RNA–Protein interactions for RNA: ENST00000559002.5

CHRNA3-204, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 1 (best)

Gene CHRNA3, Length 333 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-204ENST00000559002 TSPYL4Q9UJ04 414 aa8.59□□□□□ -1.03
CHRNA3-204ENST00000559002 TOGARAM1Q9Y4F4 1720 aa8.59□□□□□ -1.03
CHRNA3-204ENST00000559002 DLG5Q8TDM6 1919 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 ZNF521Q96K83 1311 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 KCNQ2O43526 872 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 TRIM37O94972 964 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 PIGBQ92521 554 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 CFAP44Q96MT7 982 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 BCL11BQ9C0K0 894 aaPredicted RBP8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 MYH16Q9H6N6 1097 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 EP400Q96L91 3159 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 SCN11AQ9UI33 1791 aa8.58□□□□□ -1.04
CHRNA3-204ENST00000559002 NHSQ6T4R5 1651 aa8.57□□□□□ -1.04
CHRNA3-204ENST00000559002 E9PSI1 815 aa8.57□□□□□ -1.04
CHRNA3-204ENST00000559002 SF3B2Q13435 895 aaKnown RBP8.57□□□□□ -1.04
CHRNA3-204ENST00000559002 SMARCC1Q92922 1105 aaPredicted RBP8.57□□□□□ -1.04
CHRNA3-204ENST00000559002 BABAM1Q9NWV8 329 aa8.57□□□□□ -1.04
CHRNA3-204ENST00000559002 MIS18AQ9NYP9 233 aa8.57□□□□□ -1.04
CHRNA3-204ENST00000559002 CHL1O00533 1208 aa8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 ZNF853P0CG23 659 aa8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 SLC39A6Q13433 755 aa8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 ZNF790Q6PG37 636 aa8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 TSR2Q969E8 191 aaKnown RBP8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 MBIPQ9NS73 344 aa8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 PALLDQ8WX93 1383 aa8.56□□□□□ -1.04
CHRNA3-204ENST00000559002 FANCIQ9NVI1 1328 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 PTCD1O75127 700 aaKnown RBP8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 APBA3O96018 575 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 SLFN5Q08AF3 891 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 PTF1AQ7RTS3 328 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 CDCA7LQ96GN5 454 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 FMNL2Q96PY5 1086 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 RBM42Q9BTD8 480 aaKnown RBP8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 SPINK5Q9NQ38 1064 aaPredicted RBP8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 ATG3Q9NT62 314 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 ASAP1Q9ULH1 1129 aa8.55□□□□□ -1.04
CHRNA3-204ENST00000559002 KAT6BQ8WYB5 2073 aa8.54□□□□□ -1.04
CHRNA3-204ENST00000559002 KCNQ3O43525 872 aa8.54□□□□□ -1.04
CHRNA3-204ENST00000559002 ITGB4P16144 1822 aa8.54□□□□□ -1.04
CHRNA3-204ENST00000559002 SIPA1L3O60292 1781 aaPredicted RBP8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 BTAF1O14981 1849 aa8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 VIRMAQ69YN4 1812 aaKnown RBP8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 BAG6P46379 1132 aa8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 EIF4A1P60842 406 aaKnown RBP8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 ILDR2Q71H61 639 aa8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 CCDC125Q86Z20 511 aa8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 ZNF496Q96IT1 587 aaPredicted RBP8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 CCNL1Q9UK58 526 aaPredicted RBP8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 PAPPAQ13219 1627 aa8.53□□□□□ -1.04
CHRNA3-204ENST00000559002 SBF2Q86WG5 1849 aa8.52□□□□□ -1.04
CHRNA3-204ENST00000559002 HEG1Q9ULI3 1381 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 LOC102724428A0A0B4J2F2 783 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 SNRPA1P09661 255 aaKnown RBP8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 ATP6V1AP38606 617 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 SIK1P57059 783 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 EXOSC9Q06265 439 aaKnown RBP8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 DUSP27Q5VZP5 1158 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 VSIG10Q8N0Z9 540 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 KCPQ6ZWJ8 1503 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 KDM3BQ7LBC6 1761 aa8.52□□□□□ -1.05
CHRNA3-204ENST00000559002 ELL2O00472 640 aaPredicted RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 PLSCR1O15162 318 aa8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 HOXB7P09629 217 aa8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 HMGB2P26583 209 aaKnown RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 KRT24Q2M2I5 525 aa8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 TWISTNBQ3B726 338 aaPredicted RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 SLC27A3Q5K4L6 730 aa8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 TRMT2AQ8IZ69 625 aaKnown RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 TEX13AQ9BXU3 409 aaPredicted RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 CHMP4AQ9BY43 222 aa8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 TNS1Q9HBL0 1735 aaKnown RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 SOS1Q07889 1333 aaPredicted RBP8.51□□□□□ -1.05
CHRNA3-204ENST00000559002 GIGYF1O75420 1035 aaPredicted RBP8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 STARD3NLO95772 234 aa8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 EN1Q05925 392 aaPredicted RBP8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 TXNRD1Q16881 649 aa8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 HDGFL1Q5TGJ6 251 aa8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 DNAJC10Q8IXB1 793 aa8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 C8orf58Q8NAV2 365 aa8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 UPF1Q92900 1129 aaKnown RBP eCLIP8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 UBR2Q8IWV8 1755 aa8.5□□□□□ -1.05
CHRNA3-204ENST00000559002 PRAMEF22A3QJZ6 481 aa8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 CT47B1P0C2W7 299 aaPredicted RBP8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 EIF2S2P20042 333 aaKnown RBP8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 ITPK1Q13572 414 aa8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 EZH2Q15910 746 aaKnown RBP8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 DEFB132Q7Z7B7 95 aa8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 TSPYL6Q8N831 410 aa8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 SLC4A9Q96Q91 983 aa8.49□□□□□ -1.05
CHRNA3-204ENST00000559002 KCNQ4P56696 695 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 CCDC30Q5VVM6 783 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 NPM2Q86SE8 214 aaKnown RBP8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 LINC00116Q8NCU8 138 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 NECTIN2Q92692 538 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 AK7Q96M32 723 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 CAMKK2Q96RR4 588 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 STK31Q9BXU1 1019 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 USP16Q9Y5T5 823 aa8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 RGPD3A6NKT7 1758 aaPredicted RBP8.48□□□□□ -1.05
CHRNA3-204ENST00000559002 RGPD4Q7Z3J3 1758 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms