RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 NHSQ6T4R5 1651 aa12.05□□□□□ -0.48
LDLR-210ENST00000559340 CEMIPQ8WUJ3 1361 aa12.05□□□□□ -0.48
LDLR-210ENST00000559340 LRP5O75197 1615 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 KDM6AO15550 1401 aaPredicted RBP12.04□□□□□ -0.48
LDLR-210ENST00000559340 SRCAPQ6ZRS2 3230 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 TRIM37O94972 964 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 GNAI1P63096 354 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 WWC1Q8IX03 1113 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 NFATC2IPQ8NCF5 419 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 SIPA1L3O60292 1781 aaPredicted RBP12.04□□□□□ -0.48
LDLR-210ENST00000559340 IL16Q14005 1332 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 BTAF1O14981 1849 aa12.04□□□□□ -0.48
LDLR-210ENST00000559340 TOGARAM1Q9Y4F4 1720 aa12.03□□□□□ -0.48
LDLR-210ENST00000559340 DCTN1Q14203 1278 aa12.03□□□□□ -0.48
LDLR-210ENST00000559340 TTC5Q8N0Z6 440 aa12.03□□□□□ -0.48
LDLR-210ENST00000559340 BTBD11A6QL63 1104 aa12.02□□□□□ -0.49
LDLR-210ENST00000559340 PIGBQ92521 554 aa12.02□□□□□ -0.49
LDLR-210ENST00000559340 IFT57Q9NWB7 429 aa12.02□□□□□ -0.49
LDLR-210ENST00000559340 MRC1P22897 1456 aa12.02□□□□□ -0.49
LDLR-210ENST00000559340 PSDA5PKW4 1024 aaPredicted RBP12.01□□□□□ -0.49
LDLR-210ENST00000559340 KCNQ2O43526 872 aa12.01□□□□□ -0.49
LDLR-210ENST00000559340 EN1Q05925 392 aaPredicted RBP12.01□□□□□ -0.49
LDLR-210ENST00000559340 GOLGA2Q08379 1002 aa12.01□□□□□ -0.49
LDLR-210ENST00000559340 CFAP44Q96MT7 982 aa12.01□□□□□ -0.49
LDLR-210ENST00000559340 LAS1LQ9Y4W2 734 aaKnown RBP12.01□□□□□ -0.49
LDLR-210ENST00000559340 APBA3O96018 575 aa12□□□□□ -0.49
LDLR-210ENST00000559340 THUMPD2Q9BTF0 503 aaKnown RBP12□□□□□ -0.49
LDLR-210ENST00000559340 CHMP4AQ9BY43 222 aa12□□□□□ -0.49
LDLR-210ENST00000559340 MYH16Q9H6N6 1097 aa12□□□□□ -0.49
LDLR-210ENST00000559340 TSPYL4Q9UJ04 414 aa12□□□□□ -0.49
LDLR-210ENST00000559340 CHL1O00533 1208 aa11.99□□□□□ -0.49
LDLR-210ENST00000559340 PLSCR1O15162 318 aa11.99□□□□□ -0.49
LDLR-210ENST00000559340 ZNF790Q6PG37 636 aa11.99□□□□□ -0.49
LDLR-210ENST00000559340 ZBED9Q6R2W3 1325 aa11.99□□□□□ -0.49
LDLR-210ENST00000559340 CACNA1FO60840 1977 aa11.99□□□□□ -0.49
LDLR-210ENST00000559340 KDM3BQ7LBC6 1761 aa11.98□□□□□ -0.49
LDLR-210ENST00000559340 E9PSI1 815 aa11.98□□□□□ -0.49
LDLR-210ENST00000559340 FMNL2Q96PY5 1086 aa11.98□□□□□ -0.49
LDLR-210ENST00000559340 TEX13AQ9BXU3 409 aaPredicted RBP11.98□□□□□ -0.49
LDLR-210ENST00000559340 ATG3Q9NT62 314 aa11.98□□□□□ -0.49
LDLR-210ENST00000559340 RGPD3A6NKT7 1758 aaPredicted RBP11.97□□□□□ -0.49
LDLR-210ENST00000559340 RGPD4Q7Z3J3 1758 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 LY75O60449 1722 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 TNS1Q9HBL0 1735 aaKnown RBP11.97□□□□□ -0.49
LDLR-210ENST00000559340 ZNF521Q96K83 1311 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 SENP3-EIF4A1A0A087X0R7 540 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 ZNF853P0CG23 659 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 R3HDM1Q15032 1099 aaKnown RBP11.97□□□□□ -0.49
LDLR-210ENST00000559340 SLC27A3Q5K4L6 730 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 VSIG10Q8N0Z9 540 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 ASAP1Q9ULH1 1129 aa11.97□□□□□ -0.49
LDLR-210ENST00000559340 PALLDQ8WX93 1383 aa11.96□□□□□ -0.49
LDLR-210ENST00000559340 SOS1Q07889 1333 aaPredicted RBP11.96□□□□□ -0.49
LDLR-210ENST00000559340 SLC39A6Q13433 755 aa11.96□□□□□ -0.49
LDLR-210ENST00000559340 EZH2Q15910 746 aaKnown RBP11.96□□□□□ -0.49
LDLR-210ENST00000559340 CAMKK2Q96RR4 588 aa11.96□□□□□ -0.49
LDLR-210ENST00000559340 RBM42Q9BTD8 480 aaKnown RBP11.96□□□□□ -0.49
LDLR-210ENST00000559340 MIS18AQ9NYP9 233 aa11.96□□□□□ -0.49
LDLR-210ENST00000559340 UBR2Q8IWV8 1755 aa11.96□□□□□ -0.49
LDLR-210ENST00000559340 ZNF831Q5JPB2 1677 aa11.96□□□□□ -0.5
LDLR-210ENST00000559340 PAPPAQ13219 1627 aa11.96□□□□□ -0.5
LDLR-210ENST00000559340 LOC102724428A0A0B4J2F2 783 aa11.95□□□□□ -0.5
LDLR-210ENST00000559340 SNRPA1P09661 255 aaKnown RBP11.95□□□□□ -0.5
LDLR-210ENST00000559340 SIK1P57059 783 aa11.95□□□□□ -0.5
LDLR-210ENST00000559340 MBIPQ9NS73 344 aa11.95□□□□□ -0.5
LDLR-210ENST00000559340 PTCD1O75127 700 aaKnown RBP11.94□□□□□ -0.5
LDLR-210ENST00000559340 STARD3NLO95772 234 aa11.94□□□□□ -0.5
LDLR-210ENST00000559340 ATP6V1AP38606 617 aa11.94□□□□□ -0.5
LDLR-210ENST00000559340 EIF4A1P60842 406 aaKnown RBP11.94□□□□□ -0.5
LDLR-210ENST00000559340 SLFN5Q08AF3 891 aa11.94□□□□□ -0.5
LDLR-210ENST00000559340 PTF1AQ7RTS3 328 aa11.94□□□□□ -0.5
LDLR-210ENST00000559340 YTHDC1Q96MU7 727 aaKnown RBP11.94□□□□□ -0.5
LDLR-210ENST00000559340 CCNL1Q9UK58 526 aaPredicted RBP11.94□□□□□ -0.5
LDLR-210ENST00000559340 HEG1Q9ULI3 1381 aa11.93□□□□□ -0.5
LDLR-210ENST00000559340 TAF1LQ8IZX4 1826 aa11.93□□□□□ -0.5
LDLR-210ENST00000559340 HOXB7P09629 217 aa11.93□□□□□ -0.5
LDLR-210ENST00000559340 TXNRD1Q16881 649 aa11.93□□□□□ -0.5
LDLR-210ENST00000559340 ZNF496Q96IT1 587 aaPredicted RBP11.93□□□□□ -0.5
LDLR-210ENST00000559340 KCNQ3O43525 872 aa11.92□□□□□ -0.5
LDLR-210ENST00000559340 NBPF14Q5TI25 921 aa11.92□□□□□ -0.5
LDLR-210ENST00000559340 FANCIQ9NVI1 1328 aa11.91□□□□□ -0.5
LDLR-210ENST00000559340 GIGYF1O75420 1035 aaPredicted RBP11.91□□□□□ -0.5
LDLR-210ENST00000559340 CT47B1P0C2W7 299 aaPredicted RBP11.91□□□□□ -0.5
LDLR-210ENST00000559340 NPM2Q86SE8 214 aaKnown RBP11.91□□□□□ -0.5
LDLR-210ENST00000559340 TRMT2AQ8IZ69 625 aaKnown RBP11.91□□□□□ -0.5
LDLR-210ENST00000559340 KCPQ6ZWJ8 1503 aa11.91□□□□□ -0.5
LDLR-210ENST00000559340 RC3H1Q5TC82 1133 aaKnown RBP11.9□□□□□ -0.5
LDLR-210ENST00000559340 DUSP27Q5VZP5 1158 aa11.9□□□□□ -0.5
LDLR-210ENST00000559340 TSR2Q969E8 191 aaKnown RBP11.9□□□□□ -0.5
LDLR-210ENST00000559340 ZNF428Q96B54 188 aa11.9□□□□□ -0.5
LDLR-210ENST00000559340 CDCA7LQ96GN5 454 aa11.9□□□□□ -0.5
LDLR-210ENST00000559340 LAMB4A4D0S4 1761 aa11.9□□□□□ -0.51
LDLR-210ENST00000559340 CICQ96RK0 1608 aaPredicted RBP11.89□□□□□ -0.51
LDLR-210ENST00000559340 EXOSC9Q06265 439 aaKnown RBP11.89□□□□□ -0.51
LDLR-210ENST00000559340 TWISTNBQ3B726 338 aaPredicted RBP11.89□□□□□ -0.51
LDLR-210ENST00000559340 CCDC30Q5VVM6 783 aa11.89□□□□□ -0.51
LDLR-210ENST00000559340 DNAJC10Q8IXB1 793 aa11.89□□□□□ -0.51
LDLR-210ENST00000559340 SPINK5Q9NQ38 1064 aaPredicted RBP11.89□□□□□ -0.51
LDLR-210ENST00000559340 C5P01031 1676 aa11.89□□□□□ -0.51
LDLR-210ENST00000559340 MYH14Q7Z406 1995 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms