RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 CHMP4AQ9BY43 222 aa11.09□□□□□ -0.63
TRAF3-209ENST00000560463 TNS2Q63HR2 1409 aa11.09□□□□□ -0.63
TRAF3-209ENST00000560463 THSD7AQ9UPZ6 1657 aa11.08□□□□□ -0.64
TRAF3-209ENST00000560463 VAMP4O75379 141 aa11.08□□□□□ -0.64
TRAF3-209ENST00000560463 VPS72Q15906 364 aa11.08□□□□□ -0.64
TRAF3-209ENST00000560463 TWISTNBQ3B726 338 aaPredicted RBP11.08□□□□□ -0.64
TRAF3-209ENST00000560463 BARGINQ6ZT62 677 aa11.08□□□□□ -0.64
TRAF3-209ENST00000560463 USP35Q9P2H5 1018 aa11.08□□□□□ -0.64
TRAF3-209ENST00000560463 BRWD3Q6RI45 1802 aa11.07□□□□□ -0.64
TRAF3-209ENST00000560463 BTBD11A6QL63 1104 aa11.07□□□□□ -0.64
TRAF3-209ENST00000560463 ERVV-2B6SEH9 535 aa11.07□□□□□ -0.64
TRAF3-209ENST00000560463 EXOC5O00471 708 aa11.07□□□□□ -0.64
TRAF3-209ENST00000560463 BRPF1P55201 1214 aaPredicted RBP11.07□□□□□ -0.64
TRAF3-209ENST00000560463 MEX3CQ5U5Q3 659 aaKnown RBP11.07□□□□□ -0.64
TRAF3-209ENST00000560463 SLC52A2Q9HAB3 445 aa11.07□□□□□ -0.64
TRAF3-209ENST00000560463 BCAR3O75815 825 aa11.06□□□□□ -0.64
TRAF3-209ENST00000560463 HOXB7P09629 217 aa11.06□□□□□ -0.64
TRAF3-209ENST00000560463 MS4A1P11836 297 aa11.06□□□□□ -0.64
TRAF3-209ENST00000560463 C8orf58Q8NAV2 365 aa11.06□□□□□ -0.64
TRAF3-209ENST00000560463 GLI3P10071 1580 aa11.06□□□□□ -0.64
TRAF3-209ENST00000560463 KIF16BQ96L93 1317 aa11.06□□□□□ -0.64
TRAF3-209ENST00000560463 PDE3AQ14432 1141 aa11.05□□□□□ -0.64
TRAF3-209ENST00000560463 TSPYL6Q8N831 410 aa11.05□□□□□ -0.64
TRAF3-209ENST00000560463 SSH1Q8WYL5 1049 aa11.05□□□□□ -0.64
TRAF3-209ENST00000560463 SMC4Q9NTJ3 1288 aa11.05□□□□□ -0.64
TRAF3-209ENST00000560463 MIS18AQ9NYP9 233 aa11.05□□□□□ -0.64
TRAF3-209ENST00000560463 USP21Q9UK80 565 aa11.05□□□□□ -0.64
TRAF3-209ENST00000560463 IPO8O15397 1037 aaKnown RBP11.04□□□□□ -0.64
TRAF3-209ENST00000560463 CANXP27824 592 aaKnown RBP11.04□□□□□ -0.64
TRAF3-209ENST00000560463 DDB1Q16531 1140 aa11.04□□□□□ -0.64
TRAF3-209ENST00000560463 DDX54Q8TDD1 881 aaKnown RBP11.04□□□□□ -0.64
TRAF3-209ENST00000560463 CCDC9Q9Y3X0 531 aaKnown RBP11.04□□□□□ -0.64
TRAF3-209ENST00000560463 ZNF831Q5JPB2 1677 aa11.04□□□□□ -0.64
TRAF3-209ENST00000560463 HEG1Q9ULI3 1381 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 ELL2O00472 640 aaPredicted RBP11.03□□□□□ -0.64
TRAF3-209ENST00000560463 PLIN1O60240 522 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 CABP4P57796 275 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 EIF4A1P60842 406 aaKnown RBP11.03□□□□□ -0.64
TRAF3-209ENST00000560463 IRX6P78412 446 aaPredicted RBP11.03□□□□□ -0.64
TRAF3-209ENST00000560463 ZKSCAN2Q63HK3 967 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 NFATC2IPQ8NCF5 419 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 ARHGAP45Q92619 1136 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 AFF2P51816 1311 aa11.03□□□□□ -0.64
TRAF3-209ENST00000560463 CICQ96RK0 1608 aaPredicted RBP11.02□□□□□ -0.64
TRAF3-209ENST00000560463 ATRNO75882 1429 aa11.02□□□□□ -0.64
TRAF3-209ENST00000560463 NHSQ6T4R5 1651 aa11.02□□□□□ -0.64
TRAF3-209ENST00000560463 CCDC30Q5VVM6 783 aa11.02□□□□□ -0.65
TRAF3-209ENST00000560463 ZNF790Q6PG37 636 aa11.02□□□□□ -0.65
TRAF3-209ENST00000560463 MRPL50Q8N5N7 158 aaKnown RBP11.02□□□□□ -0.65
TRAF3-209ENST00000560463 FRAT1Q92837 279 aaPredicted RBP11.02□□□□□ -0.65
TRAF3-209ENST00000560463 BTAF1O14981 1849 aa11.02□□□□□ -0.65
TRAF3-209ENST00000560463 AFDNP55196 1824 aaKnown RBP11.02□□□□□ -0.65
TRAF3-209ENST00000560463 AAMPQ13685 434 aa11.01□□□□□ -0.65
TRAF3-209ENST00000560463 TTC5Q8N0Z6 440 aa11.01□□□□□ -0.65
TRAF3-209ENST00000560463 BCL2L13Q9BXK5 485 aa11.01□□□□□ -0.65
TRAF3-209ENST00000560463 STK31Q9BXU1 1019 aa11.01□□□□□ -0.65
TRAF3-209ENST00000560463 PPP4R2Q9NY27 417 aa11.01□□□□□ -0.65
TRAF3-209ENST00000560463 TRPC5Q9UL62 973 aaPredicted RBP11.01□□□□□ -0.65
TRAF3-209ENST00000560463 KRT24Q2M2I5 525 aa11□□□□□ -0.65
TRAF3-209ENST00000560463 ATF7IPQ6VMQ6 1270 aa11□□□□□ -0.65
TRAF3-209ENST00000560463 FBXO41Q8TF61 875 aa11□□□□□ -0.65
TRAF3-209ENST00000560463 GJD4Q96KN9 370 aaPredicted RBP11□□□□□ -0.65
TRAF3-209ENST00000560463 NOB1Q9ULX3 412 aaKnown RBP11□□□□□ -0.65
TRAF3-209ENST00000560463 PTPRCP08575 1304 aa11□□□□□ -0.65
TRAF3-209ENST00000560463 ARFGEF2Q9Y6D5 1785 aa11□□□□□ -0.65
TRAF3-209ENST00000560463 TAF1LQ8IZX4 1826 aa11□□□□□ -0.65
TRAF3-209ENST00000560463 KCPQ6ZWJ8 1503 aa10.99□□□□□ -0.65
TRAF3-209ENST00000560463 COL5A3P25940 1745 aaPredicted RBP10.99□□□□□ -0.65
TRAF3-209ENST00000560463 TJP1Q07157 1748 aa10.99□□□□□ -0.65
TRAF3-209ENST00000560463 GIGYF1O75420 1035 aaPredicted RBP10.99□□□□□ -0.65
TRAF3-209ENST00000560463 FAM98CQ17RN3 349 aaKnown RBP10.99□□□□□ -0.65
TRAF3-209ENST00000560463 FTSJ3Q8IY81 847 aaKnown RBP10.99□□□□□ -0.65
TRAF3-209ENST00000560463 FMNL2Q96PY5 1086 aa10.99□□□□□ -0.65
TRAF3-209ENST00000560463 TMOD3Q9NYL9 352 aa10.99□□□□□ -0.65
TRAF3-209ENST00000560463 BCL9O00512 1426 aa10.99□□□□□ -0.65
TRAF3-209ENST00000560463 LY75O60449 1722 aa10.98□□□□□ -0.65
TRAF3-209ENST00000560463 KCNQ3O43525 872 aa10.98□□□□□ -0.65
TRAF3-209ENST00000560463 ONECUT3O60422 494 aaPredicted RBP10.98□□□□□ -0.65
TRAF3-209ENST00000560463 C20orf194Q5TEA3 1177 aa10.98□□□□□ -0.65
TRAF3-209ENST00000560463 HDGFL1Q5TGJ6 251 aa10.98□□□□□ -0.65
TRAF3-209ENST00000560463 DZIP1LQ8IYY4 767 aaKnown RBP10.98□□□□□ -0.65
TRAF3-209ENST00000560463 API5Q9BZZ5 524 aaKnown RBP10.98□□□□□ -0.65
TRAF3-209ENST00000560463 NUP188Q5SRE5 1749 aa10.98□□□□□ -0.65
TRAF3-209ENST00000560463 NUP98P52948 1817 aa10.98□□□□□ -0.65
TRAF3-209ENST00000560463 SLC4A2P04920 1241 aa10.97□□□□□ -0.65
TRAF3-209ENST00000560463 SNRPA1P09661 255 aaKnown RBP10.97□□□□□ -0.65
TRAF3-209ENST00000560463 TRIM27P14373 513 aa10.97□□□□□ -0.65
TRAF3-209ENST00000560463 SLC39A6Q13433 755 aa10.97□□□□□ -0.65
TRAF3-209ENST00000560463 MARCH10Q8NA82 808 aaPredicted RBP10.97□□□□□ -0.65
TRAF3-209ENST00000560463 EXOC6Q8TAG9 804 aa10.97□□□□□ -0.65
TRAF3-209ENST00000560463 CRBNQ96SW2 442 aa10.97□□□□□ -0.65
TRAF3-209ENST00000560463 ANKRD36CQ5JPF3 1778 aa10.97□□□□□ -0.65
TRAF3-209ENST00000560463 MYH14Q7Z406 1995 aaKnown RBP10.96□□□□□ -0.65
TRAF3-209ENST00000560463 PXDNLA1KZ92 1463 aa10.96□□□□□ -0.65
TRAF3-209ENST00000560463 ZNF772Q68DY9 489 aaPredicted RBP10.96□□□□□ -0.65
TRAF3-209ENST00000560463 VSIG10Q8N0Z9 540 aa10.96□□□□□ -0.65
TRAF3-209ENST00000560463 ZNF496Q96IT1 587 aaPredicted RBP10.96□□□□□ -0.65
TRAF3-209ENST00000560463 CHMP4BQ9H444 224 aaKnown RBP10.96□□□□□ -0.65
TRAF3-209ENST00000560463 QTRT2Q9H974 415 aaKnown RBP10.96□□□□□ -0.65
TRAF3-209ENST00000560463 DBF4Q9UBU7 674 aaPredicted RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms