6Q13433 755 aa18.53■□□□□ 0.56
TPM1-230ENST00000561266 QSER1Q2KHR3 1735 aa18.53■□□□□ 0.56
TPM1-230ENST00000561266 LINC00116Q8NCU8 138 aa18.53■□□□□ 0.56
TPM1-230ENST00000561266 DCTN1Q14203 1278 aa18.52■□□□□ 0.56
TPM1-230ENST00000561266 MYH14Q7Z406 1995 aaKnown RBP18.51■□□□□ 0.55
TPM1-230ENST00000561266 RBM42Q9BTD8 480 aaKnown RBP18.51■□□□□ 0.55
TPM1-230ENST00000561266 UBR3Q6ZT12 1888 aa18.51■□□□□ 0.55
TPM1-230ENST00000561266 CEMIPQ8WUJ3 1361 aa18.51■□□□□ 0.55
TPM1-230ENST00000561266 TJP1Q07157 1748 aa18.51■□□□□ 0.55
TPM1-230ENST00000561266 ZNF831Q5JPB2 1677 aa18.5■□□□□ 0.55
TPM1-230ENST00000561266 PNPLA7Q6ZV29 1317 aa18.5■□□□□ 0.55
TPM1-230ENST00000561266 LRP5O75197 1615 aa18.5■□□□□ 0.55
TPM1-230ENST00000561266 COL5A3P25940 1745 aaPredicted RBP18.5■□□□□ 0.55
TPM1-230ENST00000561266 MCM10Q7L590 875 aa18.5■□□□□ 0.55
TPM1-230ENST00000561266 ADAMTS8Q9UP79 889 aa18.5■□□□□ 0.55
TPM1-230ENST00000561266 UBR2Q8IWV8 1755 aa18.5■□□□□ 0.55
TPM1-230ENST00000561266 KCPQ6ZWJ8 1503 aa18.49■□□□□ 0.55
TPM1-230ENST00000561266 PTCD1O75127 700 aaKnown RBP18.49■□□□□ 0.55
TPM1-230ENST00000561266 ATP6V1AP38606 617 aa18.49■□□□□ 0.55
TPM1-230ENST00000561266 CCDC146Q8IYE0 955 aa18.49■□□□□ 0.55
TPM1-230ENST00000561266 KCNQ3O43525 872 aa18.48■□□□□ 0.55
TPM1-230ENST00000561266 ZBTB7AO95365 584 aa18.48■□□□□ 0.55
TPM1-230ENST00000561266 NFE2L2Q16236 605 aa18.47■□□□□ 0.55
TPM1-230ENST00000561266 TFCP2L1Q9NZI6 479 aa18.47■□□□□ 0.55
TPM1-230ENST00000561266 COL23A1Q86Y22 540 aaPredicted RBP18.46■□□□□ 0.55
TPM1-230ENST00000561266 THUMPD2Q9BTF0 503 aaKnown RBP18.46■□□□□ 0.55
TPM1-230ENST00000561266 ATF5Q9Y2D1 282 aaPredicted RBP18.45■□□□□ 0.54
TPM1-230ENST00000561266 CICQ96RK0 1608 aaPredicted RBP18.45■□□□□ 0.54
TPM1-230ENST00000561266 ANP32CO43423 234 aa18.44■□□□□ 0.54
TPM1-230ENST00000561266 TEFQ10587 303 aa18.44■□□□□ 0.54
TPM1-230ENST00000561266 RRP7AQ9Y3A4 280 aaKnown RBP18.44■□□□□ 0.54
TPM1-230ENST00000561266 COL24A1Q17RW2 1714 aa18.43■□□□□ 0.54
TPM1-230ENST00000561266 TMPOP42166 694 aaKnown RBP18.43■□□□□ 0.54
TPM1-230ENST00000561266 PTGER2P43116 358 aa18.43■□□□□ 0.54
TPM1-230ENST00000561266 WDR43Q15061 677 aaKnown RBP eCLIP18.43■□□□□ 0.54
TPM1-230ENST00000561266 DNAJC10Q8IXB1 793 aa18.43■□□□□ 0.54
TPM1-230ENST00000561266 HTATSF1O43719 755 aaKnown RBP18.42■□□□□ 0.54
TPM1-230ENST00000561266 ZNF496Q96IT1 587 aaPredicted RBP18.42■□□□□ 0.54
TPM1-230ENST00000561266 SGIP1Q9BQI5 828 aa18.42■□□□□ 0.54
TPM1-230ENST00000561266 MIS18AQ9NYP9 233 aa18.42■□□□□ 0.54
TPM1-230ENST00000561266 MAPK8IP3Q9UPT6 1336 aa18.42■□□□□ 0.54
TPM1-230ENST00000561266 ZNF790Q6PG37 636 aa18.41■□□□□ 0.54
TPM1-230ENST00000561266 RTF1Q92541 710 aaKnown RBP18.41■□□□□ 0.54
TPM1-230ENST00000561266 AK7Q96M32 723 aa18.41■□□□□ 0.54
TPM1-230ENST00000561266 SPON1Q9HCB6 807 aa18.41■□□□□ 0.54
TPM1-230ENST00000561266 PHF14O94880 888 aa18.4■□□□□ 0.54
TPM1-230ENST00000561266 RIPK4P57078 832 aa18.4■□□□□ 0.54
TPM1-230ENST00000561266 RUNDC1Q96C34 613 aa18.4■□□□□ 0.54
TPM1-230ENST00000561266 PNNQ9H307 717 aaKnown RBP18.4■□□□□ 0.54
TPM1-230ENST00000561266 SENP3-EIF4A1A0A087X0R7 540 aa18.39■□□□□ 0.53
TPM1-230ENST00000561266 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.39■□□□□ 0.53
TPM1-230ENST00000561266 BTBD11A6QL63 1104 aa18.39■□□□□ 0.53
TPM1-230ENST00000561266 GNPATO15228 680 aa18.39■□□□□ 0.53
TPM1-230ENST00000561266 NEUROD2Q15784 382 aa18.39■□□□□ 0.53
TPM1-230ENST00000561266 INTS5Q6P9B9 1019 aaKnown RBP18.39■□□□□ 0.53
TPM1-230ENST00000561266 PNISRQ8TF01 805 aaKnown RBP18.39■□□□□ 0.53
TPM1-230ENST00000561266 KDM3BQ7LBC6 1761 aa18.39■□□□□ 0.53
TPM1-230ENST00000561266 PRAMEF22A3QJZ6 481 aa18.38■□□□□ 0.53
TPM1-230ENST00000561266 NEFMP07197 916 aa18.38■□□□□ 0.53
TPM1-230ENST00000561266 CYP19A1P11511 503 aaPredicted RBP18.38■□□□□ 0.53
TPM1-230ENST00000561266 CRKLP46109 303 aaKnown RBP18.38■□□□□ 0.53
TPM1-230ENST00000561266 RC3H1Q5TC82 1133 aaKnown RBP18.38■□□□□ 0.53
TPM1-230ENST00000561266 MTFR1LQ9H019 292 aa18.38■□□□□ 0.53
TPM1-230ENST00000561266 TRIM35Q9UPQ4 493 aa18.38■□□□□ 0.53
TPM1-230ENST00000561266 CNTNAP4Q9C0A0 1308 aa18.38■□□□□ 0.53
TPM1-230ENST00000561266 C4AP0C0L4 1744 aa18.37■□□□□ 0.53
TPM1-230ENST00000561266 MSL1Q68DK7 614 aa18.37■□□□□ 0.53
TPM1-230ENST00000561266 MRS2Q9HD23 443 aa18.37■□□□□ 0.53
TPM1-230ENST00000561266 HEG1Q9ULI3 1381 aa18.37■□□□□ 0.53
TPM1-230ENST00000561266 MSH5O43196 834 aa18.36■□□□□ 0.53
TPM1-230ENST00000561266 TAF7Q15545 349 aaPredicted RBP18.36■□□□□ 0.53
TPM1-230ENST00000561266 APAF1O14727 1248 aa18.35■□□□□ 0.53
TPM1-230ENST00000561266 RPS6KA4O75676 772 aa18.35■□□□□ 0.53
TPM1-230ENST00000561266 TTC5Q8N0Z6 440 aa18.35■□□□□ 0.53
TPM1-230ENST00000561266 SSFA2P28290 1259 aa18.34■□□□□ 0.53
TPM1-230ENST00000561266 VSIG10Q8N0Z9 540 aa18.34■□□□□ 0.53
TPM1-230ENST00000561266 SLC16A10Q8TF71 515 aa18.34■□□□□ 0.53
TPM1-230ENST00000561266 ARHGEF1Q92888 912 aaKnown RBP18.34■□□□□ 0.53
TPM1-230ENST00000561266 ZBTB1Q9Y2K1 713 aa18.33■□□□□ 0.52
TPM1-230ENST00000561266 RTCBQ9Y3I0 505 aaKnown RBP18.33■□□□□ 0.52
TPM1-230ENST00000561266 USP16Q9Y5T5 823 aa18.33■□□□□ 0.52
TPM1-230ENST00000561266 FMNL2Q96PY5 1086 aa18.32■□□□□ 0.52
TPM1-230ENST00000561266 CCDC87Q9NVE4 849 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms