RNA–Protein interactions for RNA: ENST00000559754.1

SPG11-218, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 411 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-218ENST00000559754 CLUAP1Q96AJ1 413 aa8.03□□□□□ -1.12
SPG11-218ENST00000559754 A0A1B0GTH6 734 aa8.02□□□□□ -1.13
SPG11-218ENST00000559754 A6NJR5 290 aa8.02□□□□□ -1.13
SPG11-218ENST00000559754 USP17L5A8MUK1 530 aa8.02□□□□□ -1.13
SPG11-218ENST00000559754 NCOA4Q13772 614 aa8.02□□□□□ -1.13
SPG11-218ENST00000559754 PPARGC1BQ86YN6 1023 aaKnown RBP8.02□□□□□ -1.13
SPG11-218ENST00000559754 RHBDD1Q8TEB9 315 aa8.02□□□□□ -1.13
SPG11-218ENST00000559754 LORP23490 312 aaPredicted RBP8.01□□□□□ -1.13
SPG11-218ENST00000559754 GTF2IP78347 998 aa8.01□□□□□ -1.13
SPG11-218ENST00000559754 KRT76Q01546 638 aa8.01□□□□□ -1.13
SPG11-218ENST00000559754 TRIM50Q86XT4 487 aa8.01□□□□□ -1.13
SPG11-218ENST00000559754 FNBP4Q8N3X1 1017 aaPredicted RBP8.01□□□□□ -1.13
SPG11-218ENST00000559754 ADAMTS19Q8TE59 1207 aa8.01□□□□□ -1.13
SPG11-218ENST00000559754 ZNF837Q96EG3 531 aaPredicted RBP8.01□□□□□ -1.13
SPG11-218ENST00000559754 CUEDC1Q9NWM3 386 aaPredicted RBP8.01□□□□□ -1.13
SPG11-218ENST00000559754 BACH1O14867 736 aa8□□□□□ -1.13
SPG11-218ENST00000559754 PHKA2P46019 1235 aa8□□□□□ -1.13
SPG11-218ENST00000559754 SMTNP53814 917 aa8□□□□□ -1.13
SPG11-218ENST00000559754 C4orf17Q53FE4 359 aa8□□□□□ -1.13
SPG11-218ENST00000559754 PLEKHM2Q8IWE5 1019 aa8□□□□□ -1.13
SPG11-218ENST00000559754 TRERF1Q96PN7 1200 aa8□□□□□ -1.13
SPG11-218ENST00000559754 PCDHGA11Q9Y5H2 935 aa8□□□□□ -1.13
SPG11-218ENST00000559754 ATP9BO43861 1147 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 STAU1O95793 577 aaKnown RBP7.99□□□□□ -1.13
SPG11-218ENST00000559754 CSB-PGBD3P0DP91 1061 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 ATP1A2P50993 1020 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 PSME1Q06323 249 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 LBRQ14739 615 aaKnown RBP7.99□□□□□ -1.13
SPG11-218ENST00000559754 DBN1Q16643 649 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 RNFT1Q5M7Z0 435 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 PGBD3Q8N328 593 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 SLC4A9Q96Q91 983 aa7.99□□□□□ -1.13
SPG11-218ENST00000559754 NUCKS1Q9H1E3 243 aaKnown RBP7.99□□□□□ -1.13
SPG11-218ENST00000559754 DEPDC4Q8N2C3 294 aa7.98□□□□□ -1.13
SPG11-218ENST00000559754 GLMNQ92990 594 aa7.98□□□□□ -1.13
SPG11-218ENST00000559754 NIFKQ9BYG3 293 aaKnown RBP7.98□□□□□ -1.13
SPG11-218ENST00000559754 SERTAD1Q9UHV2 236 aa7.98□□□□□ -1.13
SPG11-218ENST00000559754 USP17L3A6NCW0 530 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 USP17L4A6NCW7 530 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 TMEM229AB2RXF0 380 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 SLURP2P0DP57 97 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 USP17L2Q6R6M4 530 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 TBC1D9Q6ZT07 1266 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 USP17L1Q7RTZ2 530 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 GTPBP3Q969Y2 492 aaKnown RBP7.97□□□□□ -1.13
SPG11-218ENST00000559754 UCN2Q96RP3 112 aa7.97□□□□□ -1.13
SPG11-218ENST00000559754 A6NJY4 79 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 CDK2AP1O14519 115 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 PLA2G4AP47712 749 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 SRSF11Q05519 484 aaKnown RBP7.96□□□□□ -1.14
SPG11-218ENST00000559754 MTFR1Q15390 333 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 C1orf216Q8TAB5 229 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 GPAMQ9HCL2 828 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 MBIPQ9NS73 344 aa7.96□□□□□ -1.14
SPG11-218ENST00000559754 MSX1P28360 303 aa7.95□□□□□ -1.14
SPG11-218ENST00000559754 EFHC2Q5JST6 749 aa7.95□□□□□ -1.14
SPG11-218ENST00000559754 NSFL1CQ9UNZ2 370 aaKnown RBP7.95□□□□□ -1.14
SPG11-218ENST00000559754 PHF24Q9UPV7 400 aa7.95□□□□□ -1.14
SPG11-218ENST00000559754 GAS6Q14393 721 aa7.94□□□□□ -1.14
SPG11-218ENST00000559754 CALR3Q96L12 384 aaKnown RBP7.94□□□□□ -1.14
SPG11-218ENST00000559754 CFHR5Q9BXR6 569 aa7.94□□□□□ -1.14
SPG11-218ENST00000559754 ZNF358Q9NW07 568 aa7.94□□□□□ -1.14
SPG11-218ENST00000559754 GPR25O00155 361 aa7.93□□□□□ -1.14
SPG11-218ENST00000559754 ADAMTS2O95450 1211 aa7.93□□□□□ -1.14
SPG11-218ENST00000559754 NBPF1Q3BBV0 1214 aa7.93□□□□□ -1.14
SPG11-218ENST00000559754 LARGE2Q8N3Y3 721 aa7.93□□□□□ -1.14
SPG11-218ENST00000559754 SVOPQ8N4V2 548 aa7.93□□□□□ -1.14
SPG11-218ENST00000559754 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.93□□□□□ -1.14
SPG11-218ENST00000559754 CRISPLD1Q9H336 500 aa7.93□□□□□ -1.14
SPG11-218ENST00000559754 DNAAF2Q9NVR5 837 aaKnown RBP7.93□□□□□ -1.14
SPG11-218ENST00000559754 MKRN1Q9UHC7 482 aaKnown RBP7.93□□□□□ -1.14
SPG11-218ENST00000559754 RBM19Q9Y4C8 960 aaKnown RBP7.93□□□□□ -1.14
SPG11-218ENST00000559754 PALM3A6NDB9 673 aaPredicted RBP7.92□□□□□ -1.14
SPG11-218ENST00000559754 TATP17735 454 aaPredicted RBP7.92□□□□□ -1.14
SPG11-218ENST00000559754 ZNF385CQ66K41 422 aaPredicted RBP7.92□□□□□ -1.14
SPG11-218ENST00000559754 CCDC102BQ68D86 513 aa7.92□□□□□ -1.14
SPG11-218ENST00000559754 AIDAQ96BJ3 306 aa7.92□□□□□ -1.14
SPG11-218ENST00000559754 RUBCNLQ9H714 662 aa7.92□□□□□ -1.14
SPG11-218ENST00000559754 CABP1Q9NZU7 370 aa7.92□□□□□ -1.14
SPG11-218ENST00000559754 TFIP11Q9UBB9 837 aaKnown RBP7.92□□□□□ -1.14
SPG11-218ENST00000559754 IQSEC3Q9UPP2 1182 aaPredicted RBP7.92□□□□□ -1.14
SPG11-218ENST00000559754 MX2P20592 715 aa7.91□□□□□ -1.14
SPG11-218ENST00000559754 MAP3K10Q02779 954 aa7.91□□□□□ -1.14
SPG11-218ENST00000559754 FIGNL1Q6PIW4 674 aa7.91□□□□□ -1.14
SPG11-218ENST00000559754 OGFOD1Q8N543 542 aa7.91□□□□□ -1.14
SPG11-218ENST00000559754 TPCN2Q8NHX9 752 aa7.91□□□□□ -1.14
SPG11-218ENST00000559754 ZDHHC3Q9NYG2 299 aa7.91□□□□□ -1.14
SPG11-218ENST00000559754 SCHIP1Q9P0W5 487 aaPredicted RBP7.91□□□□□ -1.14
SPG11-218ENST00000559754 IGF1RP08069 1367 aa7.9□□□□□ -1.14
SPG11-218ENST00000559754 M0R2N6 131 aa7.9□□□□□ -1.14
SPG11-218ENST00000559754 ZBTB7BO15156 539 aaPredicted RBP7.9□□□□□ -1.14
SPG11-218ENST00000559754 MAP2K3P46734 347 aa7.9□□□□□ -1.14
SPG11-218ENST00000559754 CLDN10P78369 228 aa7.9□□□□□ -1.14
SPG11-218ENST00000559754 NLRP8Q86W28 1048 aa7.9□□□□□ -1.14
SPG11-218ENST00000559754 ENAMQ9NRM1 1142 aa7.9□□□□□ -1.14
SPG11-218ENST00000559754 MAFBQ9Y5Q3 323 aaPredicted RBP7.9□□□□□ -1.14
SPG11-218ENST00000559754 THBS1P07996 1170 aa7.89□□□□□ -1.15
SPG11-218ENST00000559754 ZNF295-AS1Q8N0V1 137 aa7.89□□□□□ -1.15
SPG11-218ENST00000559754 SIX5Q8N196 739 aa7.89□□□□□ -1.15
SPG11-218ENST00000559754 PPP1R12CQ9BZL4 782 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms