RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 NBPF10Q6P3W6 841 aaKnown RBP6.97□□□□□ -1.29
LRRC28-205ENST00000558248 NPM2Q86SE8 214 aaKnown RBP6.97□□□□□ -1.29
LRRC28-205ENST00000558248 PLEKHM2Q8IWE5 1019 aa6.97□□□□□ -1.29
LRRC28-205ENST00000558248 NBPF15Q8N660 670 aa6.97□□□□□ -1.29
LRRC28-205ENST00000558248 ADAMTS19Q8TE59 1207 aa6.97□□□□□ -1.29
LRRC28-205ENST00000558248 XAGE2Q96GT9 111 aa6.97□□□□□ -1.29
LRRC28-205ENST00000558248 ETNK1Q9HBU6 452 aa6.97□□□□□ -1.29
LRRC28-205ENST00000558248 USP17L3A6NCW0 530 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 USP17L4A6NCW7 530 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 SPATA31C2B4DYI2 1134 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 INHAP05111 366 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 POU4F2Q12837 409 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 USP17L2Q6R6M4 530 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 USP17L1Q7RTZ2 530 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 DEPDC4Q8N2C3 294 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 TIMMDC1Q9NPL8 285 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 DYRK1BQ9Y463 629 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 ERBB4Q15303 1308 aa6.96□□□□□ -1.3
LRRC28-205ENST00000558248 SENP3-EIF4A1A0A087X0R7 540 aa6.95□□□□□ -1.3
LRRC28-205ENST00000558248 BACH1O14867 736 aa6.95□□□□□ -1.3
LRRC28-205ENST00000558248 GMPRP36959 345 aa6.95□□□□□ -1.3
LRRC28-205ENST00000558248 TBC1D9Q6ZT07 1266 aa6.95□□□□□ -1.3
LRRC28-205ENST00000558248 SV2AQ7L0J3 742 aa6.95□□□□□ -1.3
LRRC28-205ENST00000558248 UCN2Q96RP3 112 aa6.95□□□□□ -1.3
LRRC28-205ENST00000558248 RBM19Q9Y4C8 960 aaKnown RBP6.95□□□□□ -1.3
LRRC28-205ENST00000558248 H7C1W4 665 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 SUPT5HO00267 1087 aaKnown RBP6.94□□□□□ -1.3
LRRC28-205ENST00000558248 SCNN1DP51172 638 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 FOXR1Q6PIV2 292 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 RIPOR1Q6ZS17 1223 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 RHBDD1Q8TEB9 315 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 NANOS1Q8WY41 292 aaKnown RBP6.94□□□□□ -1.3
LRRC28-205ENST00000558248 GMCL1Q96IK5 515 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 GAS2L1Q99501 681 aaPredicted RBP6.94□□□□□ -1.3
LRRC28-205ENST00000558248 HRH3Q9Y5N1 445 aa6.94□□□□□ -1.3
LRRC28-205ENST00000558248 ERCC6Q03468 1493 aa6.93□□□□□ -1.3
LRRC28-205ENST00000558248 A0A1B0GTH6 734 aa6.93□□□□□ -1.3
LRRC28-205ENST00000558248 FHDC1Q9C0D6 1143 aaPredicted RBP6.93□□□□□ -1.3
LRRC28-205ENST00000558248 PCDHGA11Q9Y5H2 935 aa6.93□□□□□ -1.3
LRRC28-205ENST00000558248 STAU1O95793 577 aaKnown RBP6.92□□□□□ -1.3
LRRC28-205ENST00000558248 F11P03951 625 aa6.92□□□□□ -1.3
LRRC28-205ENST00000558248 SMTNP53814 917 aa6.92□□□□□ -1.3
LRRC28-205ENST00000558248 PPARGC1BQ86YN6 1023 aaKnown RBP6.92□□□□□ -1.3
LRRC28-205ENST00000558248 TRIM22Q8IYM9 498 aa6.92□□□□□ -1.3
LRRC28-205ENST00000558248 VWA5B2Q8N398 1253 aa6.92□□□□□ -1.3
LRRC28-205ENST00000558248 NIFKQ9BYG3 293 aaKnown RBP6.92□□□□□ -1.3
LRRC28-205ENST00000558248 TFIP11Q9UBB9 837 aaKnown RBP6.92□□□□□ -1.3
LRRC28-205ENST00000558248 SERTAD1Q9UHV2 236 aa6.92□□□□□ -1.3
LRRC28-205ENST00000558248 PALM3A6NDB9 673 aaPredicted RBP6.91□□□□□ -1.3
LRRC28-205ENST00000558248 CSB-PGBD3P0DP91 1061 aa6.91□□□□□ -1.3
LRRC28-205ENST00000558248 PHKA2P46019 1235 aa6.91□□□□□ -1.3
LRRC28-205ENST00000558248 LCE2CQ5TA81 110 aa6.91□□□□□ -1.3
LRRC28-205ENST00000558248 PGBD3Q8N328 593 aa6.91□□□□□ -1.3
LRRC28-205ENST00000558248 PPP1R12CQ9BZL4 782 aa6.91□□□□□ -1.3
LRRC28-205ENST00000558248 DNAAF2Q9NVR5 837 aaKnown RBP6.91□□□□□ -1.3
LRRC28-205ENST00000558248 MKRN1Q9UHC7 482 aaKnown RBP6.91□□□□□ -1.3
LRRC28-205ENST00000558248 ZNF777Q9ULD5 760 aaPredicted RBP6.91□□□□□ -1.3
LRRC28-205ENST00000558248 MAFBQ9Y5Q3 323 aaPredicted RBP6.91□□□□□ -1.3
LRRC28-205ENST00000558248 SCRIBQ14160 1630 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 FAM181BA6NEQ2 426 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 A6NJY4 79 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 TMEM229AB2RXF0 380 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 C4orf17Q53FE4 359 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 LARGE2Q8N3Y3 721 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 OGFOD1Q8N543 542 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 TPCN2Q8NHX9 752 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 TRERF1Q96PN7 1200 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 SLC4A9Q96Q91 983 aa6.9□□□□□ -1.3
LRRC28-205ENST00000558248 PLA2G4AP47712 749 aa6.89□□□□□ -1.31
LRRC28-205ENST00000558248 NBPF1Q3BBV0 1214 aa6.89□□□□□ -1.31
LRRC28-205ENST00000558248 CCDC102BQ68D86 513 aa6.89□□□□□ -1.31
LRRC28-205ENST00000558248 LARP1Q6PKG0 1096 aaKnown RBP6.89□□□□□ -1.31
LRRC28-205ENST00000558248 ZMYND15Q9H091 742 aa6.89□□□□□ -1.31
LRRC28-205ENST00000558248 GPAMQ9HCL2 828 aa6.89□□□□□ -1.31
LRRC28-205ENST00000558248 ZNF358Q9NW07 568 aa6.89□□□□□ -1.31
LRRC28-205ENST00000558248 CDK2AP1O14519 115 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 RASA1P20936 1047 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 LBRQ14739 615 aaKnown RBP6.88□□□□□ -1.31
LRRC28-205ENST00000558248 MTFR1Q15390 333 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 EFHC2Q5JST6 749 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 ZSCAN1Q8NBB4 408 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.88□□□□□ -1.31
LRRC28-205ENST00000558248 C1orf216Q8TAB5 229 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 ZNF837Q96EG3 531 aaPredicted RBP6.88□□□□□ -1.31
LRRC28-205ENST00000558248 ZNF594Q96JF6 807 aaPredicted RBP6.88□□□□□ -1.31
LRRC28-205ENST00000558248 COL25A1Q9BXS0 654 aaPredicted RBP6.88□□□□□ -1.31
LRRC28-205ENST00000558248 NUCKS1Q9H1E3 243 aaKnown RBP6.88□□□□□ -1.31
LRRC28-205ENST00000558248 STK17AQ9UEE5 414 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 CHMP3Q9Y3E7 222 aa6.88□□□□□ -1.31
LRRC28-205ENST00000558248 TATP17735 454 aaPredicted RBP6.87□□□□□ -1.31
LRRC28-205ENST00000558248 LMOD1P29536 600 aaPredicted RBP6.87□□□□□ -1.31
LRRC28-205ENST00000558248 CLDN10P78369 228 aa6.87□□□□□ -1.31
LRRC28-205ENST00000558248 AIDAQ96BJ3 306 aa6.87□□□□□ -1.31
LRRC28-205ENST00000558248 CNTNAP3BQ96NU0 1288 aa6.87□□□□□ -1.31
LRRC28-205ENST00000558248 CNTNAP3Q9BZ76 1288 aa6.87□□□□□ -1.31
LRRC28-205ENST00000558248 CABP1Q9NZU7 370 aa6.87□□□□□ -1.31
LRRC28-205ENST00000558248 SIX5Q8N196 739 aa6.86□□□□□ -1.31
LRRC28-205ENST00000558248 GPR161Q8N6U8 529 aaKnown RBP6.86□□□□□ -1.31
LRRC28-205ENST00000558248 VRTNQ9H8Y1 702 aa6.86□□□□□ -1.31
LRRC28-205ENST00000558248 CUEDC1Q9NWM3 386 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms