RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 FLAD1Q8NFF5 587 aa22.5■■□□□ 1.19
NEDD4-212ENST00000557845 AK7Q96M32 723 aa22.5■■□□□ 1.19
NEDD4-212ENST00000557845 FHDC1Q9C0D6 1143 aaPredicted RBP22.5■■□□□ 1.19
NEDD4-212ENST00000557845 SCN11AQ9UI33 1791 aa22.49■■□□□ 1.19
NEDD4-212ENST00000557845 PPP2R1AP30153 589 aa22.49■■□□□ 1.19
NEDD4-212ENST00000557845 ITPK1Q13572 414 aa22.49■■□□□ 1.19
NEDD4-212ENST00000557845 MTHFSDQ2M296 383 aaKnown RBP22.49■■□□□ 1.19
NEDD4-212ENST00000557845 LINC00116Q8NCU8 138 aa22.49■■□□□ 1.19
NEDD4-212ENST00000557845 SYT17Q9BSW7 474 aa22.49■■□□□ 1.19
NEDD4-212ENST00000557845 POLD1P28340 1107 aa22.48■■□□□ 1.19
NEDD4-212ENST00000557845 CFAP53Q96M91 514 aa22.48■■□□□ 1.19
NEDD4-212ENST00000557845 RBM42Q9BTD8 480 aaKnown RBP22.48■■□□□ 1.19
NEDD4-212ENST00000557845 LGR6Q9HBX8 967 aa22.47■■□□□ 1.19
NEDD4-212ENST00000557845 UBR3Q6ZT12 1888 aa22.46■■□□□ 1.19
NEDD4-212ENST00000557845 AMIGO3Q86WK7 504 aa22.46■■□□□ 1.19
NEDD4-212ENST00000557845 SLC4A9Q96Q91 983 aa22.46■■□□□ 1.19
NEDD4-212ENST00000557845 DCAF8L1A6NGE4 600 aa22.45■■□□□ 1.18
NEDD4-212ENST00000557845 ZNF831Q5JPB2 1677 aa22.45■■□□□ 1.18
NEDD4-212ENST00000557845 VIRMAQ69YN4 1812 aaKnown RBP22.45■■□□□ 1.18
NEDD4-212ENST00000557845 RNMTO43148 476 aaKnown RBP22.44■■□□□ 1.18
NEDD4-212ENST00000557845 SMIM5Q71RC9 77 aa22.44■■□□□ 1.18
NEDD4-212ENST00000557845 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.43■■□□□ 1.18
NEDD4-212ENST00000557845 PHF14O94880 888 aa22.43■■□□□ 1.18
NEDD4-212ENST00000557845 SSFA2P28290 1259 aa22.43■■□□□ 1.18
NEDD4-212ENST00000557845 SLC52A2Q9HAB3 445 aa22.43■■□□□ 1.18
NEDD4-212ENST00000557845 MSL1Q68DK7 614 aa22.42■■□□□ 1.18
NEDD4-212ENST00000557845 NUDCQ9Y266 331 aa22.42■■□□□ 1.18
NEDD4-212ENST00000557845 MAP3K5Q99683 1374 aa22.41■■□□□ 1.18
NEDD4-212ENST00000557845 GNPATO15228 680 aa22.41■■□□□ 1.18
NEDD4-212ENST00000557845 PTCD1O75127 700 aaKnown RBP22.41■■□□□ 1.18
NEDD4-212ENST00000557845 RC3H1Q5TC82 1133 aaKnown RBP22.39■■□□□ 1.17
NEDD4-212ENST00000557845 COL5A3P25940 1745 aaPredicted RBP22.38■■□□□ 1.17
NEDD4-212ENST00000557845 KLHL34Q8N239 644 aa22.38■■□□□ 1.17
NEDD4-212ENST00000557845 GAS2L2Q8NHY3 880 aa22.38■■□□□ 1.17
NEDD4-212ENST00000557845 RSPH6AQ9H0K4 717 aa22.38■■□□□ 1.17
NEDD4-212ENST00000557845 ADAMTS7Q9UKP4 1686 aa22.38■■□□□ 1.17
NEDD4-212ENST00000557845 U2AF1L5P0DN76 240 aaPredicted RBP22.37■■□□□ 1.17
NEDD4-212ENST00000557845 PRKAR2BP31323 418 aa22.37■■□□□ 1.17
NEDD4-212ENST00000557845 U2AF1Q01081 240 aaKnown RBP eCLIP22.37■■□□□ 1.17
NEDD4-212ENST00000557845 PHACTR3Q96KR7 559 aa22.37■■□□□ 1.17
NEDD4-212ENST00000557845 RTCBQ9Y3I0 505 aaKnown RBP22.37■■□□□ 1.17
NEDD4-212ENST00000557845 CNTNAP4Q9C0A0 1308 aa22.36■■□□□ 1.17
NEDD4-212ENST00000557845 MRC1P22897 1456 aa22.36■■□□□ 1.17
NEDD4-212ENST00000557845 GNAT3A8MTJ3 354 aa22.36■■□□□ 1.17
NEDD4-212ENST00000557845 TRAPPC3LQ5T215 181 aa22.36■■□□□ 1.17
NEDD4-212ENST00000557845 SLC39A6Q13433 755 aa22.35■■□□□ 1.17
NEDD4-212ENST00000557845 IL17REQ8NFR9 667 aa22.35■■□□□ 1.17
NEDD4-212ENST00000557845 MYH14Q7Z406 1995 aaKnown RBP22.35■■□□□ 1.17
NEDD4-212ENST00000557845 RPS6KA4O75676 772 aa22.34■■□□□ 1.17
NEDD4-212ENST00000557845 FCHSD2O94868 740 aa22.34■■□□□ 1.17
NEDD4-212ENST00000557845 DDX10Q13206 875 aaKnown RBP22.33■■□□□ 1.17
NEDD4-212ENST00000557845 ARHGEF1Q92888 912 aaKnown RBP22.33■■□□□ 1.17
NEDD4-212ENST00000557845 ADRA2BP18089 450 aa22.32■■□□□ 1.16
NEDD4-212ENST00000557845 CRKLP46109 303 aaKnown RBP22.32■■□□□ 1.16
NEDD4-212ENST00000557845 TJP1Q07157 1748 aa22.31■■□□□ 1.16
NEDD4-212ENST00000557845 NLGN2Q8NFZ4 835 aa22.31■■□□□ 1.16
NEDD4-212ENST00000557845 CICQ96RK0 1608 aaPredicted RBP22.31■■□□□ 1.16
NEDD4-212ENST00000557845 TEFQ10587 303 aa22.3■■□□□ 1.16
NEDD4-212ENST00000557845 DNAJC10Q8IXB1 793 aa22.3■■□□□ 1.16
NEDD4-212ENST00000557845 CD2APQ9Y5K6 639 aa22.29■■□□□ 1.16
NEDD4-212ENST00000557845 YY1P25490 414 aa22.28■■□□□ 1.16
NEDD4-212ENST00000557845 RFC4P35249 363 aa22.28■■□□□ 1.16
NEDD4-212ENST00000557845 RALBP1Q15311 655 aa22.28■■□□□ 1.16
NEDD4-212ENST00000557845 GPR162Q16538 588 aa22.28■■□□□ 1.16
NEDD4-212ENST00000557845 INTS5Q6P9B9 1019 aaKnown RBP22.28■■□□□ 1.16
NEDD4-212ENST00000557845 KCPQ6ZWJ8 1503 aa22.27■■□□□ 1.16
NEDD4-212ENST00000557845 VSIG10Q8N0Z9 540 aa22.27■■□□□ 1.16
NEDD4-212ENST00000557845 NLGN1Q8N2Q7 840 aa22.27■■□□□ 1.16
NEDD4-212ENST00000557845 CEMIPQ8WUJ3 1361 aa22.26■■□□□ 1.15
NEDD4-212ENST00000557845 SIPA1L3O60292 1781 aaPredicted RBP22.26■■□□□ 1.15
NEDD4-212ENST00000557845 CYP19A1P11511 503 aaPredicted RBP22.26■■□□□ 1.15
NEDD4-212ENST00000557845 TTC5Q8N0Z6 440 aa22.26■■□□□ 1.15
NEDD4-212ENST00000557845 UBR2Q8IWV8 1755 aa22.25■■□□□ 1.15
NEDD4-212ENST00000557845 GYS1P13807 737 aa22.25■■□□□ 1.15
NEDD4-212ENST00000557845 ZNF790Q6PG37 636 aa22.25■■□□□ 1.15
NEDD4-212ENST00000557845 CCDC87Q9NVE4 849 aa22.25■■□□□ 1.15
NEDD4-212ENST00000557845 MMP10P09238 476 aa22.24■■□□□ 1.15
NEDD4-212ENST00000557845 C4AP0C0L4 1744 aa22.23■■□□□ 1.15
NEDD4-212ENST00000557845 PELP1Q8IZL8 1130 aaKnown RBP22.23■■□□□ 1.15
NEDD4-212ENST00000557845 RTF1Q92541 710 aaKnown RBP22.23■■□□□ 1.15
NEDD4-212ENST00000557845 ZNF496Q96IT1 587 aaPredicted RBP22.22■■□□□ 1.15
NEDD4-212ENST00000557845 BTBD11A6QL63 1104 aa22.21■■□□□ 1.15
NEDD4-212ENST00000557845 HTATSF1O43719 755 aaKnown RBP22.21■■□□□ 1.15
NEDD4-212ENST00000557845 NEFMP07197 916 aa22.21■■□□□ 1.15
NEDD4-212ENST00000557845 MCM10Q7L590 875 aa22.21■■□□□ 1.15
NEDD4-212ENST00000557845 PLEKHF1Q96S99 279 aa22.21■■□□□ 1.15
NEDD4-212ENST00000557845 CHD4Q14839 1912 aa22.21■■□□□ 1.15
NEDD4-212ENST00000557845 SRP68Q9UHB9 627 aaKnown RBP22.2■■□□□ 1.14
NEDD4-212ENST00000557845 STARD3NLO95772 234 aa22.19■■□□□ 1.14
NEDD4-212ENST00000557845 ZEB1P37275 1124 aaPredicted RBP22.19■■□□□ 1.14
NEDD4-212ENST00000557845 DCTN1Q14203 1278 aa22.19■■□□□ 1.14
NEDD4-212ENST00000557845 TEX13AQ9BXU3 409 aaPredicted RBP22.19■■□□□ 1.14
NEDD4-212ENST00000557845 PNNQ9H307 717 aaKnown RBP22.19■■□□□ 1.14
NEDD4-212ENST00000557845 ZBTB1Q9Y2K1 713 aa22.19■■□□□ 1.14
NEDD4-212ENST00000557845 SOS1Q07889 1333 aaPredicted RBP22.19■■□□□ 1.14
NEDD4-212ENST00000557845 USP42Q9H9J4 1324 aaKnown RBP22.19■■□□□ 1.14
NEDD4-212ENST00000557845 HEG1Q9ULI3 1381 aa22.19■■□□□ 1.14
NEDD4-212ENST00000557845 KCNQ3O43525 872 aa22.18■■□□□ 1.14
NEDD4-212ENST00000557845 FMNL2Q96PY5 1086 aa22.18■■□□□ 1.14
NEDD4-212ENST00000557845 ZPR1O75312 459 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms