RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 MLECQ14165 292 aa11.84□□□□□ -0.51
SPG11-213ENST00000558988 TRMT44Q8IYL2 757 aaKnown RBP11.84□□□□□ -0.51
SPG11-213ENST00000558988 KRTAP4-12Q9BQ66 201 aa11.84□□□□□ -0.51
SPG11-213ENST00000558988 PGPEP1Q9NXJ5 209 aa11.84□□□□□ -0.51
SPG11-213ENST00000558988 ARHGAP5Q13017 1502 aa11.84□□□□□ -0.51
SPG11-213ENST00000558988 PLCH2O75038 1416 aa11.84□□□□□ -0.51
SPG11-213ENST00000558988 TROQ12816 1431 aaPredicted RBP11.84□□□□□ -0.51
SPG11-213ENST00000558988 ZFYVE16Q7Z3T8 1539 aa11.83□□□□□ -0.52
SPG11-213ENST00000558988 EFCAB2Q5VUJ9 269 aa11.83□□□□□ -0.52
SPG11-213ENST00000558988 MBIPQ9NS73 344 aa11.83□□□□□ -0.52
SPG11-213ENST00000558988 YEATS2Q9ULM3 1422 aa11.83□□□□□ -0.52
SPG11-213ENST00000558988 MADDQ8WXG6 1647 aa11.82□□□□□ -0.52
SPG11-213ENST00000558988 RNF217Q8TC41 542 aa11.82□□□□□ -0.52
SPG11-213ENST00000558988 POLMQ9NP87 494 aaPredicted RBP11.82□□□□□ -0.52
SPG11-213ENST00000558988 BCORL1Q5H9F3 1711 aa11.82□□□□□ -0.52
SPG11-213ENST00000558988 PTPRMP28827 1452 aa11.82□□□□□ -0.52
SPG11-213ENST00000558988 ADAMTSL3P82987 1691 aa11.81□□□□□ -0.52
SPG11-213ENST00000558988 POGZQ7Z3K3 1410 aa11.81□□□□□ -0.52
SPG11-213ENST00000558988 SSTR3P32745 418 aaPredicted RBP11.81□□□□□ -0.52
SPG11-213ENST00000558988 RELBQ01201 579 aa11.81□□□□□ -0.52
SPG11-213ENST00000558988 RIMS1Q86UR5 1692 aaKnown RBP11.81□□□□□ -0.52
SPG11-213ENST00000558988 CASKIN1Q8WXD9 1431 aa11.8□□□□□ -0.52
SPG11-213ENST00000558988 ACDQ96AP0 544 aa11.8□□□□□ -0.52
SPG11-213ENST00000558988 ZMYM4Q5VZL5 1548 aa11.8□□□□□ -0.52
SPG11-213ENST00000558988 CCDC18Q5T9S5 1454 aa11.79□□□□□ -0.52
SPG11-213ENST00000558988 MAGEB6P1A0A0J9YX57 407 aa11.79□□□□□ -0.52
SPG11-213ENST00000558988 PER1O15534 1290 aaPredicted RBP11.78□□□□□ -0.52
SPG11-213ENST00000558988 ZNF777Q9ULD5 760 aaPredicted RBP11.78□□□□□ -0.52
SPG11-213ENST00000558988 SIGLEC1Q9BZZ2 1709 aa11.77□□□□□ -0.52
SPG11-213ENST00000558988 FYCO1Q9BQS8 1478 aa11.77□□□□□ -0.52
SPG11-213ENST00000558988 GPR25O00155 361 aa11.77□□□□□ -0.53
SPG11-213ENST00000558988 SH3BP5LQ7L8J4 393 aa11.77□□□□□ -0.53
SPG11-213ENST00000558988 AFAP1Q8N556 730 aa11.77□□□□□ -0.53
SPG11-213ENST00000558988 PCDHB15Q9Y5E8 787 aa11.77□□□□□ -0.53
SPG11-213ENST00000558988 ZNF395Q9H8N7 513 aaPredicted RBP11.76□□□□□ -0.53
SPG11-213ENST00000558988 MAGI2Q86UL8 1455 aa11.76□□□□□ -0.53
SPG11-213ENST00000558988 CDC42BPBQ9Y5S2 1711 aa11.75□□□□□ -0.53
SPG11-213ENST00000558988 SNRPNP63162 240 aaKnown RBP11.75□□□□□ -0.53
SPG11-213ENST00000558988 ARMC2Q8NEN0 867 aa11.75□□□□□ -0.53
SPG11-213ENST00000558988 ZNF518AQ6AHZ1 1483 aa11.75□□□□□ -0.53
SPG11-213ENST00000558988 ZNF837Q96EG3 531 aaPredicted RBP11.74□□□□□ -0.53
SPG11-213ENST00000558988 CARD14Q9BXL6 1004 aa11.74□□□□□ -0.53
SPG11-213ENST00000558988 KRTAP9-9Q9BYP9 154 aa11.74□□□□□ -0.53
SPG11-213ENST00000558988 KRTAP9-4Q9BYQ2 154 aa11.74□□□□□ -0.53
SPG11-213ENST00000558988 PREX2Q70Z35 1606 aa11.74□□□□□ -0.53
SPG11-213ENST00000558988 FER1L4A9Z1Z3 1794 aa11.73□□□□□ -0.53
SPG11-213ENST00000558988 ATP10AO60312 1499 aa11.73□□□□□ -0.53
SPG11-213ENST00000558988 C9orf84Q5VXU9 1444 aa11.73□□□□□ -0.53
SPG11-213ENST00000558988 HRCP23327 699 aa11.72□□□□□ -0.53
SPG11-213ENST00000558988 ITGB7P26010 798 aa11.72□□□□□ -0.53
SPG11-213ENST00000558988 CDC42BPAQ5VT25 1732 aa11.72□□□□□ -0.53
SPG11-213ENST00000558988 CEP162Q5TB80 1403 aa11.71□□□□□ -0.53
SPG11-213ENST00000558988 TRAPPC8Q9Y2L5 1435 aa11.71□□□□□ -0.53
SPG11-213ENST00000558988 MTUS2Q5JR59 1369 aa11.71□□□□□ -0.53
SPG11-213ENST00000558988 COL8A1P27658 744 aa11.71□□□□□ -0.53
SPG11-213ENST00000558988 HSPA2P54652 639 aa11.71□□□□□ -0.53
SPG11-213ENST00000558988 NBPF14Q5TI25 921 aa11.71□□□□□ -0.53
SPG11-213ENST00000558988 FOXD4L5Q5VV16 416 aaPredicted RBP11.71□□□□□ -0.53
SPG11-213ENST00000558988 RSBN1LQ6PCB5 846 aaPredicted RBP11.71□□□□□ -0.53
SPG11-213ENST00000558988 ABCC1P33527 1531 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 GJA5P36382 358 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 CEBPAP49715 358 aaPredicted RBP11.7□□□□□ -0.54
SPG11-213ENST00000558988 ERFEQ4G0M1 354 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 LRRC4BQ9NT99 713 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 ITSN2Q9NZM3 1697 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 KDM5CP41229 1560 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 DIP2CQ9Y2E4 1556 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 ARHGEF12Q9NZN5 1544 aa11.7□□□□□ -0.54
SPG11-213ENST00000558988 CCNB3Q8WWL7 1395 aa11.69□□□□□ -0.54
SPG11-213ENST00000558988 ABCA6Q8N139 1617 aa11.69□□□□□ -0.54
SPG11-213ENST00000558988 FOXR1Q6PIV2 292 aa11.69□□□□□ -0.54
SPG11-213ENST00000558988 LMTK3Q96Q04 1460 aa11.69□□□□□ -0.54
SPG11-213ENST00000558988 LOC105371045A0A1W2PR82 267 aa11.68□□□□□ -0.54
SPG11-213ENST00000558988 HNRNPMP52272 730 aaKnown RBP eCLIP11.68□□□□□ -0.54
SPG11-213ENST00000558988 TRIM22Q8IYM9 498 aa11.68□□□□□ -0.54
SPG11-213ENST00000558988 ZBTB3Q9H5J0 574 aa11.68□□□□□ -0.54
SPG11-213ENST00000558988 CFDP1Q9UEE9 299 aaPredicted RBP11.68□□□□□ -0.54
SPG11-213ENST00000558988 SYCP2Q9BX26 1530 aa11.68□□□□□ -0.54
SPG11-213ENST00000558988 SAMD9LQ8IVG5 1584 aa11.67□□□□□ -0.54
SPG11-213ENST00000558988 OIP5O43482 229 aa11.67□□□□□ -0.54
SPG11-213ENST00000558988 LYSMD3Q7Z3D4 306 aa11.67□□□□□ -0.54
SPG11-213ENST00000558988 KCTD15Q96SI1 283 aaPredicted RBP11.67□□□□□ -0.54
SPG11-213ENST00000558988 ESF1Q9H501 851 aaKnown RBP11.67□□□□□ -0.54
SPG11-213ENST00000558988 GPATCH8Q9UKJ3 1502 aaKnown RBP11.66□□□□□ -0.54
SPG11-213ENST00000558988 DBN1Q16643 649 aa11.66□□□□□ -0.54
SPG11-213ENST00000558988 ALYREFQ86V81 257 aaKnown RBP11.66□□□□□ -0.54
SPG11-213ENST00000558988 CABLES1Q8TDN4 633 aa11.66□□□□□ -0.54
SPG11-213ENST00000558988 GMCL1Q96IK5 515 aa11.66□□□□□ -0.54
SPG11-213ENST00000558988 BTBD11A6QL63 1104 aa11.65□□□□□ -0.54
SPG11-213ENST00000558988 DHX9Q08211 1270 aaKnown RBP11.65□□□□□ -0.54
SPG11-213ENST00000558988 PRPF38BQ5VTL8 546 aaKnown RBP11.65□□□□□ -0.54
SPG11-213ENST00000558988 TBC1D2Q9BYX2 928 aa11.65□□□□□ -0.54
SPG11-213ENST00000558988 MLH3Q9UHC1 1453 aa11.64□□□□□ -0.55
SPG11-213ENST00000558988 SPAG9O60271 1321 aaKnown RBP11.64□□□□□ -0.55
SPG11-213ENST00000558988 ZMYM1Q5SVZ6 1142 aa11.64□□□□□ -0.55
SPG11-213ENST00000558988 TSC1Q92574 1164 aa11.64□□□□□ -0.55
SPG11-213ENST00000558988 MKL2Q9ULH7 1088 aa11.64□□□□□ -0.55
SPG11-213ENST00000558988 KIDINS220Q9ULH0 1771 aa11.64□□□□□ -0.55
SPG11-213ENST00000558988 RHOQP17081 205 aa11.63□□□□□ -0.55
SPG11-213ENST00000558988 GTPBP3Q969Y2 492 aaKnown RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms